mRNA_M-pyrifera_M_contig12756.5557.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12756.5557.1
Unique NamemRNA_M-pyrifera_M_contig12756.5557.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12756.5557.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.800e-19
Identity = 76/175 (43.43%), Postives = 96/175 (54.86%), Query Frame = 1 
Query:   13 LPLEHIFATAARVYRRSRLHPAFLDWHASASAIASRQQHHRHAK--AATSIQALVRAHLSRQAAVGHLRKRWPTPERASRTIQRAVRVSQER-RRAMLARDSLNRKREEERXXXEKRVETSRAMAKTKERRDTSASAIQAVWRGVAGRADGEARARRKLLSVLVDLGGGTRRMHR 528
            LPL+HIFATAA VYRRSRL  A   WH+ A A    + HH + +  AA  IQ   R  ++R  A    R R P    ASR IQ   R  + R + A +A    NR+   +R   ++        AK ++RR  +++ IQA WRG AGRA G  RARR L  VL +LGGG  RMHR
Sbjct:   40 LPLDHIFATAAGVYRRSRLRTALSTWHSVAKA----ETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCDE-------TAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGRMHR 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12756.5557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE8.800e-1943.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12756contigM-pyrifera_M_contig12756:1040..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003450.1
Exons1
Model size531
Cds size531
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815790.0923145-CDS-M-pyrifera_M_contig12756:1039..15701622815790.0923145-CDS-M-pyrifera_M_contig12756:1039..1570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12756 1040..1570 -
1692277570.7299488-CDS-M-pyrifera_M_contig12756:1039..15701692277570.7299488-CDS-M-pyrifera_M_contig12756:1039..1570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12756 1040..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12756.5557.1prot_M-pyrifera_M_contig12756.5557.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12756 1040..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12756.5557.1

>prot_M-pyrifera_M_contig12756.5557.1 ID=prot_M-pyrifera_M_contig12756.5557.1|Name=mRNA_M-pyrifera_M_contig12756.5557.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
MLGRLPLEHIFATAARVYRRSRLHPAFLDWHASASAIASRQQHHRHAKAA
TSIQALVRAHLSRQAAVGHLRKRWPTPERASRTIQRAVRVSQERRRAMLA
RDSLNRKREEERREREKRVETSRAMAKTKERRDTSASAIQAVWRGVAGRA
DGEARARRKLLSVLVDLGGGTRRMHR*
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mRNA from alignment at M-pyrifera_M_contig12756:1040..1570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12756.5557.1 ID=mRNA_M-pyrifera_M_contig12756.5557.1|Name=mRNA_M-pyrifera_M_contig12756.5557.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig12756:1040..1570- (Macrocystis pyrifera P11B4 male)
ATGCTTGGCAGGCTCCCCTTGGAGCACATTTTCGCGACCGCGGCACGCGT
ATACCGCCGCTCCCGCCTCCACCCGGCCTTCCTAGACTGGCACGCCTCCG
CCTCTGCGATAGCAAGCCGACAACAACACCACCGCCATGCTAAGGCTGCC
ACCAGCATCCAAGCGCTCGTTCGGGCACACCTCTCCCGCCAGGCCGCCGT
CGGACACCTCCGCAAGCGCTGGCCGACACCCGAACGAGCGTCGCGCACTA
TCCAGCGGGCCGTTCGGGTGAGCCAAGAGCGACGACGGGCAATGCTGGCG
CGAGATTCTCTGAACCGCAAACGTGAGGAGGAACGTCGGGAGAGAGAGAA
ACGCGTCGAGACGTCTCGCGCAATGGCGAAGACAAAAGAGAGACGAGATA
CGTCGGCGTCCGCGATCCAGGCGGTTTGGCGGGGGGTGGCCGGGAGAGCG
GACGGGGAGGCGAGGGCGAGACGCAAGCTTCTGAGTGTTTTGGTGGATCT
TGGCGGCGGGACCCGGCGCATGCACAGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12756:1040..1570-

>mRNA_M-pyrifera_M_contig12756.5557.1 ID=mRNA_M-pyrifera_M_contig12756.5557.1|Name=mRNA_M-pyrifera_M_contig12756.5557.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig12756:1040..1570- (Macrocystis pyrifera P11B4 male)
ATGCTTGGCAGGCTCCCCTTGGAGCACATTTTCGCGACCGCGGCACGCGT
ATACCGCCGCTCCCGCCTCCACCCGGCCTTCCTAGACTGGCACGCCTCCG
CCTCTGCGATAGCAAGCCGACAACAACACCACCGCCATGCTAAGGCTGCC
ACCAGCATCCAAGCGCTCGTTCGGGCACACCTCTCCCGCCAGGCCGCCGT
CGGACACCTCCGCAAGCGCTGGCCGACACCCGAACGAGCGTCGCGCACTA
TCCAGCGGGCCGTTCGGGTGAGCCAAGAGCGACGACGGGCAATGCTGGCG
CGAGATTCTCTGAACCGCAAACGTGAGGAGGAACGTCGGGAGAGAGAGAA
ACGCGTCGAGACGTCTCGCGCAATGGCGAAGACAAAAGAGAGACGAGATA
CGTCGGCGTCCGCGATCCAGGCGGTTTGGCGGGGGGTGGCCGGGAGAGCG
GACGGGGAGGCGAGGGCGAGACGCAAGCTTCTGAGTGTTTTGGTGGATCT
TGGCGGCGGGACCCGGCGCATGCACAGGTAGATGCTTGGCAGGCTCCCCT
TGGAGCACATTTTCGCGACCGCGGCACGCGTATACCGCCGCTCCCGCCTC
CACCCGGCCTTCCTAGACTGGCACGCCTCCGCCTCTGCGATAGCAAGCCG
ACAACAACACCACCGCCATGCTAAGGCTGCCACCAGCATCCAAGCGCTCG
TTCGGGCACACCTCTCCCGCCAGGCCGCCGTCGGACACCTCCGCAAGCGC
TGGCCGACACCCGAACGAGCGTCGCGCACTATCCAGCGGGCCGTTCGGGT
GAGCCAAGAGCGACGACGGGCAATGCTGGCGCGAGATTCTCTGAACCGCA
AACGTGAGGAGGAACGTCGGGAGAGAGAGAAACGCGTCGAGACGTCTCGC
GCAATGGCGAAGACAAAAGAGAGACGAGATACGTCGGCGTCCGCGATCCA
GGCGGTTTGGCGGGGGGTGGCCGGGAGAGCGGACGGGGAGGCGAGGGCGA
GACGCAAGCTTCTGAGTGTTTTGGTGGATCTTGGCGGCGGGACCCGGCGC
ATGCACAGGTAG
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