mRNA_M-pyrifera_M_contig127465.5531.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127465.5531.1
Unique NamemRNA_M-pyrifera_M_contig127465.5531.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A6A8Q2N5_9BACT (DUF3078 domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q2N5_9BACT)

HSP 1 Score: 179 bits (454), Expect = 2.860e-53
Identity = 83/157 (52.87%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            +G++Y    AGGDSLIS +F+PAYF EG GI  +PN + + E GV LKQTIV DD L   Y ++ G N RSEGG+T G   ++ +MEN  + +S+ETFTNL +   +TDI W N + G+INK +SA FQFE+RYD D+S+++QLKQV +AG+TL+I+
Sbjct:  135 EGYEYNAKVAGGDSLISNFFAPAYFNEGIGISYQPNTELTFEFGVGLKQTIVNDDSLTENYGLEPGDNFRSEGGLTTGITLQKEIMENVNYASSLETFTNLHMTIDKTDIMWVNELAGQINKTISASFQFEMRYDADFSSKLQLKQVLSAGVTLSIF 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A2D8CFK0_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CFK0_9BACT)

HSP 1 Score: 174 bits (442), Expect = 1.840e-51
Identity = 79/156 (50.64%), Postives = 111/156 (71.15%), Query Frame = 1
Query:    4 GFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            GF+Y+   AGGDSLIS + +P YF EG G+   P + F  E G+ LKQTI++D  L   Y ++QG N R EGG+T G  +++ + EN  + +S+ETFTN LIP S+TD+ W N + G+IN  +SA FQFELRYD+D+S+ VQLKQV +AG+++N+Y
Sbjct:  136 GFNYDAKVAGGDSLISNFMAPGYFNEGIGLAYAPTQSFIFEAGLGLKQTIISDGELAPNYGLNQGDNFRGEGGLTTGINFEKAIAENILYSSSLETFTNFLIPISETDVAWGNELVGQINNVVSASFQFELRYDNDFSSEVQLKQVLSAGVSVNLY 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A1B6Y8S2_9BACT (Uncharacterized protein n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y8S2_9BACT)

HSP 1 Score: 172 bits (437), Expect = 1.010e-50
Identity = 78/157 (49.68%), Postives = 114/157 (72.61%), Query Frame = 1
Query:    1 DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            DG++Y+   AGGDSLIS +FSPAY  EG G+E   +     E G+ALKQT ++D  L+  Y + +G+  RSEGG+T G  ++ TV EN ++ ++IETFT+   P S+TD++W+N + G+IN  +SA FQFE+RYDDD+S+ VQ+KQV +AGI++N+Y
Sbjct:  134 DGYNYDAKVAGGDSLISGFFSPAYLTEGAGLEYNASPSLQLEAGLALKQTFISDGDLSPNYGLPEGETFRSEGGLTTGISFQTTVAENIQYSSNIETFTSFTDPVSETDVFWSNELVGQINSLISASFQFEMRYDDDFSSEVQIKQVLSAGISVNLY 290          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: UPI0003822102 (DUF3078 domain-containing protein n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI0003822102)

HSP 1 Score: 170 bits (431), Expect = 8.340e-50
Identity = 80/156 (51.28%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    4 GFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            G+DY   +   D LIS + +PAY +EG G+   P    + E G+ALKQTIV DD L + Y + Q KNIR EGG+T G  +++ V EN  + +S+ETFTN LIP S+TD+ W N + G+IN  +SA FQFELRYD+D+S+ VQLKQV +AGI++N+Y
Sbjct:  136 GYDYSTEDGVPDVLISDFLAPAYIMEGVGLAFDPGSGLTFEAGLALKQTIVNDDSLKSLYNVAQDKNIRGEGGLTTGINFEKEVFENILYTSSLETFTNFLIPVSETDVKWGNELVGQINSLVSASFQFELRYDNDFSSEVQLKQVLSAGISVNLY 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A3D1G7D3_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G7D3_9BACT)

HSP 1 Score: 169 bits (428), Expect = 2.360e-49
Identity = 81/159 (50.94%), Postives = 112/159 (70.44%), Query Frame = 1
Query:    1 DGFDY--EKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            DG++Y  +    GGDSLIS +F+PAY  EG GI  + N     E G+ALKQT ++D  L   Y + QG   RSEGG+T G  ++  V EN ++ +++ETFTN LIP SQTD+YWAN + G+IN  +SA FQFELRYD+D+S+ +Q+KQV +AGI++N+Y
Sbjct:  133 DGYEYGAKMNPVGGDSLISGFFAPAYLTEGAGITFQANPKLQVEAGLALKQTFISDGDLAPNYGLTQGDTFRSEGGLTTGISFQSDVAENIKYSSNLETFTNFLIPISQTDVYWANELVGQINSIVSASFQFELRYDNDFSSDLQIKQVLSAGISVNLY 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: UPI0003669134 (DUF3078 domain-containing protein n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI0003669134)

HSP 1 Score: 169 bits (428), Expect = 2.360e-49
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 1
Query:    4 GFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            G+ Y +  AG DSLIS +F+PAY  EG G+E   + +   E GVALKQT + D  L   Y +DQG   RSEGGIT G   +R V EN ++ +S++TFTNL  P S TD++WAN + G+IN  +SA FQFELRYDDD+S+ +Q+KQV +AGI++N+Y
Sbjct:  136 GYKYGEGFAGSDSLISDFFAPAYLTEGAGLEYNASPNLQFEAGVALKQTFIRDGDLAPNYGLDQGDTFRSEGGITTGITLQRQVAENIKYSSSLDTFTNLNQPISSTDVFWANELVGQINSLISASFQFELRYDDDFSSEIQVKQVLSAGISVNLY 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A2D9FUN5_9BACT (Uncharacterized protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FUN5_9BACT)

HSP 1 Score: 166 bits (419), Expect = 5.770e-48
Identity = 76/157 (48.41%), Postives = 113/157 (71.97%), Query Frame = 1
Query:    1 DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            +G++Y   +   D LIS  F+PAY +EG G+   P++ F+ E G+ALKQTIVTDD L   Y + Q K +R EGG+T G  +++ V E+  + +++ETFTN LIP S+TD+ W+N + G+IN  +SA FQFELRYD+D+S+ +QLKQV +AGI++++Y
Sbjct:  138 EGYEYSTEDGVPDVLISDLFAPAYVMEGVGVAYAPSDAFTFETGLALKQTIVTDDDLKPLYGVAQDKEVRGEGGLTTGINFEKEVFESIFYTSALETFTNFLIPVSETDVKWSNEVVGQINSLVSASFQFELRYDNDFSSEIQLKQVLSAGISVSLY 294          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: UPI000CD874E2 (DUF3078 domain-containing protein n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD874E2)

HSP 1 Score: 163 bits (412), Expect = 6.010e-47
Identity = 76/157 (48.41%), Postives = 104/157 (66.24%), Query Frame = 1
Query:    1 DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            DGF+Y       D  IS + +P Y  E  G+  KP      E G+ LKQT VT+D L  +Y +D G+N RSEGG+T G  Y++ V EN  + +++ETFTN LIPF +TD+ W N + G+IN  +SA FQFELRYD+D+S  +QLKQV +AGI++N+Y
Sbjct:  135 DGFEYTADPNVADVRISSFMAPGYLSESVGLSYKPAPAIIFEAGLGLKQTFVTEDELAPEYGLDPGENFRSEGGLTTGIYYEKEVFENILYTSAVETFTNFLIPFDETDVVWGNELVGKINSLISASFQFELRYDNDFSREIQLKQVLSAGISVNLY 291          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: A0A2E6N5Z4_9BACT (Uncharacterized protein n=2 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N5Z4_9BACT)

HSP 1 Score: 157 bits (397), Expect = 8.970e-45
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 1
Query:    1 DGFDY--EKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            DGF+Y  ++   G DSLIS +F+PAY  EG GI     E F  E G+ LKQT V  + L + Y + QG N R EGG+T G  +++ V +N ++ T IETFTNLL P ++TD+YW N   GRIN  L A  QFELRYD D+S  +QLKQV +AG++++++
Sbjct:  126 DGFEYNAKRNPTGTDSLISGFFAPAYVTEGIGISFNAEESFQMEAGLGLKQTFVMREDLASNYGLRQGVNYRFEGGLTTGITFQKEVFKNVQYNTDIETFTNLLHPINETDVYWTNEFIGRINSTLRASLQFELRYDYDFSKDIQLKQVLSAGVSMDLF 284          
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Match: UPI001F2B6DB6 (DUF3078 domain-containing protein n=1 Tax=Rhodohalobacter sp. 614A TaxID=2908649 RepID=UPI001F2B6DB6)

HSP 1 Score: 155 bits (392), Expect = 2.140e-44
Identity = 71/157 (45.22%), Postives = 106/157 (67.52%), Query Frame = 1
Query:    1 DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQTIVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTNLLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAAGITLNIY 471
            +G++Y       DSLIS + SPAY  E  G+   P++ F+ EVG+ LKQTI+ +  L+  Y ++ G++  SEGG++ G  YK+ +  N  +  S ETFTNLL    +TDIYW N ++G INK +SA FQFELRYD+D+S++ Q+K+V +AG++L I+
Sbjct:   96 EGYNYNAGVGESDSLISDFLSPAYITESMGLAYTPDDFFTMEVGIGLKQTIIKNGDLSVNYGLNPGEHFVSEGGVSTGLNYKKEIFTNIYYTASFETFTNLLNGLKKTDIYWYNELHGEINKVVSATFQFELRYDNDFSSQFQMKEVLSAGVSLKIF 252          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127465.5531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A8Q2N5_9BACT2.860e-5352.87DUF3078 domain-containing protein n=1 Tax=Balneola... [more]
A0A2D8CFK0_9BACT1.840e-5150.64Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A1B6Y8S2_9BACT1.010e-5049.68Uncharacterized protein n=7 Tax=Bacteroidetes/Chlo... [more]
UPI00038221028.340e-5051.28DUF3078 domain-containing protein n=1 Tax=Gracilim... [more]
A0A3D1G7D3_9BACT2.360e-4950.94Uncharacterized protein n=1 Tax=Balneolaceae bacte... [more]
UPI00036691342.360e-4951.92DUF3078 domain-containing protein n=1 Tax=Balneola... [more]
A0A2D9FUN5_9BACT5.770e-4848.41Uncharacterized protein n=2 Tax=Balneolaceae TaxID... [more]
UPI000CD874E26.010e-4748.41DUF3078 domain-containing protein n=1 Tax=Gracilim... [more]
A0A2E6N5Z4_9BACT8.970e-4548.43Uncharacterized protein n=2 Tax=Balneola sp. TaxID... [more]
UPI001F2B6DB62.140e-4445.22DUF3078 domain-containing protein n=1 Tax=Rhodohal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127465contigM-pyrifera_M_contig127465:31..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score173.3
Seed ortholog evalue8.9e-41
Seed eggNOG ortholog1121930.AQXG01000012_gene3222
Preferred nameydiY
KEGG koko:K07283
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3078)
EggNOG OGs1IPQ5@117747,4NGB2@976,COG3137@1,COG3137@2
COG Functional cat.M
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.968394-CDS-M-pyrifera_M_contig127465:30..5041622815788.968394-CDS-M-pyrifera_M_contig127465:30..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127465 31..504 -
1692277570.2678983-CDS-M-pyrifera_M_contig127465:30..5041692277570.2678983-CDS-M-pyrifera_M_contig127465:30..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127465 31..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127465.5531.1prot_M-pyrifera_M_contig127465.5531.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127465 31..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127465.5531.1

>prot_M-pyrifera_M_contig127465.5531.1 ID=prot_M-pyrifera_M_contig127465.5531.1|Name=mRNA_M-pyrifera_M_contig127465.5531.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
DGFDYEKAEAGGDSLISRWFSPAYFIEGFGIEIKPNEDFSAEVGVALKQT
IVTDDRLNTQYRIDQGKNIRSEGGITFGAQYKRTVMENTEFVTSIETFTN
LLIPFSQTDIYWANSINGRINKYLSAVFQFELRYDDDYSNRVQLKQVFAA
GITLNIY*
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mRNA from alignment at M-pyrifera_M_contig127465:31..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127465.5531.1 ID=mRNA_M-pyrifera_M_contig127465.5531.1|Name=mRNA_M-pyrifera_M_contig127465.5531.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig127465:31..504- (Macrocystis pyrifera P11B4 male)
GATGGTTTTGACTATGAAAAAGCTGAAGCTGGAGGAGATTCATTAATCTC AAGATGGTTCTCGCCAGCCTATTTTATTGAAGGATTCGGAATAGAAATAA AGCCTAACGAAGATTTTAGCGCTGAGGTTGGAGTAGCTTTAAAGCAAACC ATTGTAACAGATGATCGGCTAAATACCCAATACAGAATAGATCAAGGTAA AAATATTCGATCAGAAGGCGGTATTACTTTTGGTGCACAGTATAAAAGAA CTGTTATGGAAAATACTGAATTTGTTACAAGTATTGAGACTTTTACCAAT CTTTTAATTCCCTTTAGTCAAACTGATATTTATTGGGCAAACTCAATAAA CGGGCGAATTAACAAATACCTGAGCGCAGTATTTCAGTTTGAGCTTCGTT ACGACGATGATTATTCTAATCGGGTCCAACTTAAGCAAGTATTTGCTGCT GGTATAACTCTCAATATTTATTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127465:31..504-

>mRNA_M-pyrifera_M_contig127465.5531.1 ID=mRNA_M-pyrifera_M_contig127465.5531.1|Name=mRNA_M-pyrifera_M_contig127465.5531.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig127465:31..504- (Macrocystis pyrifera P11B4 male)
GATGGTTTTGACTATGAAAAAGCTGAAGCTGGAGGAGATTCATTAATCTC
AAGATGGTTCTCGCCAGCCTATTTTATTGAAGGATTCGGAATAGAAATAA
AGCCTAACGAAGATTTTAGCGCTGAGGTTGGAGTAGCTTTAAAGCAAACC
ATTGTAACAGATGATCGGCTAAATACCCAATACAGAATAGATCAAGGTAA
AAATATTCGATCAGAAGGCGGTATTACTTTTGGTGCACAGTATAAAAGAA
CTGTTATGGAAAATACTGAATTTGTTACAAGTATTGAGACTTTTACCAAT
CTTTTAATTCCCTTTAGTCAAACTGATATTTATTGGGCAAACTCAATAAA
CGGGCGAATTAACAAATACCTGAGCGCAGTATTTCAGTTTGAGCTTCGTT
ACGACGATGATTATTCTAATCGGGTCCAACTTAAGCAAGTATTTGCTGCT
GGTATAACTCTCAATATTTATTAAGATGGTTTTGACTATGAAAAAGCTGA
AGCTGGAGGAGATTCATTAATCTCAAGATGGTTCTCGCCAGCCTATTTTA
TTGAAGGATTCGGAATAGAAATAAAGCCTAACGAAGATTTTAGCGCTGAG
GTTGGAGTAGCTTTAAAGCAAACCATTGTAACAGATGATCGGCTAAATAC
CCAATACAGAATAGATCAAGGTAAAAATATTCGATCAGAAGGCGGTATTA
CTTTTGGTGCACAGTATAAAAGAACTGTTATGGAAAATACTGAATTTGTT
ACAAGTATTGAGACTTTTACCAATCTTTTAATTCCCTTTAGTCAAACTGA
TATTTATTGGGCAAACTCAATAAACGGGCGAATTAACAAATACCTGAGCG
CAGTATTTCAGTTTGAGCTTCGTTACGACGATGATTATTCTAATCGGGTC
CAACTTAAGCAAGTATTTGCTGCTGGTATAACTCTCAATATTTATTAA
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