mRNA_M-pyrifera_M_contig127566.5559.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A5A8D777_CAFRO (FACT complex subunit n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D777_CAFRO) HSP 1 Score: 99.4 bits (246), Expect = 3.990e-21 Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 40 DFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPPGSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
D QSG N ++ + + P ++ D + + G +S +A+ AR++ ++ T Q YKAL EAH TLL L G+VIG +V+ A + L PG+ +P +G G+G+ + E L L D+ RTVE GM+FAVVT + P D
Sbjct: 264 DIGLPACVQSGSSINVDIFK-ATPSTEKLTADTAVFSFGARYRSFHAVLARTLFVNTTRSQTEAYKALTEAHGTLLEGLKAGSVIGDVVKEARAILSKGV-PGATIPECMGSGVGVLVEEPGLRLTEDNTRTVEEGMSFAVVTAVKDAPNED 413
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A812PW62_9DINO (FACT complex subunit n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PW62_9DINO) HSP 1 Score: 99.4 bits (246), Expect = 4.110e-21 Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 1
Query: 40 DFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPPGSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
D QSG N ++ + + P ++ D + + G +S +A+ AR++ ++ T Q YKAL EAH TLL L G+VIG +V+ A + L PG+ +P +G G+G+ + E L L D+ RTVE GM+FAVVT + P D
Sbjct: 354 DIGLPACVQSGSSINVDIFK-ATPSTEKLTADTAVFSFGARYRSFHAVLARTLFVNTTRSQTEAYKALTEAHGTLLEGLKAGSVIGDVVKEARAILSKGV-PGATIPECMGSGVGVLVEEPGLRLTEDNTRTVEEGMSFAVVTAVKDAPNED 503
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A024UKG2_9STRA (FACT complex subunit n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKG2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 7.810e-17 Identity = 50/166 (30.12%), Postives = 82/166 (49.40%), Query Frame = 1
Query: 1 PSQIRVTAPQERCDFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPP-GSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
PS+I+VT E + +SP+ QSGGKY +L+ +Q + DV++ +VG + + + AR+ + PT Y+ L EAH+ +N L PG + +V+ +++ P +L + G GIGL RE + L + ++ G F V IP D
Sbjct: 229 PSKIKVTLSPEDIESCYSPIIQSGGKY--DLKPSAQSTSDVMKFDVIVASVGARYKGYCSNVARTFFVTPTKSMERSYELLHEAHDACINELRPGKTVSQVVEKITKLIESRNPKLAKLLTKNFGFGIGLDFREAGMLLTAKNHHVIQAGQAFNVAIGFQNIPLKD 392
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: G2Q7B2_MYCTT (FACT complex subunit n=3 Tax=Chaetomiaceae TaxID=35718 RepID=G2Q7B2_MYCTT) HSP 1 Score: 85.1 bits (209), Expect = 3.640e-16 Identity = 47/152 (30.92%), Postives = 81/152 (53.29%), Query Frame = 1
Query: 31 ERCDFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPP-GSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKI 483
E+ D+ P+ QSGGK++ + + DS DD P+ P V++ A+G +S+ + AR+ ++DP Q Y+ LL HN +L + G V+ + A + +++ P ++G+GIGL ++ L L + RT+ GMT + T I
Sbjct: 249 EQLDWILGPMVQSGGKFDLKWQTDS--DDQPLHPGVIIAAMGLRYKSYCSQIARTFMVDPNKSQESNYRFLLAVHNLILKEIRDGVVVKDVYNKAYNLIKSKKPELEKHFLKNVGYGIGLENKDPTLVLNGKNTRTLRDGMTLCITTGFSDI 398
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A7S0JQ80_CAFRO (FACT complex subunit (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JQ80_CAFRO) HSP 1 Score: 78.6 bits (192), Expect = 3.880e-15 Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 202 IDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPPGSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
++ T Q YKAL EAH TLL L G+VIG +V+ A + L PG+ +P +G G+G+ + E L L D+ RTVE GM+FAVVT + P D
Sbjct: 1 VNTTRSQTEAYKALTEAHGTLLEGLKAGSVIGDVVKEARAILSKGV-PGATIPECMGSGVGVLVEEPGLRLTEDNTRTVEEGMSFAVVTAVKDAPNED 97
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A7S0VKR2_9CHLO (FACT complex subunit (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VKR2_9CHLO) HSP 1 Score: 80.5 bits (197), Expect = 1.230e-14 Identity = 48/141 (34.04%), Postives = 74/141 (52.48%), Query Frame = 1
Query: 1 PSQIRVTAPQERCDFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPPGSV--LPSDLGHGIGLSIREKHLDLK 417
PS+I V E C+ + P+ QSGG ++ S D A S VV++A+G ++ + +RS ++ T +Q Y+ALL A + +L GA + + AA+ L+ A P V L ++GHGIGL +RE LK
Sbjct: 227 PSRIHVKLRPENCEIAYQPIFQSGGNFDLRFAAVSD-DQALASEGVVIVALGARYSNYCSNISRSFFVNATKRQESQYRALLAAQEAAIKALKVGAPLTDPMDAAIEALKQAGEPDLVSHLGKNVGHGIGLELRESAWQLK 366
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A061QSZ0_9CHLO (FACT complex subunit n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QSZ0_9CHLO) HSP 1 Score: 78.6 bits (192), Expect = 6.900e-14 Identity = 50/165 (30.30%), Postives = 83/165 (50.30%), Query Frame = 1
Query: 1 PSQIRVTAPQERCDFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPPGSV--LPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPR 489
P ++ + E D + P+ QSGG+Y +L+ +Q ++ + V+ +VG S+ A AR+ ++DP+ +Q YKA+L A + +LV GA + A + L+ + V L ++GHG+GL +RE L + R V GM F V I + R
Sbjct: 222 PGKLNIKLRPENVDMAYLPVFQSGGRY--DLKLTAQSEETSLHYSVICASVGARYASYCANVARTYMVDPSKEQEQEYKAVLAAQQAAIEALVDGASMCDAHSAVVRTLEKSGQGRLVQHLTKNVGHGMGLELRESSNILNAKNTRRVCAGMVFNVCIGIQGLTR 384
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A3R6YZL0_9STRA (FACT complex subunit (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6YZL0_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.110e-13 Identity = 44/150 (29.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query: 49 FSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPP-GSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
+SP+ QSGGKY +L+ +Q + DV++ +VG + + + AR+ + PT Y+ L EAH+ +N L PG + +V +++ P +L + G GIGL RE + L + ++ G F V IP D
Sbjct: 366 YSPIIQSGGKY--DLKPSAQSSSDVMKFDVIVASVGARYKGYCSNVARTFFVTPTKSMERSYELLHEAHDMCINELRPGKTVSQVVDKVTKLVESRNPKLAKLLTKNFGFGIGLDFREAGMVLTAKNHHVIQAGQAFNVAMGFQNIPLKD 513
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A3L6VHR3_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VHR3_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.150e-13 Identity = 44/150 (29.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query: 49 FSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPP-GSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
+SP+ QSGGKY +L+ +Q + DV++ +VG + + + AR+ + PT Y+ L EAH+ +N L PG + +V +++ P +L + G GIGL RE + L + ++ G F V IP D
Sbjct: 224 YSPIIQSGGKY--DLKPSAQSSSDVMKFDVIVASVGARYKGYCSNVARTFFVTPTKSMERSYELLHEAHDMCINELRPGKTVSQVVDKVTKLVESRNPKLAKLLTKNFGFGIGLDFREAGMVLTAKNHHVIQAGQAFNVAMGFQNIPLKD 371
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Match: A0A397FEY9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FEY9_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.180e-13 Identity = 44/150 (29.33%), Postives = 72/150 (48.00%), Query Frame = 1
Query: 49 FSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAVGGAVQSHYALCARSIIIDPTPKQMGLYKALLEAHNTLLNSLVPGAVIGPLVQAALSKLQAAAPP-GSVLPSDLGHGIGLSIREKHLDLKPDSKRTVEPGMTFAVVTRIDKIPRLD 495
+SP+ QSGGKY +L+ +Q + DV++ +VG + + + AR+ + PT Y+ L EAH+ +N L PG + +V +++ P +L + G GIGL RE + L + ++ G F V IP D
Sbjct: 97 YSPIIQSGGKY--DLKPSAQSSSDVMKFDVIVASVGARYKGYCSNVARTFFVTPTKSMERSYELLHEAHDMCINELRPGKTVSQVVDKVTKLVESRNPKLAKLLTKNFGFGIGLDFREAGMVLTAKNHHVIQAGQAFNVAMGFQNIPLKD 244 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127566.5559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig127566.5559.1 >prot_M-pyrifera_M_contig127566.5559.1 ID=prot_M-pyrifera_M_contig127566.5559.1|Name=mRNA_M-pyrifera_M_contig127566.5559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp PSQIRVTAPQERCDFWFSPLAQSGGKYNTELRRDSQPDDAPVSPDVVLLAback to top mRNA from alignment at M-pyrifera_M_contig127566:9..503- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig127566.5559.1 ID=mRNA_M-pyrifera_M_contig127566.5559.1|Name=mRNA_M-pyrifera_M_contig127566.5559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig127566:9..503- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig127566:9..503- >mRNA_M-pyrifera_M_contig127566.5559.1 ID=mRNA_M-pyrifera_M_contig127566.5559.1|Name=mRNA_M-pyrifera_M_contig127566.5559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig127566:9..503- (Macrocystis pyrifera P11B4 male)back to top |