mRNA_M-pyrifera_M_contig12744.5524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12744.5524.1
Unique NamemRNA_M-pyrifera_M_contig12744.5524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A1L6I941_9BURK (GNAT family N-acetyltransferase n=2 Tax=Paraburkholderia sp. SOS3 TaxID=1926494 RepID=A0A1L6I941_9BURK)

HSP 1 Score: 110 bits (274), Expect = 2.530e-26
Identity = 67/166 (40.36%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGGV-VGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A+ EGWN    DAT FQAADP+GFFI      EPV S+S VR+G    FIGLYI  PEFRG+G G   ++ AM  L G  +G D V +Q      S  + +  + RFQG+      P   R         R L    ++ +D+ H PA R +F+  W+  P  VAL
Sbjct:   24 AQREGWNPGLHDATCFQAADPDGFFIGTLG-GEPVGSISAVRYGEHFGFIGLYIVRPEFRGKGFGYRIWQHAMTYLAGRNIGLDGVVEQQDNYRKSGFQLAHRNVRFQGIAR----PRRARMPSVAIKELRGLPFAQLMRYDQSHFPASRERFLANWIVQPDSVAL 184          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A225MJX0_9BURK (GNAT family N-acetyltransferase n=1 Tax=Candidimonas nitroreducens TaxID=683354 RepID=A0A225MJX0_9BURK)

HSP 1 Score: 102 bits (254), Expect = 2.370e-23
Identity = 68/167 (40.72%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGG-VVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGH-RRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A  EGWN    DA  F AADP+GF +    D  P+AS+S VR+G D  F+GLYI APE RG+G+G A ++  ++ LG   VG D V  Q G    S       HR  +   A   P       E  G    R L    V D+DR   PA R  F+  WL  PGH AL
Sbjct:   24 AAREGWNPGLHDAHCFYAADPQGFLVGLL-DGVPIASISVVRYGSDYGFLGLYIVAPEHRGKGYGWALWQAGLERLGQRAVGLDGVLAQQGNYRRSGFVLE--HRNIRYATAGSAPHGSPDAAEHSGLVDLRGLAAAQVRDYDRPFFPAGRDTFLQAWLHAPGHHAL 187          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A5B0H3W0_9BURK (GNAT family N-acetyltransferase n=1 Tax=Paraburkholderia panacisoli TaxID=2603818 RepID=A0A5B0H3W0_9BURK)

HSP 1 Score: 100 bits (250), Expect = 6.440e-23
Identity = 63/166 (37.95%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGGV-VGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A  EGWN    DA  FQAADP GFF+ +    EP+ S+S V +     FIGLYI  P+FRG+G GL  +R AM  LG   +G D V  Q      S  R +  + RF+GV    G        +   ++        + ++DR   PAPR+ F+  W+A P  VAL
Sbjct:   13 AAQEGWNPGCHDAACFQAADPRGFFVGELH-GEPIGSISAVAYDEHFGFIGLYIVRPDFRGKGLGLRIWRHAMAYLGERNIGLDGVVAQQANYRKSEFRLAHRNIRFRGVARGAGSAATCNLADVPFNQ--------LAEYDRQLFPAPRSNFLTAWIAQPDVVAL 169          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A158EYG7_9BURK (N-acetyltransferase GCN5 n=1 Tax=Caballeronia telluris TaxID=326475 RepID=A0A158EYG7_9BURK)

HSP 1 Score: 99.8 bits (247), Expect = 2.410e-22
Identity = 69/166 (41.57%), Postives = 83/166 (50.00%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGG-VVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A  EGWN    DA  F+AADP GFFI +  D EPVA +S V +G    FIGLYI AP FRGRG GL  +   +  LG   +G D V  Q      S  R +  + RF+G+ A DG P     VE       S+       +DR    APR  F+  WLA P   AL
Sbjct:   28 AAVEGWNPGLNDALAFRAADPHGFFIGEL-DGEPVACLSAVAYGDTLGFIGLYIVAPAFRGRGFGLRLWNAGIARLGERTIGLDGVVSQQANYRRSGFRLAYRNVRFEGL-ARDGAPTPAGIVEASAVPFESIAA-----YDRRMFSAPREAFLRAWLAQPEGAAL 186          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A1H2SSW3_THIRO (N-acetyltransferase domain-containing protein n=4 Tax=Thiocapsa TaxID=1056 RepID=A0A1H2SSW3_THIRO)

HSP 1 Score: 99.8 bits (247), Expect = 2.810e-22
Identity = 68/163 (41.72%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGG-VVGQDAVAQ-QHGRTTPSLVRSSRPHRRFQGVVAIDGP--PFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLAN 477
            A  EGWN   +DA  F+AADPEGF ++   D EP AS+S VR+G    FIGLYI AP +RGRG  L  ++  M  LG  V+G D V + QH         + R + R+ G V +  P  P L  PV+ G       L   +LD+DR   PAPR +F+  WL  
Sbjct:   28 AAREGWNPGLDDAACFRAADPEGFLMAFV-DGEPAASLSAVRYGETFGFIGLYIAAPPYRGRGIALRLWQAGMAFLGDRVIGLDGVPERQHDYRRSGFALAWR-NVRYSGTVTLAAPDDPRLV-PVDPG-------LLPALLDYDRPFFPAPRDRFLDAWLTQ 180          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A516H3N8_9PROT (GNAT family N-acetyltransferase n=1 Tax=Ferrovibrio terrae TaxID=2594003 RepID=A0A516H3N8_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 1.130e-21
Identity = 61/166 (36.75%), Postives = 82/166 (49.40%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMD-LLGGVVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A +EGWN   +DA  F AADP+GF +  +   EPVA +S VR+G    F+G YI AP +RG+G G A +   +  L G  VG D V  Q      S  + +  + R+ G      P         G    R +    +L++DR   PAPR  F+  WL  PGH AL
Sbjct:   22 AAAEGWNPGLQDAGLFHAADPQGFLVGLQG-GEPVACISVVRYGHRYGFLGFYIVAPGWRGKGRGFAVWEAGLQHLRGRTVGLDGVLAQQDNYRKSGFKLAHRNIRYGGAADFGAPAA-------GLVDAREIAFDRLLEYDRRFFPAPRDGFVSGWLTAPGHRAL 179          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: UPI0016594960 (GNAT family N-acetyltransferase n=2 Tax=Roseomonas TaxID=125216 RepID=UPI0016594960)

HSP 1 Score: 96.7 bits (239), Expect = 3.090e-21
Identity = 63/171 (36.84%), Postives = 85/171 (49.71%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGG-VVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPVEEGGHRRR-----SLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A  EGWN    D   F AADPEGF +++     P A +S VR G    FIG YI  P+ RG+G G+A +R AM+ L G VVG D V  +      S  R++  + R+             RP   GG + +     SL  + +   D   +PAPR  F+ +WL+ PGH AL
Sbjct:   20 AAQEGWNPGLADTAAFLAADPEGFLLAEDTHGRPAACISAVRQGKGFGFIGFYIVRPDLRGQGLGMALWRHAMERLAGRVVGLDGVVARQADYACSGFRTAWRNVRYAA-----------RPQAVGGGQGQVVPAASLPFEALSALDASVLPAPREDFLRVWLSTPGHRAL 179          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A6N6P443_9BACT (GNAT family N-acetyltransferase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A6N6P443_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 4.790e-21
Identity = 65/166 (39.16%), Postives = 83/166 (50.00%), Query Frame = 1
Query:    7 SEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGGV--VGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGP-PFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            SEGWN    DA  F   DP+GFFI  R D +PVA++S VR+G D  FIG YI APEFR  G+G      A   L G   VG D V  Q         R +  + RF+G     GP   +  P         +L  + +LD+DR H PA R+ F+  W+  P  +AL
Sbjct:   23 SEGWNPGLHDAPIFYQTDPKGFFIG-RIDGKPVATISAVRYGSDFGFIGFYIVAPEFRDHGYGGHLILHASQHLAGCRSVGLDGVESQQSNYARHGARYAHDNIRFEG----HGPGEKIHLPSRSEICSLIALPIETILDYDRRHFPADRSNFLEPWIHQPEALAL 183          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: UPI001E3291A1 (GNAT family N-acetyltransferase n=1 Tax=Microbulbifer celer TaxID=435905 RepID=UPI001E3291A1)

HSP 1 Score: 96.3 bits (238), Expect = 4.880e-21
Identity = 62/174 (35.63%), Postives = 88/174 (50.57%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLL-GGVVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVV--------AIDGPPFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL 495
            A +EGWN  R DA  F   DP+GF +     D+P+A +S V++  D  F+G YI APE+RGRG+GL  ++ AM  + GG +G D V +Q      S    +  + R++G          +I G      P+   GH         + D+DR   PA R  F+  W+A PG VAL
Sbjct:   19 AANEGWNPGRGDAESFYVTDPKGFMVGCLG-DKPIACISAVKYPPDFGFLGFYIVAPEYRGRGYGLQLWQAAMARVQGGNIGLDGVVEQQANYRKSGFHLAWRNVRYRGAGPQSRVDSGSISGKLVTLSPL--AGHTLTE-----IADYDRQLFPARREAFLKSWVAQPGAVAL 184          
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Match: A0A495VE79_9GAMM (Ribosomal protein S18 acetylase RimI-like enzyme n=1 Tax=Thiocapsa rosea TaxID=69360 RepID=A0A495VE79_9GAMM)

HSP 1 Score: 95.1 bits (235), Expect = 1.450e-20
Identity = 64/162 (39.51%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    1 AKSEGWNTQREDATPFQAADPEGFFISKRRDDEPVASVSTVRHGIDCSFIGLYI*APEFRGRGHGLAAFRRAMDLLGG-VVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGP--PFLTRPVEEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLAN 477
            A  EGWN   EDA  F+A D EGF ++   D EP AS+S VR+G    FIGLYI AP FRGRG  L  ++  M  LG  V+G D V ++      S    +  + R+ G +A+  P  P L  P E         +  ++LD+DR   PAPR +F+  WL  
Sbjct:   23 AAREGWNPGLEDAACFRATDSEGFLMAFA-DGEPAASLSVVRYGETFGFIGLYIAAPPFRGRGIALRLWQAGMAFLGDRVIGLDGVPERQHDYRRSGFELAWRNVRYSGSLALTAPDDPRLV-PFEPD-------MLPVLLDYDRPFFPAPRARFLEPWLTR 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12744.5524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1L6I941_9BURK2.530e-2640.36GNAT family N-acetyltransferase n=2 Tax=Paraburkho... [more]
A0A225MJX0_9BURK2.370e-2340.72GNAT family N-acetyltransferase n=1 Tax=Candidimon... [more]
A0A5B0H3W0_9BURK6.440e-2337.95GNAT family N-acetyltransferase n=1 Tax=Paraburkho... [more]
A0A158EYG7_9BURK2.410e-2241.57N-acetyltransferase GCN5 n=1 Tax=Caballeronia tell... [more]
A0A1H2SSW3_THIRO2.810e-2241.72N-acetyltransferase domain-containing protein n=4 ... [more]
A0A516H3N8_9PROT1.130e-2136.75GNAT family N-acetyltransferase n=1 Tax=Ferrovibri... [more]
UPI00165949603.090e-2136.84GNAT family N-acetyltransferase n=2 Tax=Roseomonas... [more]
A0A6N6P443_9BACT4.790e-2139.16GNAT family N-acetyltransferase n=1 Tax=Verrucomic... [more]
UPI001E3291A14.880e-2135.63GNAT family N-acetyltransferase n=1 Tax=Microbulbi... [more]
A0A495VE79_9GAMM1.450e-2039.51Ribosomal protein S18 acetylase RimI-like enzyme n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12744contigM-pyrifera_M_contig12744:8446..8960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12744.5524.1prot_M-pyrifera_M_contig12744.5524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12744 8446..8744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.5736825-CDS-M-pyrifera_M_contig12744:8445..85371622815788.5736825-CDS-M-pyrifera_M_contig12744:8445..8537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12744 8446..8537 -
1692277570.0400276-CDS-M-pyrifera_M_contig12744:8445..85371692277570.0400276-CDS-M-pyrifera_M_contig12744:8445..8537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12744 8446..8537 -
1622815788.5842502-CDS-M-pyrifera_M_contig12744:8557..87441622815788.5842502-CDS-M-pyrifera_M_contig12744:8557..8744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12744 8558..8744 -
1692277570.0499606-CDS-M-pyrifera_M_contig12744:8557..87441692277570.0499606-CDS-M-pyrifera_M_contig12744:8557..8744Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12744 8558..8744 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815788.593743-UTR-M-pyrifera_M_contig12744:8744..89601622815788.593743-UTR-M-pyrifera_M_contig12744:8744..8960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12744 8745..8960 -
1692277570.0610173-UTR-M-pyrifera_M_contig12744:8744..89601692277570.0610173-UTR-M-pyrifera_M_contig12744:8744..8960Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12744 8745..8960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12744.5524.1

>prot_M-pyrifera_M_contig12744.5524.1 ID=prot_M-pyrifera_M_contig12744.5524.1|Name=mRNA_M-pyrifera_M_contig12744.5524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MDLLGGVVGQDAVAQQHGRTTPSLVRSSRPHRRFQGVVAIDGPPFLTRPV
EEGGHRRRSLLRKLVLDFDRGHVPAPRTQFIVMWLANPGHVAL
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mRNA from alignment at M-pyrifera_M_contig12744:8446..8960-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12744.5524.1 ID=mRNA_M-pyrifera_M_contig12744.5524.1|Name=mRNA_M-pyrifera_M_contig12744.5524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=515bp|location=Sequence derived from alignment at M-pyrifera_M_contig12744:8446..8960- (Macrocystis pyrifera P11B4 male)
GCGAAGTCAGAGGGATGGAACACCCAAAGGGAAGACGCGACTCCTTTCCA AGCAGCAGATCCAGAGGGCTTCTTCATATCCAAGAGAAGGGACGATGAGC CGGTGGCGTCAGTCTCGACCGTGAGACACGGGATAGACTGCAGCTTCATC GGGCTCTACATTTGAGCTCCAGAGTTCCGCGGCAGAGGTCACGGCTTGGC TGCGTTCCGCCGCGCGATGGACCTCTTGGGAGGGGTCGTTGGACAGGATG CTGTCGCGCAACAACACGGGCGAACTACGCCAAGCTTGGTTCGAAGTAGC AGACCACATCGTAGATTCCAGGGCGTAGTTGCGATTGATGGTCCACCATT CTTGACGCGGCCAGTGGAGGAAGGTGGTCATAGGAGGCGGTCGTTGTTGA GAAGTTAGGGCAGAACAATACAGAGCTCGTGCTTGACTTCGACCGTGGCC ACGTCCCTGCCCCGCGTACGCAATTCATTGTTATGTGGCTCGCCAACCCA GGACACGTGGCTCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12744:8446..8960-

>mRNA_M-pyrifera_M_contig12744.5524.1 ID=mRNA_M-pyrifera_M_contig12744.5524.1|Name=mRNA_M-pyrifera_M_contig12744.5524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig12744:8446..8960- (Macrocystis pyrifera P11B4 male)
ATGGACCTCTTGGGAGGGGTCGTTGGACAGGATGCTGTCGCGCAACAACA
CGGGCGAACTACGCCAAGCTTGGTTCGAAGTAGCAGACCACATCGTAGAT
TCCAGGGCGTAGTTGCGATTGATGGTCCACCATTCTTGACGCGGCCAGTG
GAGGAAGGTGGTCATAGGAGGCGGTCGTTGTTGAGAAATGGACCTCTTGG
GAGGGGTCGTTGGACAGGATGCTGTCGCGCAACAACACGGGCGAACTACG
CCAAGCTTGGTTCGAAGTAGCAGACCACATCGTAGATTCCAGGGCGTAGT
TGCGATTGATGGTCCACCATTCTTGACGCGGCCAGTGGAGGAAGGTGGTC
ATAGGAGGCGGTCGTTGTTGAGAAAGCTCGTGCTTGACTTCGACCGTGGC
CACGTCCCTGCCCCGCGTACGCAATTCATTGTTATGTGGCTCGCCAACCC
AGGACACGTGGCTCTAAGCTCGTGCTTGACTTCGACCGTGGCCACGTCCC
TGCCCCGCGTACGCAATTCATTGTTATGTGGCTCGCCAACCCAGGACACG
TGGCTCTA
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