mRNA_M-pyrifera_M_contig127503.5541.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127503.5541.1
Unique NamemRNA_M-pyrifera_M_contig127503.5541.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A7S4KF82_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KF82_9EUKA)

HSP 1 Score: 155 bits (392), Expect = 9.920e-43
Identity = 82/139 (58.99%), Postives = 110/139 (79.14%), Query Frame = 1
Query:    1 IDSALVRA------NVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSFMDVIERTGNVFAFD 399
            IDSA+++        VK+Q+EELVELQNGCVCCTLRADL K+VA +A+QG FD +VIECTGMAEP+QVA+SFLMALA+ ++E++   ED     + ++ + A LPSL+ LARLDT+VTVID+ SF+DV+++TGN+F  D
Sbjct:   57 IDSAIIKNLGERSDAVKEQSEELVELQNGCVCCTLRADLVKSVAELAKQGHFDHVVIECTGMAEPVQVASSFLMALAISENERSTLNED-----QLQSPMFAGLPSLDRLARLDTLVTVIDTGSFLDVLKKTGNIFVTD 190          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A2D4CBR5_PYTIN (cobW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBR5_PYTIN)

HSP 1 Score: 103 bits (256), Expect = 2.600e-23
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 IDSALV-RANVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDD--DEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSFMDVIERTGNVFAFD 399
            ID+ LV ++ V Q+ E+LV L+NGC+CCTLR DL + +A +A  G  D+IVIE +G++EPMQVA +F   L   D  DE     EDD             LP L  LARLDT VTV+D+SSF  V E T  +   D
Sbjct:   50 IDANLVAKSGVLQRKEQLVRLENGCICCTLRVDLMEEIARIADAGEVDYIVIESSGISEPMQVAETFAFELPTRDPSDESKRRHEDDTLR----------LPQLRDLARLDTCVTVVDASSFFHVFEDTRLLMQLD 175          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: C5DEM5_LACTC (KLTH0C10450p n=2 Tax=Lachancea TaxID=300275 RepID=C5DEM5_LACTC)

HSP 1 Score: 100 bits (250), Expect = 3.230e-22
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 IDSALVRA-NVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSFMDVIERT 378
            IDS+LV+A NV Q+ E+L+ELQNGC+CCTLR DL + +  +  +G FD+IVIE TG+AEPMQVA +F +  +   D   E     P   EK     +++  L  +A+LDT VTVID+ +F+  I+ T
Sbjct:   52 IDSSLVQAHNVCQKEEKLIELQNGCICCTLRGDLLEELVGIGERGEFDYIVIESTGIAEPMQVAETFSVEFS---DILLETPGGIPENEEKLLRKVSDMGGLQAIAKLDTCVTVIDALNFLSNIQTT 175          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A316VV45_9BASI (CobW-domain-containing protein n=1 Tax=Ceraceosorus guamensis TaxID=1522189 RepID=A0A316VV45_9BASI)

HSP 1 Score: 99.4 bits (246), Expect = 1.170e-21
Identity = 61/125 (48.80%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    1 IDSALV-RANVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFL-----MALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGL---ARLDTMVTVIDS 348
            ID AL+ +A VKQ TE LVE+QNGC+CCTLR DL + VA++A++G  D++VIE TG++EPMQVA +F      M +A  +D K E  ED+  E+ K+ A  A++ +  GL   +RLDT VT++D+
Sbjct:  102 IDGALLSQAKVKQTTERLVEMQNGCICCTLRGDLLEEVAALAQEGGVDYLVIESTGISEPMQVAETFSEEFSQMHVAAAEDLKAEMAEDE--ESAKQNAKVAQILAAGGLPAISRLDTCVTLVDA 224          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A830H8J9_9CHLO (CobW C-terminal domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8J9_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 3.860e-21
Identity = 57/120 (47.50%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 IDSALVRAN-VKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSF 357
            ID++LV+ N + Q+ E++VEL NGC+CCTLR DL K +A +A+ G FD IVIE TG+++P++VA +F + L  ++D++N    DD       AAL  +  SLN +A+LDT VTV+D +SF
Sbjct:   85 IDASLVKGNKLVQREEKMVELHNGCICCTLREDLIKELAGLAKDGRFDAIVIESTGVSDPIEVAETFSVEL--NEDDENSKAPDDWERNSLVAALGGKA-SLNEVAKLDTCVTVVDCASF 201          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A0D1WR41_EXOME (CobW C-terminal domain-containing protein n=3 Tax=Exophiala mesophila TaxID=212818 RepID=A0A0D1WR41_EXOME)

HSP 1 Score: 97.8 bits (242), Expect = 4.030e-21
Identity = 57/124 (45.97%), Postives = 84/124 (67.74%), Query Frame = 1
Query:    1 IDSALVRANVKQQTEE-LVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNE----AEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSF 357
            ID++L++ +V  QT+E L++L+NGC+CCTLR DL + +A +AR G +D+IVIE TG++EPMQVA +F    A    E +E    +E+D+     K+ +   EL  L  L RLDT+VT+IDS +F
Sbjct:   60 IDASLIKRHVVSQTQERLIQLENGCICCTLRGDLLEELARLARHGEYDYIVIESTGISEPMQVAETFTAEFATAMIEASEEGLISEQDEDQRIIKEIS---ELGGLQKLVRLDTLVTMIDSFNF 180          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A3A0F9G8_9PROT (CobW C-terminal domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0F9G8_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 5.070e-21
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 IDSALVR---ANVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSF 357
            ID+ALVR   A + +Q E LVE+ NGC+CCTLR DL K VA++AR+G FD+++IE TG++EPM VAA+F                         A  +AE  SL+ +ARLDTMVTV+D+ +F
Sbjct:   45 IDAALVRDGGAQLSRQDERLVEMSNGCICCTLRDDLLKEVAALAREGRFDYLLIESTGISEPMPVAATF-------------------------AFEDAEGHSLSEVARLDTMVTVVDARNF 141          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A1V6RX05_9EURO (cobW domain-containing protein (Fragment) n=1 Tax=Penicillium vulpinum TaxID=29845 RepID=A0A1V6RX05_9EURO)

HSP 1 Score: 95.9 bits (237), Expect = 5.670e-21
Identity = 53/127 (41.73%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 IDSALVRAN-VKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSFMDVIERT 378
            ID+ L++ + V Q TE+L+ LQNGC+CCTLR DL   +A++ +Q   D+++IE TG++EPMQVA +F    +    E  +   +D A+A+K      +L  L+ +ARLDT VTVID+ +F+   + T
Sbjct:   69 IDATLIQNHRVSQTTEKLIRLQNGCICCTLRGDLLSELAALTKQNEVDYVIIESTGISEPMQVAETFTAEFSSAMLEAEDQIANDDADAKKILNEIVDLGGLHTMARLDTTVTVIDAFNFLSSFDTT 195          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: G8ZY77_TORDC (CobW C-terminal domain-containing protein n=1 Tax=Torulaspora delbrueckii (strain ATCC 10662 / CBS 1146 / NBRC 0425 / NCYC 2629 / NRRL Y-866) TaxID=1076872 RepID=G8ZY77_TORDC)

HSP 1 Score: 96.3 bits (238), Expect = 1.290e-20
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 IDSALVRAN-VKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAAL----EAELPSLNGLARLDTMVTVIDSSSFMDVIERT 378
            +D+ALV+ + V  Q E+L++LQNGC+CCTLR DL + +  ++ QGAFD+IVIE TG+AEPMQVA +F    +       +A  D P    +   L      EL  L  +A++DT VTV+D+++F+  IE T
Sbjct:   50 VDAALVQQHKVSNQEEKLIQLQNGCICCTLRGDLLEELLGLSEQGAFDYIVIESTGIAEPMQVAETFSTDFS-------QALLDTPGGIPENEELLLKRVVELGGLEKVAKIDTCVTVVDAANFLSNIETT 173          
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Match: A0A1G4M669_LACFM (LAFE_0A00276g1_1 n=1 Tax=Lachancea fermentati TaxID=4955 RepID=A0A1G4M669_LACFM)

HSP 1 Score: 96.3 bits (238), Expect = 1.370e-20
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    1 IDSALVRA-NVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIVIECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPSLNGLARLDTMVTVIDSSSFMDVIERT 378
            IDS+LV+  NV Q+ E+L++LQNGC+CCTLR DL + +  +  +G FD+IVIE TG+AEPMQVA +F +  +   +   E     P + EK     + +  L  +AR+DT VTVID+ +F+  I+ T
Sbjct:   52 IDSSLVQTHNVCQKEEKLIQLQNGCICCTLRGDLLEELVGIGERGEFDYIVIESTGIAEPMQVAETFSVEFS---NILLETPGGIPEDEEKLLKKLSSMGGLQAIARIDTCVTVIDALNFLSNIQTT 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127503.5541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KF82_9EUKA9.920e-4358.99Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A2D4CBR5_PYTIN2.600e-2346.32cobW domain-containing protein n=1 Tax=Pythium ins... [more]
C5DEM5_LACTC3.230e-2246.46KLTH0C10450p n=2 Tax=Lachancea TaxID=300275 RepID=... [more]
A0A316VV45_9BASI1.170e-2148.80CobW-domain-containing protein n=1 Tax=Ceraceosoru... [more]
A0A830H8J9_9CHLO3.860e-2147.50CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A0D1WR41_EXOME4.030e-2145.97CobW C-terminal domain-containing protein n=3 Tax=... [more]
A0A3A0F9G8_9PROT5.070e-2146.72CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A1V6RX05_9EURO5.670e-2141.73cobW domain-containing protein (Fragment) n=1 Tax=... [more]
G8ZY77_TORDC1.290e-2043.51CobW C-terminal domain-containing protein n=1 Tax=... [more]
A0A1G4M669_LACFM1.370e-2044.09LAFE_0A00276g1_1 n=1 Tax=Lachancea fermentati TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127503contigM-pyrifera_M_contig127503:2..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score102.4
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog381046.XP_002552674.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cobalamin synthesis protein cobW C-terminal domain
EggNOG OGs38GI6@33154,3NXPE@4751,3QNCM@4890,3RT2U@4891,3S0WS@4893,COG0523@1,KOG2743@2759
COG Functional cat.H
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815789.4160717-CDS-M-pyrifera_M_contig127503:1..4001622815789.4160717-CDS-M-pyrifera_M_contig127503:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127503 2..400 +
1692277570.4314053-CDS-M-pyrifera_M_contig127503:1..4001692277570.4314053-CDS-M-pyrifera_M_contig127503:1..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127503 2..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127503.5541.1prot_M-pyrifera_M_contig127503.5541.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127503 2..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127503.5541.1

>prot_M-pyrifera_M_contig127503.5541.1 ID=prot_M-pyrifera_M_contig127503.5541.1|Name=mRNA_M-pyrifera_M_contig127503.5541.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
IDSALVRANVKQQTEELVELQNGCVCCTLRADLGKAVASMARQGAFDFIV
IECTGMAEPMQVAASFLMALAVDDDEKNEAEEDDPAEAEKKAALEAELPS
LNGLARLDTMVTVIDSSSFMDVIERTGNVFAFD
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mRNA from alignment at M-pyrifera_M_contig127503:2..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127503.5541.1 ID=mRNA_M-pyrifera_M_contig127503.5541.1|Name=mRNA_M-pyrifera_M_contig127503.5541.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig127503:2..400+ (Macrocystis pyrifera P11B4 male)
ATCGACTCGGCTCTCGTCCGCGCCAACGTCAAGCAGCAGACCGAGGAGTT GGTCGAGCTCCAGAACGGATGCGTCTGTTGCACTCTCAGAGCCGACTTGG GGAAAGCAGTGGCGTCTATGGCTCGCCAGGGAGCCTTCGATTTCATTGTC ATCGAGTGCACGGGCATGGCAGAACCAATGCAGGTGGCTGCGTCGTTCTT GATGGCTCTGGCCGTCGACGACGATGAAAAAAATGAGGCAGAAGAGGATG ATCCTGCTGAGGCAGAGAAGAAGGCGGCTCTCGAGGCAGAGCTTCCGTCG CTCAACGGACTCGCCCGACTTGACACCATGGTGACAGTCATCGACAGCTC GTCATTCATGGACGTCATTGAGCGGACTGGCAATGTGTTTGCATTTGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127503:2..400+

>mRNA_M-pyrifera_M_contig127503.5541.1 ID=mRNA_M-pyrifera_M_contig127503.5541.1|Name=mRNA_M-pyrifera_M_contig127503.5541.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig127503:2..400+ (Macrocystis pyrifera P11B4 male)
ATCGACTCGGCTCTCGTCCGCGCCAACGTCAAGCAGCAGACCGAGGAGTT
GGTCGAGCTCCAGAACGGATGCGTCTGTTGCACTCTCAGAGCCGACTTGG
GGAAAGCAGTGGCGTCTATGGCTCGCCAGGGAGCCTTCGATTTCATTGTC
ATCGAGTGCACGGGCATGGCAGAACCAATGCAGGTGGCTGCGTCGTTCTT
GATGGCTCTGGCCGTCGACGACGATGAAAAAAATGAGGCAGAAGAGGATG
ATCCTGCTGAGGCAGAGAAGAAGGCGGCTCTCGAGGCAGAGCTTCCGTCG
CTCAACGGACTCGCCCGACTTGACACCATGGTGACAGTCATCGACAGCTC
GTCATTCATGGACGTCATTGAGCGGACTGGCAATGTGTTTGCATTTGATA
TCGACTCGGCTCTCGTCCGCGCCAACGTCAAGCAGCAGACCGAGGAGTTG
GTCGAGCTCCAGAACGGATGCGTCTGTTGCACTCTCAGAGCCGACTTGGG
GAAAGCAGTGGCGTCTATGGCTCGCCAGGGAGCCTTCGATTTCATTGTCA
TCGAGTGCACGGGCATGGCAGAACCAATGCAGGTGGCTGCGTCGTTCTTG
ATGGCTCTGGCCGTCGACGACGATGAAAAAAATGAGGCAGAAGAGGATGA
TCCTGCTGAGGCAGAGAAGAAGGCGGCTCTCGAGGCAGAGCTTCCGTCGC
TCAACGGACTCGCCCGACTTGACACCATGGTGACAGTCATCGACAGCTCG
TCATTCATGGACGTCATTGAGCGGACTGGCAATGTGTTTGCATTTGAT
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