mRNA_M-pyrifera_M_contig127547.5553.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127547.5553.1
Unique NamemRNA_M-pyrifera_M_contig127547.5553.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127547.5553.1 vs. uniprot
Match: A0A7S2KTT3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTT3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.120e-8
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   52 LEAKRQLARERAVAIEELKMLRGSLTRCFQLEGVNHLEHCKKYVKAYAKALE 207
            LE  +Q ARE+AVAIE +K+ R  + +C++ EGVNH E+CK+ VK Y   ++
Sbjct:   38 LEEMQQRAREKAVAIEAVKLARQDVIQCYRKEGVNHYENCKEVVKKYVNMIQ 89
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BLAST of mRNA_M-pyrifera_M_contig127547.5553.1 vs. uniprot
Match: A0A1X7VSM8_AMPQE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VSM8_AMPQE)

HSP 1 Score: 51.6 bits (122), Expect = 1.040e-6
Identity = 25/61 (40.98%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   19 VVPGSLSGPERLEAKRQLARERAVAIEELKMLRGSLTRCFQLEGVNHLEHCKKYVKAYAKA 201
            V PG   G ++  A+ Q+AR+RA+ +E +++LR  +  C + E VNHL+ C+++V+AY KA
Sbjct:   41 VEPGDFLGKQK--ARDQVARDRAIDLEVVRILRERVKECQRREEVNHLQRCREHVEAYMKA 99
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BLAST of mRNA_M-pyrifera_M_contig127547.5553.1 vs. uniprot
Match: A0A371DY77_9APHY (NADH-ubiquinone oxidoreductase 12 kDa subunit n=4 Tax=Polyporaceae TaxID=5317 RepID=A0A371DY77_9APHY)

HSP 1 Score: 48.1 bits (113), Expect = 1.130e-5
Identity = 25/54 (46.30%), Postives = 31/54 (57.41%), Query Frame = 1 
Query:   49 RLEAKRQLARERAVAIEELKMLRGSLTRCFQLEGVNHLEHCKKYVKAYAKALEE 210
            RL  + Q  RE  V   E K++R  L RC+Q EGVNHLE CK   + Y + L E
Sbjct:   14 RLAEREQTIRESWVRTMEAKLVRDQLDRCYQTEGVNHLESCKDLRERYIEMLRE 67
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BLAST of mRNA_M-pyrifera_M_contig127547.5553.1 vs. uniprot
Match: A0A060SIN2_PYCCI (Uncharacterized protein n=2 Tax=Trametes TaxID=5324 RepID=A0A060SIN2_PYCCI)

HSP 1 Score: 45.8 bits (107), Expect = 9.150e-5
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   49 RLEAKRQLARERAVAIEELKMLRGSLTRCFQLEGVNHLEHCKKYVKAYAKALEE 210
            RL  + ++ RE  V   E K++R  L RC++ EGVNH+E CK+  + Y   L+E
Sbjct:   14 RLAERERIIRESWVRTMEAKLVREKLDRCYETEGVNHMESCKELRERYIDMLKE 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127547.5553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2KTT3_9STRA5.120e-848.08Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1X7VSM8_AMPQE1.040e-640.98NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A371DY77_9APHY1.130e-546.30NADH-ubiquinone oxidoreductase 12 kDa subunit n=4 ... [more]
A0A060SIN2_PYCCI9.150e-540.74Uncharacterized protein n=2 Tax=Trametes TaxID=532... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127547contigM-pyrifera_M_contig127547:122..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.9240808-CDS-M-pyrifera_M_contig127547:121..3311622815789.9240808-CDS-M-pyrifera_M_contig127547:121..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127547 122..331 +
1692277570.6661396-CDS-M-pyrifera_M_contig127547:121..3311692277570.6661396-CDS-M-pyrifera_M_contig127547:121..331Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127547 122..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127547.5553.1prot_M-pyrifera_M_contig127547.5553.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127547 122..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127547.5553.1

>prot_M-pyrifera_M_contig127547.5553.1 ID=prot_M-pyrifera_M_contig127547.5553.1|Name=mRNA_M-pyrifera_M_contig127547.5553.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
RDGDGNVVPGSLSGPERLEAKRQLARERAVAIEELKMLRGSLTRCFQLEG
VNHLEHCKKYVKAYAKALEE
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mRNA from alignment at M-pyrifera_M_contig127547:122..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127547.5553.1 ID=mRNA_M-pyrifera_M_contig127547.5553.1|Name=mRNA_M-pyrifera_M_contig127547.5553.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig127547:122..331+ (Macrocystis pyrifera P11B4 male)
CGGGACGGGGACGGCAACGTGGTCCCGGGGTCCCTCTCGGGGCCCGAGCG
CCTCGAGGCCAAGCGGCAGCTCGCCAGGGAGCGCGCCGTAGCCATCGAGG
AGCTCAAAATGCTGCGCGGATCGCTCACACGCTGCTTCCAGCTCGAGGGC
GTCAACCACCTCGAACACTGCAAGAAGTACGTCAAGGCATACGCAAAGGC
GCTCGAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127547:122..331+

>mRNA_M-pyrifera_M_contig127547.5553.1 ID=mRNA_M-pyrifera_M_contig127547.5553.1|Name=mRNA_M-pyrifera_M_contig127547.5553.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig127547:122..331+ (Macrocystis pyrifera P11B4 male)
CGGGACGGGGACGGCAACGTGGTCCCGGGGTCCCTCTCGGGGCCCGAGCG
CCTCGAGGCCAAGCGGCAGCTCGCCAGGGAGCGCGCCGTAGCCATCGAGG
AGCTCAAAATGCTGCGCGGATCGCTCACACGCTGCTTCCAGCTCGAGGGC
GTCAACCACCTCGAACACTGCAAGAAGTACGTCAAGGCATACGCAAAGGC
GCTCGAAGAGCGGGACGGGGACGGCAACGTGGTCCCGGGGTCCCTCTCGG
GGCCCGAGCGCCTCGAGGCCAAGCGGCAGCTCGCCAGGGAGCGCGCCGTA
GCCATCGAGGAGCTCAAAATGCTGCGCGGATCGCTCACACGCTGCTTCCA
GCTCGAGGGCGTCAACCACCTCGAACACTGCAAGAAGTACGTCAAGGCAT
ACGCAAAGGCGCTCGAAGAG
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