mRNA_M-pyrifera_M_contig127530.5550.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127530.5550.1
Unique NamemRNA_M-pyrifera_M_contig127530.5550.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A518JM81_9BACT (Type II secretion system protein G n=6 Tax=Rosistilla TaxID=2795779 RepID=A0A518JM81_9BACT)

HSP 1 Score: 239 bits (609), Expect = 7.030e-77
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ 363
            TNTFLVGETKYHLTEAGT STFYLSWASSIRLGTGGTMPHPVT+AGTYEPINSRIPTGSVP GSTDSRTGYSRLFGSFHPGGCNMLM DASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ
Sbjct:  206 TNTFLVGETKYHLTEAGTTSTFYLSWASSIRLGTGGTMPHPVTMAGTYEPINSRIPTGSVPMGSTDSRTGYSRLFGSFHPGGCNMLMGDASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ 326          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A5C6CIC2_9BACT (Uncharacterized protein n=2 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CIC2_9BACT)

HSP 1 Score: 213 bits (542), Expect = 1.480e-66
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGL 357
            TNTFLVGETKYHLTEAGT STFY SWASSIRLG+GGTMPHP TLAG+YE INSRIPTGS P GSTDSRTGYSRLFGS+HPGGC+MLM DASVNF+SE+MDL++YRQLGIRND+LPIGGL
Sbjct:  221 TNTFLVGETKYHLTEAGTNSTFYFSWASSIRLGSGGTMPHPATLAGSYESINSRIPTGSKPVGSTDSRTGYSRLFGSYHPGGCHMLMGDASVNFISESMDLDLYRQLGIRNDALPIGGL 339          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A4A1C2_9BACT (Uncharacterized protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A4A1C2_9BACT)

HSP 1 Score: 203 bits (517), Expect = 5.770e-63
Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTG-SVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGG 354
            T TFLVGETKYHLTE+GT STFYLSWASSIRLGTG TMPHP TLAGTYEPINSRIPTG +VP    DSRTGYSRLFGSFHPGGCNML+ADASV+F +ET++L+IYRQLGIRND LPIGG
Sbjct:  206 TKTFLVGETKYHLTESGTTSTFYLSWASSIRLGTGSTMPHPATLAGTYEPINSRIPTGGTVPASGADSRTGYSRLFGSFHPGGCNMLLADASVDFTAETINLDIYRQLGIRNDGLPIGG 324          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A7V8V6J9_9BACT (Uncharacterized protein n=2 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V6J9_9BACT)

HSP 1 Score: 201 bits (511), Expect = 4.650e-62
Identity = 98/122 (80.33%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSV-PKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ 363
            T TFLVGE+KYHLTEAGT STFYLSW+SSIRLG+G TMPHPVT+AG YEPINSR  TG + P+  +DSRTGYSRLFGSFHPGGCNMLMADASV+F+ ET+DL+IYRQLGIRNDS P+GGLPQ
Sbjct:  205 TKTFLVGESKYHLTEAGTTSTFYLSWSSSIRLGSGSTMPHPVTMAGAYEPINSRETTGGMQPQSGSDSRTGYSRLFGSFHPGGCNMLMADASVHFLPETIDLDIYRQLGIRNDSAPVGGLPQ 326          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A3ZRN0_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina DSM 3645 TaxID=314230 RepID=A3ZRN0_9BACT)

HSP 1 Score: 102 bits (253), Expect = 1.200e-23
Identity = 57/120 (47.50%), Postives = 71/120 (59.17%), Query Frame = 1
Query:    4 NTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ 363
            NT +VGETKY LT  G     Y SWAS  +    G    P  LA   + INS    G       D+    S+LFGS+HPGGC+ L+ D SV+F+SET+DLN+YRQLG  +D LP GG P+
Sbjct:  205 NTLMVGETKYALTPEGRADGIYTSWASGTKTDAFGC---PWVLAAARDQINSNPKVGLT----HDTLNVMSKLFGSYHPGGCHFLLGDGSVHFMSETIDLNLYRQLGKLDDQLPTGGFPR 317          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A4V0I458_9BACT (Uncharacterized protein n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A4V0I458_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 1.060e-22
Identity = 57/120 (47.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGLP 360
            TNTF+VGETKY  T  G     ++ WAS   L   G   +P  +A     INS    G    G+ D    +SRLFGSFH GGCN +M D SV FVS+T+ L  Y+QL +RND LP+GG P
Sbjct:  216 TNTFVVGETKYCTTPTGRSDGIHIGWASGTNLQEFG---NPYGVAAAVLQINSIGTNG----GNADQLGNFSRLFGSFHTGGCNFVMCDGSVRFVSDTIALATYQQLAVRNDGLPLGGAP 328          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A2S8GT17_9BACT (Prepilin-type cleavage/methylation domain-containing protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8GT17_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 3.450e-22
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    4 NTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGG 354
            NTF+VGE+KY LT  G     Y  WAS  +  + G+   P  LA   + INS    G       D+    ++LFGS+HPGGC  L+ D SV+F+ ETMDLNIYRQLG  ND LP GG
Sbjct:  205 NTFMVGESKYCLTPTGRSDGIYTGWASGSKTDSYGS---PYVLAAARDQINSNPKVGL----KFDTLNIMTKLFGSYHPGGCFFLLGDGSVHFLPETMDLNIYRQLGKANDGLPAGG 314          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A6C7I8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia maris TaxID=122 RepID=A6C7I8_9PLAN)

HSP 1 Score: 98.2 bits (243), Expect = 3.650e-22
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    4 NTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGLPQ 363
            N  LVGE+ Y+ T A T +  Y+ WAS+  +G+GG+  H + L      IN+      V   + D R   S  FGSFH GGC+ L+AD SV+F+SE +D+ ++R LGIRND LP+GG  Q
Sbjct:  207 NVLLVGESHYNTTTANTSNGSYVGWASTPNVGSGGSR-HAINLTAADGGINA----APVDPNTGDPRDYQSHHFGSFHTGGCHFLLADGSVHFISENVDITMFRSLGIRNDGLPVGGFTQ 321          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A518C2T7_9BACT (Uncharacterized protein n=2 Tax=Pirellulaceae TaxID=2691357 RepID=A0A518C2T7_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 6.730e-22
Identity = 56/119 (47.06%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGL 357
            TN F+VGET+Y LT +G    ++  WAS+ +L + GT   P+ LA T E INS    G       D+    ++LFGS+HPGGC  LM DASV+F+ ET+DL  Y+ LG  +D LP GGL
Sbjct:  203 TNIFMVGETRYCLTPSGRPDGYHSGWASATKLDSWGT---PLVLAATREQINSDPRDGI----KNDTLNIMTKLFGSYHPGGCMFLMGDASVHFIPETIDLATYQSLGKIDDGLPTGGL 314          
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Match: A0A517T8G8_9PLAN (Uncharacterized protein n=1 Tax=Calycomorphotria hydatis TaxID=2528027 RepID=A0A517T8G8_9PLAN)

HSP 1 Score: 96.3 bits (238), Expect = 2.470e-21
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    4 NTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEPINSRIPTGSVPKG-STDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMDLNIYRQLGIRNDSLPIGGL 357
            N F+ GE+ Y+ T + T S+ Y SWAS+    T G  P    LA     +N+ +    +P   S D R   + LFGS+H GGC+M+MAD SV+F+SE +DL+ +R LGIR+D+LP+GGL
Sbjct:  222 NVFMAGESHYNTTRSNTRSSVYQSWASASNPSTKG--PLLGNLAAADGGVNAGVTDPQLPNSPSADPRDETAYLFGSYHVGGCHMMMADGSVHFISENIDLDTFRSLGIRDDALPVGGL 338          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127530.5550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518JM81_9BACT7.030e-7796.69Type II secretion system protein G n=6 Tax=Rosisti... [more]
A0A5C6CIC2_9BACT1.480e-6686.55Uncharacterized protein n=2 Tax=Novipirellula gale... [more]
A4A1C2_9BACT5.770e-6384.03Uncharacterized protein n=2 Tax=Blastopirellula ma... [more]
A0A7V8V6J9_9BACT4.650e-6280.33Uncharacterized protein n=2 Tax=Bremerella alba Ta... [more]
A3ZRN0_9BACT1.200e-2347.50Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
A0A4V0I458_9BACT1.060e-2247.50Uncharacterized protein n=1 Tax=Gemmataceae bacter... [more]
A0A2S8GT17_9BACT3.450e-2247.86Prepilin-type cleavage/methylation domain-containi... [more]
A6C7I8_9PLAN3.650e-2244.17Uncharacterized protein n=2 Tax=Gimesia maris TaxI... [more]
A0A518C2T7_9BACT6.730e-2247.06Uncharacterized protein n=2 Tax=Pirellulaceae TaxI... [more]
A0A517T8G8_9PLAN2.470e-2144.54Uncharacterized protein n=1 Tax=Calycomorphotria h... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127530contigM-pyrifera_M_contig127530:3..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score207.6
Seed ortholog evalue3.3e-51
Seed eggNOG ortholog314230.DSM3645_20167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Prokaryotic N-terminal methylation motif
EggNOG OGsCOG4968@1,COG4968@2
COG Functional cat.NU
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.7768133-CDS-M-pyrifera_M_contig127530:2..3681622815789.7768133-CDS-M-pyrifera_M_contig127530:2..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127530 3..368 +
1692277570.6094232-CDS-M-pyrifera_M_contig127530:2..3681692277570.6094232-CDS-M-pyrifera_M_contig127530:2..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127530 3..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127530.5550.1prot_M-pyrifera_M_contig127530.5550.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127530 3..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127530.5550.1

>prot_M-pyrifera_M_contig127530.5550.1 ID=prot_M-pyrifera_M_contig127530.5550.1|Name=mRNA_M-pyrifera_M_contig127530.5550.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
TNTFLVGETKYHLTEAGTVSTFYLSWASSIRLGTGGTMPHPVTLAGTYEP
INSRIPTGSVPKGSTDSRTGYSRLFGSFHPGGCNMLMADASVNFVSETMD
LNIYRQLGIRNDSLPIGGLPQ*
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mRNA from alignment at M-pyrifera_M_contig127530:3..368+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127530.5550.1 ID=mRNA_M-pyrifera_M_contig127530.5550.1|Name=mRNA_M-pyrifera_M_contig127530.5550.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig127530:3..368+ (Macrocystis pyrifera P11B4 male)
ACCAACACCTTTTTGGTCGGCGAAACCAAGTACCACCTGACCGAAGCGGG CACCGTTTCGACCTTCTACCTCAGCTGGGCCTCTTCGATTCGCCTCGGCA CCGGCGGAACGATGCCTCACCCCGTGACGCTGGCTGGAACGTACGAACCG ATCAATTCTCGCATCCCGACCGGCAGCGTCCCCAAGGGAAGCACCGATTC ACGCACCGGATACTCCCGTCTGTTCGGCAGCTTTCACCCCGGCGGTTGCA ACATGTTGATGGCCGACGCGTCGGTGAACTTTGTCAGCGAAACAATGGAC CTCAACATCTATCGCCAACTCGGCATCCGCAACGATTCGCTGCCAATCGG AGGACTGCCACAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127530:3..368+

>mRNA_M-pyrifera_M_contig127530.5550.1 ID=mRNA_M-pyrifera_M_contig127530.5550.1|Name=mRNA_M-pyrifera_M_contig127530.5550.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig127530:3..368+ (Macrocystis pyrifera P11B4 male)
ACCAACACCTTTTTGGTCGGCGAAACCAAGTACCACCTGACCGAAGCGGG
CACCGTTTCGACCTTCTACCTCAGCTGGGCCTCTTCGATTCGCCTCGGCA
CCGGCGGAACGATGCCTCACCCCGTGACGCTGGCTGGAACGTACGAACCG
ATCAATTCTCGCATCCCGACCGGCAGCGTCCCCAAGGGAAGCACCGATTC
ACGCACCGGATACTCCCGTCTGTTCGGCAGCTTTCACCCCGGCGGTTGCA
ACATGTTGATGGCCGACGCGTCGGTGAACTTTGTCAGCGAAACAATGGAC
CTCAACATCTATCGCCAACTCGGCATCCGCAACGATTCGCTGCCAATCGG
AGGACTGCCACAATGAACCAACACCTTTTTGGTCGGCGAAACCAAGTACC
ACCTGACCGAAGCGGGCACCGTTTCGACCTTCTACCTCAGCTGGGCCTCT
TCGATTCGCCTCGGCACCGGCGGAACGATGCCTCACCCCGTGACGCTGGC
TGGAACGTACGAACCGATCAATTCTCGCATCCCGACCGGCAGCGTCCCCA
AGGGAAGCACCGATTCACGCACCGGATACTCCCGTCTGTTCGGCAGCTTT
CACCCCGGCGGTTGCAACATGTTGATGGCCGACGCGTCGGTGAACTTTGT
CAGCGAAACAATGGACCTCAACATCTATCGCCAACTCGGCATCCGCAACG
ATTCGCTGCCAATCGGAGGACTGCCACAATGA
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