mRNA_M-pyrifera_M_contig127170.5478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127170.5478.1
Unique NamemRNA_M-pyrifera_M_contig127170.5478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A2S6QU93_9PROT (Anthranilate 1,2-dioxygenase large subunit n=1 Tax=Alphaproteobacteria bacterium MarineAlpha9_Bin7 TaxID=2013102 RepID=A0A2S6QU93_9PROT)

HSP 1 Score: 164 bits (416), Expect = 3.770e-46
Identity = 73/167 (43.71%), Postives = 113/167 (67.66%), Query Frame = 1
Query:   10 VDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHI---GSEVADEAIKLDADTLY 501
            +D++ LLGDL  EL++W   R  ++G ++++  LNWK+ANDTFGE YHFH LH+D +  +F+GDA +Y  + RNHR    +R +D +REQP ++W  T   +V+Y+LFPNV +AL    ++LFRIYP+ +  GRS+T+ISHY +  +    ++  D+  KL  + +Y
Sbjct:  170 LDVEMLLGDLASELENWKFERMNYVGETTIDMRLNWKLANDTFGETYHFHKLHKDTVGKIFYGDALSYESFQRNHRFVFPNRGIDRVREQPRDEWRVTHGAVVIYYLFPNVHVALGRGNINLFRIYPHPKNPGRSITQISHYFSDKLLEAKNQEGDDVPKLSPENVY 336          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A1Z9TIA1_9PROT (Rieske domain-containing protein n=1 Tax=Proteobacteria bacterium TMED261 TaxID=1986846 RepID=A0A1Z9TIA1_9PROT)

HSP 1 Score: 159 bits (401), Expect = 5.980e-44
Identity = 69/146 (47.26%), Postives = 107/146 (73.29%), Query Frame = 1
Query:    1 DGVVDIDALLGD-LGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHY 435
            DG +++DALLGD L  E+ S+DLG   ++ G +++KNLNWK+ANDTFGE YHF  LH+D +N+++ G+   + E+GRNHR   A+R +D +R+ PE  WN T    V+Y+LFPN+QI + N+++++ RIYP+ +  GRS++++S Y
Sbjct:  167 DGKIELDALLGDELSTEIGSFDLGNYHYVTGKTIDKNLNWKLANDTFGETYHFGKLHKDTINSIYQGNNLHFEEFGRNHRFVTANRGIDEMRQLPEADWNITXGAFVLYYLFPNIQIVVENQIITMIRIYPDTRNPGRSISKVSLY 312          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A2E8NMH0_9GAMM (Rieske domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8NMH0_9GAMM)

HSP 1 Score: 158 bits (400), Expect = 7.910e-44
Identity = 73/167 (43.71%), Postives = 109/167 (65.27%), Query Frame = 1
Query:    1 DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHIGSEVADEAIKLDADTLY 501
            DG +++D LLG+LGPELDS+ +    + G S+++K LNWK ANDTFGE YHF  LH+D L  +F+G+   ++E+GR+HR   ASR +D LR+ PE +W  +    V+YHLFPN+Q+ +     +L RIYP+ +   RS+T+IS Y +Q      A++ +  D   +Y
Sbjct:  167 DGEINLDKLLGELGPELDSFGMQNHLYQGSSTIDKRLNWKFANDTFGETYHFAKLHKDTLGRIFYGNNLHFKEFGRHHRFVTASRGIDQLRQMPESEWEISHGTFVLYHLFPNIQLVVGPHTTTLIRIYPHEEGPSRSVTKISFYYSQAAMDYAAEQNVNSDEIDVY 333          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A7C7J5B2_9PROT (Aromatic ring-hydroxylating dioxygenase subunit alpha n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C7J5B2_9PROT)

HSP 1 Score: 158 bits (400), Expect = 8.750e-44
Identity = 73/167 (43.71%), Postives = 106/167 (63.47%), Query Frame = 1
Query:   10 VDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHIGS---EVADEAIKLDADTLY 501
            +++D LLG+L PEL +W   R   +G +S++  LNWK+ANDTFGE YHFH LH+D +  +F+GDA +Y  + RNHR    +  +D LRE+P E W  T   +V+Y+LFPN+Q+ L    ++L RIYP++    RS+T+ISHY +  +     E  D A KL    +Y
Sbjct:  170 LNVDTLLGELAPELANWKFERMNRVGETSIDMQLNWKLANDTFGETYHFHKLHKDTVGRIFYGDALSYESFERNHRFVFPNLAIDRLREKPREDWRVTHGAVVIYYLFPNIQLVLGRGTINLIRIYPDQNNPSRSITQISHYFSDRLLEAKVEAGDNAPKLTPKNVY 336          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A6N9BXZ2_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N9BXZ2_9GAMM)

HSP 1 Score: 157 bits (398), Expect = 1.760e-43
Identity = 74/145 (51.03%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHY 435
            DG +D+ ALLGDL  EL +W+ G   +LG + +E NLNWK+ANDTFGE YHF  LH++ L  LF+GDA AY  +GRNHR    +R +D LR+ PE +W+  DA  V+Y+LFPNVQ  +    + + RIYP +   GRSLTR+ +Y
Sbjct:  167 DGELDVPALLGDLDAELANWNAGNYVYLGETVIEGNLNWKLANDTFGETYHFQRLHKETLGQLFYGDALAYETFGRNHRFVFPARNIDELRDLPESEWSTDDAANVLYYLFPNVQFNVGRDQILVIRIYPEKGNPGRSLTRLGYY 311          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A424LVJ2_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Gammaproteobacteria bacterium TMED92 TaxID=1986770 RepID=A0A424LVJ2_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 1.110e-42
Identity = 76/165 (46.06%), Postives = 107/165 (64.85%), Query Frame = 1
Query:    1 DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHIGSEVADEAIKLDADT 495
            DG ++   LLGDLGPE+DSW+     + G + L  +LNWK+ANDTFGE YHF  LH+D L  LFHGDA AY+E+GRNHR   A++ +D L++ PEE+W+ + +   +Y+LFPN+Q+       +L +IYP+    GRS+TR+ HY      +E+   A   DA T
Sbjct:  167 DGELNSAELLGDLGPEIDSWNFDSLVYTGETVLRNDLNWKLANDTFGETYHFGRLHKDTLGKLFHGDALAYQEFGRNHRFVWATKNIDALQDLPEEEWDYSQSTGWIYYLFPNIQLTGGASDANLIKIYPDADNPGRSITRVHHY----FSAEIMATAAAQDATT 327          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A2D7I1M8_9DELT (Rieske domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2D7I1M8_9DELT)

HSP 1 Score: 152 bits (384), Expect = 2.160e-41
Identity = 74/169 (43.79%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    1 DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQ---EVGRSLTRISHYEAQHIGSEVADEAIKLDADTL 498
            DG +D+D  LG LG E+ SW  G    +G + +E  LNWK+ANDTFGE YHF  LH++ L  +FHGDA  Y E+GRNHR  +A++ +D LR +P ++W+  +    +Y+LFPN+Q++     VSL ++YP+ +   +  RSLTR+ HY +Q    E+ D+A +  AD L
Sbjct:  166 DGHIDLDQQLGGLGAEIASWGFGELVHMGDTVIEGRLNWKLANDTFGETYHFSRLHKNTLGQVFHGDALGYEEFGRNHRFVIATKAIDALRARPRDEWSLLETTSPLYYLFPNIQLSFGKGSVSLIKMYPHPEHPDDPSRSLTRVVHYFSQ----ELIDQAEQAGADEL 330          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A2D5APP8_9BACT (Rieske domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5APP8_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.320e-41
Identity = 72/147 (48.98%), Postives = 98/147 (66.67%), Query Frame = 1
Query:    4 GVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQ 444
            G VDID LLGDL PE+  W+  +  +   S L+  LNWK+ANDTFGE YHF  LH+D L +LFHGDA AY EYGRNHR   A++ ++ L+  PEE W   +    +Y+LFPNVQ+       +L +IYP+ +  GRS+T+++HY +Q
Sbjct:  168 GNVDIDDLLGDLAPEIAGWNFDKLTYHTESVLDNQLNWKLANDTFGETYHFSRLHKDTLGHLFHGDALAYEEYGRNHRFVFATKNIENLKGIPEEDWQYGENASWLYYLFPNVQLGGGGHDANLIKIYPDPKNPGRSITKVNHYFSQ 314          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A7Y3CXY4_9GAMM (Aromatic ring-hydroxylating dioxygenase subunit alpha n=1 Tax=Pseudomonadales bacterium TaxID=1891229 RepID=A0A7Y3CXY4_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 1.560e-40
Identity = 66/142 (46.48%), Postives = 98/142 (69.01%), Query Frame = 1
Query:   10 VDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHY 435
            +D+D LLG+L  EL S +L R  + GG  ++  LNWK+ANDTFGE YHF  LH+D L  +F+G+  +Y E+GR+HR   AS+ +D +R++PE +W+ TD   ++Y+LFPN+Q+ +    V+L RIYP+ +  G S+TRI  Y
Sbjct:  170 LDLDELLGELSDELASLNLARHSYAGGRDIDMPLNWKLANDTFGETYHFQKLHKDTLGQIFYGNNLSYEEFGRHHRFVTASKNIDAMRDKPESEWHLTDGAFIIYYLFPNIQLLINFGRVTLVRIYPDERNAGHSVTRIRSY 311          
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Match: A0A354VZT5_9GAMM (Rieske domain-containing protein n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A354VZT5_9GAMM)

HSP 1 Score: 148 bits (373), Expect = 7.730e-40
Identity = 77/162 (47.53%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    1 DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENYHFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNATDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHIGSEVADEAIKLD 486
            DG +D  ALLG+LG E+  W+     ++G S LE  LNWK+ANDTFGE YHF  LH+D L  LF GDA  Y E+GRNHR   A+  +D L+  PE+ W+   A   +Y+LFPN+Q+       SL +IYP+    GR  TR+SHY +Q    E+ DEA K D
Sbjct:  167 DGHLDPVALLGELGDEIAGWNFDSLVYVGESLLENKLNWKLANDTFGETYHFGRLHKDTLGKLFQGDALHYEEFGRNHRFVWANHGIDQLKSLPEDDWHYEAATGWIYYLFPNIQLTGGGHTSSLIKIYPDATNPGRCRTRVSHYFSQ----EIIDEASKSD 324          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127170.5478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S6QU93_9PROT3.770e-4643.71Anthranilate 1,2-dioxygenase large subunit n=1 Tax... [more]
A0A1Z9TIA1_9PROT5.980e-4447.26Rieske domain-containing protein n=1 Tax=Proteobac... [more]
A0A2E8NMH0_9GAMM7.910e-4443.71Rieske domain-containing protein n=1 Tax=Gammaprot... [more]
A0A7C7J5B2_9PROT8.750e-4443.71Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A6N9BXZ2_9GAMM1.760e-4351.03Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A424LVJ2_9GAMM1.110e-4246.06Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A2D7I1M8_9DELT2.160e-4143.79Rieske domain-containing protein n=2 Tax=Bacteria ... [more]
A0A2D5APP8_9BACT2.320e-4148.98Rieske domain-containing protein n=1 Tax=Verrucomi... [more]
A0A7Y3CXY4_9GAMM1.560e-4046.48Aromatic ring-hydroxylating dioxygenase subunit al... [more]
A0A354VZT5_9GAMM7.730e-4047.53Rieske domain-containing protein n=4 Tax=Gammaprot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127170contigM-pyrifera_M_contig127170:3..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.5
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog1282876.BAOK01000001_gene1319
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
EggNOG OGs1RBGZ@1224,2U82S@28211,COG4638@1,COG4638@2
COG Functional cat.P
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.815444-CDS-M-pyrifera_M_contig127170:2..5031622815785.815444-CDS-M-pyrifera_M_contig127170:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127170 3..503 +
1692277568.5765917-CDS-M-pyrifera_M_contig127170:2..5031692277568.5765917-CDS-M-pyrifera_M_contig127170:2..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127170 3..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127170.5478.1prot_M-pyrifera_M_contig127170.5478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127170 3..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127170.5478.1

>prot_M-pyrifera_M_contig127170.5478.1 ID=prot_M-pyrifera_M_contig127170.5478.1|Name=mRNA_M-pyrifera_M_contig127170.5478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
DGVVDIDALLGDLGPELDSWDLGRARFLGGSSLEKNLNWKIANDTFGENY
HFHTLHRDKLNNLFHGDATAYREYGRNHRLAVASRYLDVLREQPEEKWNA
TDAGIVVYHLFPNVQIALFNRVVSLFRIYPNRQEVGRSLTRISHYEAQHI
GSEVADEAIKLDADTLY
back to top

mRNA from alignment at M-pyrifera_M_contig127170:3..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127170.5478.1 ID=mRNA_M-pyrifera_M_contig127170.5478.1|Name=mRNA_M-pyrifera_M_contig127170.5478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig127170:3..503+ (Macrocystis pyrifera P11B4 male)
GATGGCGTTGTCGACATCGACGCATTGCTCGGCGATCTCGGCCCGGAACT TGATTCATGGGATCTCGGCCGCGCGAGATTTCTCGGCGGATCGTCGCTCG AAAAGAATCTGAACTGGAAGATCGCGAACGACACGTTCGGTGAAAATTAT CACTTTCATACGCTGCACCGGGACAAACTGAATAACCTGTTTCACGGCGA CGCCACCGCCTACAGGGAATACGGGCGCAATCACCGCCTCGCCGTGGCTA GCCGTTATCTCGACGTTCTGCGCGAGCAACCGGAGGAGAAATGGAATGCA ACGGACGCGGGGATCGTGGTTTATCACCTGTTCCCGAATGTCCAGATCGC GTTGTTCAACCGGGTTGTCAGCCTGTTCCGGATTTATCCGAACCGGCAGG AAGTAGGCCGTTCACTGACCCGAATCTCCCACTACGAAGCGCAGCACATC GGGTCGGAGGTGGCGGACGAAGCGATCAAGCTGGATGCCGACACGCTGTA T
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig127170:3..503+

>mRNA_M-pyrifera_M_contig127170.5478.1 ID=mRNA_M-pyrifera_M_contig127170.5478.1|Name=mRNA_M-pyrifera_M_contig127170.5478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig127170:3..503+ (Macrocystis pyrifera P11B4 male)
GATGGCGTTGTCGACATCGACGCATTGCTCGGCGATCTCGGCCCGGAACT
TGATTCATGGGATCTCGGCCGCGCGAGATTTCTCGGCGGATCGTCGCTCG
AAAAGAATCTGAACTGGAAGATCGCGAACGACACGTTCGGTGAAAATTAT
CACTTTCATACGCTGCACCGGGACAAACTGAATAACCTGTTTCACGGCGA
CGCCACCGCCTACAGGGAATACGGGCGCAATCACCGCCTCGCCGTGGCTA
GCCGTTATCTCGACGTTCTGCGCGAGCAACCGGAGGAGAAATGGAATGCA
ACGGACGCGGGGATCGTGGTTTATCACCTGTTCCCGAATGTCCAGATCGC
GTTGTTCAACCGGGTTGTCAGCCTGTTCCGGATTTATCCGAACCGGCAGG
AAGTAGGCCGTTCACTGACCCGAATCTCCCACTACGAAGCGCAGCACATC
GGGTCGGAGGTGGCGGACGAAGCGATCAAGCTGGATGCCGACACGCTGTA
TGATGGCGTTGTCGACATCGACGCATTGCTCGGCGATCTCGGCCCGGAAC
TTGATTCATGGGATCTCGGCCGCGCGAGATTTCTCGGCGGATCGTCGCTC
GAAAAGAATCTGAACTGGAAGATCGCGAACGACACGTTCGGTGAAAATTA
TCACTTTCATACGCTGCACCGGGACAAACTGAATAACCTGTTTCACGGCG
ACGCCACCGCCTACAGGGAATACGGGCGCAATCACCGCCTCGCCGTGGCT
AGCCGTTATCTCGACGTTCTGCGCGAGCAACCGGAGGAGAAATGGAATGC
AACGGACGCGGGGATCGTGGTTTATCACCTGTTCCCGAATGTCCAGATCG
CGTTGTTCAACCGGGTTGTCAGCCTGTTCCGGATTTATCCGAACCGGCAG
GAAGTAGGCCGTTCACTGACCCGAATCTCCCACTACGAAGCGCAGCACAT
CGGGTCGGAGGTGGCGGACGAAGCGATCAAGCTGGATGCCGACACGCTGT
AT
back to top