mRNA_M-pyrifera_M_contig127321.5501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127321.5501.1
Unique NamemRNA_M-pyrifera_M_contig127321.5501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig127321.5501.1 vs. uniprot
Match: A0A7C6DN56_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C6DN56_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 7.970e-9
Identity = 53/154 (34.42%), Postives = 78/154 (50.65%), Query Frame = 1 
Query:    4 ERPLPVVWFVLAAVAL----AWGYRGLADSWFLRDDFMWLFDSRIQLQDPIQFLTTRPSGYFRPFANLVFGLEHAFFGLEPAGFYAVNVLIHGWSAFWLAKLVRSFGGSVGFAG--ASALSVCALTAAAPGVVWISGLVSLLAVAMVLPALYFY 447
             RP P  W + A  AL     +G R  A++++L DD+ W+ ++ +  ++PI  L    +G+FRP  NLVF   +   GL+PAG+Y VN+ +H  +A  +A L     G  G A   A  L   A+      V+WI G   L+A A  L  L  Y
Sbjct:    5 HRPKPRRWALAAPAALYAVLVFG-RATANTFWL-DDYGWVRNAILASREPIALLALE-AGFFRPVVNLVFLANYLLSGLDPAGYYWVNIALHVINASLVATLAYRLSGHNGIAAGVAGLLFAGAVGNYGEAVIWICGRTELVATAFGLSTLLLY 155
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127321.5501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C6DN56_9CHLR7.970e-934.42Uncharacterized protein (Fragment) n=1 Tax=Chlorof... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127321contigM-pyrifera_M_contig127321:4..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815787.3074183-CDS-M-pyrifera_M_contig127321:3..4531622815787.3074183-CDS-M-pyrifera_M_contig127321:3..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127321 4..453 -
1692277569.3823826-CDS-M-pyrifera_M_contig127321:3..4531692277569.3823826-CDS-M-pyrifera_M_contig127321:3..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127321 4..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127321.5501.1prot_M-pyrifera_M_contig127321.5501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127321 4..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127321.5501.1

>prot_M-pyrifera_M_contig127321.5501.1 ID=prot_M-pyrifera_M_contig127321.5501.1|Name=mRNA_M-pyrifera_M_contig127321.5501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
MERPLPVVWFVLAAVALAWGYRGLADSWFLRDDFMWLFDSRIQLQDPIQF
LTTRPSGYFRPFANLVFGLEHAFFGLEPAGFYAVNVLIHGWSAFWLAKLV
RSFGGSVGFAGASALSVCALTAAAPGVVWISGLVSLLAVAMVLPALYFYH
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mRNA from alignment at M-pyrifera_M_contig127321:4..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127321.5501.1 ID=mRNA_M-pyrifera_M_contig127321.5501.1|Name=mRNA_M-pyrifera_M_contig127321.5501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig127321:4..453- (Macrocystis pyrifera P11B4 male)
ATGGAGCGCCCGCTCCCGGTCGTCTGGTTCGTGCTCGCGGCGGTCGCGCT
CGCGTGGGGGTATCGCGGCCTCGCGGACAGCTGGTTCCTGCGTGACGACT
TCATGTGGCTGTTCGACAGCCGCATCCAACTGCAGGACCCGATCCAGTTC
CTGACGACGCGGCCGAGTGGCTACTTCCGGCCGTTCGCGAACCTGGTCTT
CGGCCTCGAGCACGCGTTCTTCGGGCTCGAGCCGGCCGGCTTCTACGCGG
TCAACGTGCTGATCCACGGATGGAGCGCGTTCTGGCTCGCCAAGCTGGTG
CGCTCGTTCGGCGGCAGCGTCGGCTTTGCCGGCGCGAGCGCGCTCAGCGT
GTGCGCGCTGACCGCGGCGGCGCCCGGCGTCGTGTGGATCTCGGGGCTCG
TCTCGCTGCTCGCCGTCGCGATGGTGTTGCCGGCGCTGTACTTCTACCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127321:4..453-

>mRNA_M-pyrifera_M_contig127321.5501.1 ID=mRNA_M-pyrifera_M_contig127321.5501.1|Name=mRNA_M-pyrifera_M_contig127321.5501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig127321:4..453- (Macrocystis pyrifera P11B4 male)
ATGGAGCGCCCGCTCCCGGTCGTCTGGTTCGTGCTCGCGGCGGTCGCGCT
CGCGTGGGGGTATCGCGGCCTCGCGGACAGCTGGTTCCTGCGTGACGACT
TCATGTGGCTGTTCGACAGCCGCATCCAACTGCAGGACCCGATCCAGTTC
CTGACGACGCGGCCGAGTGGCTACTTCCGGCCGTTCGCGAACCTGGTCTT
CGGCCTCGAGCACGCGTTCTTCGGGCTCGAGCCGGCCGGCTTCTACGCGG
TCAACGTGCTGATCCACGGATGGAGCGCGTTCTGGCTCGCCAAGCTGGTG
CGCTCGTTCGGCGGCAGCGTCGGCTTTGCCGGCGCGAGCGCGCTCAGCGT
GTGCGCGCTGACCGCGGCGGCGCCCGGCGTCGTGTGGATCTCGGGGCTCG
TCTCGCTGCTCGCCGTCGCGATGGTGTTGCCGGCGCTGTACTTCTACCAC
ATGGAGCGCCCGCTCCCGGTCGTCTGGTTCGTGCTCGCGGCGGTCGCGCT
CGCGTGGGGGTATCGCGGCCTCGCGGACAGCTGGTTCCTGCGTGACGACT
TCATGTGGCTGTTCGACAGCCGCATCCAACTGCAGGACCCGATCCAGTTC
CTGACGACGCGGCCGAGTGGCTACTTCCGGCCGTTCGCGAACCTGGTCTT
CGGCCTCGAGCACGCGTTCTTCGGGCTCGAGCCGGCCGGCTTCTACGCGG
TCAACGTGCTGATCCACGGATGGAGCGCGTTCTGGCTCGCCAAGCTGGTG
CGCTCGTTCGGCGGCAGCGTCGGCTTTGCCGGCGCGAGCGCGCTCAGCGT
GTGCGCGCTGACCGCGGCGGCGCCCGGCGTCGTGTGGATCTCGGGGCTCG
TCTCGCTGCTCGCCGTCGCGATGGTGTTGCCGGCGCTGTACTTCTACCAC
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