mRNA_M-pyrifera_M_contig127163.5476.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig127163.5476.1
Unique NamemRNA_M-pyrifera_M_contig127163.5476.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A7C2WCV6_9BACT (DUF4838 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C2WCV6_9BACT)

HSP 1 Score: 125 bits (314), Expect = 2.310e-30
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   73 QFEAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            +FE +PA T      G+ YRY  G +  + DF        GI+  IT++V   E+ +AL F G+   P+DG+Y+F   SNDGSRLF+   E++ NDGLH+AETR+G++AL+ GLH + V +FQAG   A  ++ +GP
Sbjct:  591 RFEPRPADTVANTKEGLRYRYFAGEWSMIPDFAALTPLKTGITEKITLEVAPKEESYALEFTGYFLAPKDGIYSFSLTSNDGSRLFLGDAELINNDGLHKAETRSGMIALRAGLHPIAVTFFQAGADQALALHCAGP 727          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A1V5KHC2_9BACT (Stage II sporulation protein P (SpoIIP) n=1 Tax=bacterium ADurb.Bin478 TaxID=1866932 RepID=A0A1V5KHC2_9BACT)

HSP 1 Score: 120 bits (302), Expect = 4.280e-30
Identity = 55/133 (41.35%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   85 QPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            +P+ T   LAPG+ + Y  GSF  VAD +       G+     +  +   + F  V++G++  P DG+YTFY  SNDGS+L+++G E+++NDG H A  ++  +ALKKG + ++VKYFQAG   A  V WSGP
Sbjct:  186 EPSATTSSLAPGVRFAYYEGSFNKVADMERIQPVETGLMMACRLQPRDGVEAFGYVYDGYLLAPADGVYTFYLLSNDGSKLYLNGKELIDNDGPHGAFEKSATLALKKGEYPIQVKYFQAGAGKALRVGWSGP 318          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A661ZZW6_9BACT (Glycoside hydrolase family 92 protein n=2 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A661ZZW6_9BACT)

HSP 1 Score: 122 bits (307), Expect = 2.180e-29
Identity = 56/125 (44.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  109 LAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            + PG+ Y Y  GSF +V DF +      G+   I ++ +  E  FAL FEG+IE+P DG+YTFY  SNDGS++F++G E++ +DGLH A  R   +AL  G HA+E KYFQ G  +  ++ W GP
Sbjct:  856 VGPGLIYNYYTGSFHSVIDFSEMKPIKTGVVSKINLEPRESEQYFALNFEGYIEIPNDGLYTFYLISNDGSKMFLNGMELINSDGLHPALERFTTMALSAGKHAVEFKYFQGGGSNFLKLMWEGP 980          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A1V6EQP3_9BACT (PA14 domain protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin101 TaxID=1852847 RepID=A0A1V6EQP3_9BACT)

HSP 1 Score: 119 bits (298), Expect = 6.440e-29
Identity = 66/159 (41.51%), Postives = 91/159 (57.23%), Query Frame = 1
Query:   22 LAEYKETFSSTLQGDTVQFEAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDE-----FALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            LA YK+T  + ++   +    +P   P   APG+AYRY  G F+ + DF     T  G + ++ +    P  E     +ALV+EG+I +P DG+YTF T SNDGSRL+I    VV+NDGLH   T     ALK+G + L V YFQAG  +A  V ++GP
Sbjct:  251 LANYKQTILAYMEPRQLT-PREPFELPAKAAPGMAYRYYEGQFDVLPDFTTLAPTEEGTAQLMNL---APVQEKNASAYALVYEGYIRIPADGIYTFSTRSNDGSRLYIGDTLVVDNDGLHAETTATSFEALKQGYYPLRVAYFQAGQNAALTVQYAGP 405          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A847GEH9_9BACT (DUF4838 domain-containing protein n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GEH9_9BACT)

HSP 1 Score: 120 bits (300), Expect = 1.830e-28
Identity = 59/154 (38.31%), Postives = 95/154 (61.69%), Query Frame = 1
Query:   22 LAEYKETFSSTLQGDTVQFEAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            LA+YK+     L G+T +F  + A + + + PG+ Y +   + + + DF      AAG++  + +      D FAL FEG+++ P +G+YTF   SNDGSRL++  + +V+NDGLH++ET+ G  AL KG H L V+YF++G     E++W+GP
Sbjct:  607 LADYKKLLLDALTGET-KFTPRKAASVQDVKPGLRYAWYDRTLDLLPDFGALSPDAAGVAERVDLSKSPTMDGFALRFEGYVKAPANGVYTFALRSNDGSRLWMGKDLLVDNDGLHKSETKTGFTALLKGWHPLVVEYFESGGDEDLELFWAGP 759          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A7C1CLH1_9BACT (DUF4838 domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CLH1_9BACT)

HSP 1 Score: 119 bits (299), Expect = 2.490e-28
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   79 EAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMD-VKGPEDE-FALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            EA PA  PE LAPG+ YRY     E + DF+      AG+    +++  K   DE FAL+FEG++ +P DGMY F   SNDGS+LFI    VV NDGLH+ +T  G +AL+KG H++ V YF++G   A  V ++GP
Sbjct:  624 EAPPA--PEKLAPGLTYRYYAEQLERLPDFKTLTPADAGVVDRFSLEPAKDKGDEAFALLFEGYVNIPRDGMYAFSVMSNDGSKLFIGKRRVVNNDGLHKEQTVTGFIALRKGWHSIRVPYFESGGVHALTVSYTGP 758          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A7X8MBE2_9BACT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X8MBE2_9BACT)

HSP 1 Score: 119 bits (298), Expect = 3.620e-28
Identity = 55/133 (41.35%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   85 QPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            +P+     LAPG+ Y Y  GSF  VAD +       G+     +  +   + F  V+ G++  PEDG+Y FY  SNDGS+L+++G E+++NDG H A  ++  +ALKKG + ++VKYFQAG   A  V WSGP
Sbjct: 1104 EPSAATSSLAPGLRYAYYEGSFNKVADMEQKQPVETGLMMGCQLKPREGVEAFGYVYNGYLLTPEDGIYMFYLLSNDGSKLYLNGKELIDNDGPHGAFEKSAALALKKGEYPIQVKYFQAGAGKALRVAWSGP 1236          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A1V5ZAF7_9BACT (PA14 domain protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin179 TaxID=1852849 RepID=A0A1V5ZAF7_9BACT)

HSP 1 Score: 118 bits (295), Expect = 7.070e-28
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   22 LAEYKETFSSTLQGDTVQFEAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDE-----FALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            LA YK+T  + ++   +    +P   P   APG+AYRY  G FE + DF        G +  + +    P  E     +ALV+EG+I +P DG+YTF T SNDGSRL+I    VV+NDGLH   T     ALK+G + L V YFQAG  +A  V+++GP
Sbjct:  448 LANYKQTILAYMEPRQLT-PREPFELPVKAAPGMAYRYYEGQFEGLPDFTALAPAEEGTAQQMNL---APVQEKKASAYALVYEGYIRIPADGIYTFSTRSNDGSRLYIGDTLVVDNDGLHAETTATSFEALKRGYYPLRVAYFQAGQNAALTVHYAGP 602          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A7V3AAU2_9BACT (Glycosyl hydrolase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3AAU2_9BACT)

HSP 1 Score: 118 bits (295), Expect = 7.940e-28
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 1
Query:   79 EAQPAVTPEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPE--DEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            +A+PA  P    PG+  +Y  GS+EA+  F      +  I     +  KG    D FA  + GFIE+P DG+YTF+T S+DGS+LFI G +VV+NDGLH A +++G + L  G HA+EV+YF+A    + EV WSGP
Sbjct:  513 KARPADAPGETKPGLRCQYYEGSWEALPAFDALTPLSTSIVESFVLPEKGKRKPDRFACRYTGFIEIPVDGVYTFHTSSDDGSQLFIGGEKVVDNDGLHGALSKSGPIGLLAGKHAIEVRYFEAWGDESLEVSWSGP 649          
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Match: A0A1W6E3G5_9BACT (Uncharacterized protein n=4 Tax=Fibrella TaxID=861914 RepID=A0A1W6E3G5_9BACT)

HSP 1 Score: 117 bits (293), Expect = 1.720e-27
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  100 PEGLAPGIAYRYIVGSFEAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFYTESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGMRSAFEVYWSGP 483
            P     GI Y Y  GS+  + +F       +G++ V  + V+G +D F L F+GF+ VP DG+YTFYT S+DGS+LFI   EVV NDG H  + R+G + LK G HA+ + YF+ G      V +SGP
Sbjct:  995 PANAVSGIGYTYYEGSWNTLPNFASLTPVRSGLATVPDVSVRGRDDNFGLQFQGFVNVPTDGVYTFYTNSDDGSKLFIGTTEVVNNDGGHPEQERSGTIGLKAGRHAITIPYFEGGGGQTLSVSYSGP 1122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig127163.5476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2WCV6_9BACT2.310e-3043.07DUF4838 domain-containing protein n=1 Tax=Candidat... [more]
A0A1V5KHC2_9BACT4.280e-3041.35Stage II sporulation protein P (SpoIIP) n=1 Tax=ba... [more]
A0A661ZZW6_9BACT2.180e-2944.80Glycoside hydrolase family 92 protein n=2 Tax=Bact... [more]
A0A1V6EQP3_9BACT6.440e-2941.51PA14 domain protein n=1 Tax=Candidatus Hydrogenede... [more]
A0A847GEH9_9BACT1.830e-2838.31DUF4838 domain-containing protein n=1 Tax=Candidat... [more]
A0A7C1CLH1_9BACT2.490e-2845.99DUF4838 domain-containing protein n=1 Tax=Candidat... [more]
A0A7X8MBE2_9BACT3.620e-2841.35PQQ-binding-like beta-propeller repeat protein n=1... [more]
A0A1V5ZAF7_9BACT7.070e-2841.51PA14 domain protein n=1 Tax=Candidatus Hydrogenede... [more]
A0A7V3AAU2_9BACT7.940e-2844.53Glycosyl hydrolase family protein n=1 Tax=Planctom... [more]
A0A1W6E3G5_9BACT1.720e-2742.97Uncharacterized protein n=4 Tax=Fibrella TaxID=861... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig127163contigM-pyrifera_M_contig127163:2..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog504472.Slin_2680
KEGG rclassRC03151,RC03152
KEGG koko:K01179,ko:K08738,ko:K21430
KEGG TC3.D.4.6
KEGG ReactionR06200,R10151,R11307,R11308
KEGG Pathwayko00500,ko00920,ko01100,ko01120,ko01524,ko02020,ko04115,ko04210,ko04214,ko04215,ko04932,ko05010,ko05012,ko05014,ko05016,ko05134,ko05145,ko05152,ko05161,ko05164,ko05167,ko05168,ko05200,ko05210,ko05222,ko05416,map00500,map00920,map01100,map01120,map01524,map02020,map04115,map04210,map04214,map04215,map04932,map05010,map05012,map05014,map05016,map05134,map05145,map05152,map05161,map05164,map05167,map05168,map05200,map05210,map05222,map05416
KEGG ModuleM00595
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Di-glucose binding within endoplasmic reticulum
EggNOG OGs47NUN@768503,4NJDV@976,COG2133@1,COG2133@2,COG3291@1,COG3291@2,COG4625@1,COG4625@2
EC3.2.1.4
COG Functional cat.E
CAZyGH5,GH9
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size483
Cds size483
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815785.7490268-CDS-M-pyrifera_M_contig127163:1..4841622815785.7490268-CDS-M-pyrifera_M_contig127163:1..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127163 2..484 -
1692277568.5507128-CDS-M-pyrifera_M_contig127163:1..4841692277568.5507128-CDS-M-pyrifera_M_contig127163:1..484Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig127163 2..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig127163.5476.1prot_M-pyrifera_M_contig127163.5476.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig127163 2..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig127163.5476.1

>prot_M-pyrifera_M_contig127163.5476.1 ID=prot_M-pyrifera_M_contig127163.5476.1|Name=mRNA_M-pyrifera_M_contig127163.5476.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
MDENQTTLAEYKETFSSTLQGDTVQFEAQPAVTPEGLAPGIAYRYIVGSF
EAVADFQDSPTTAAGISPVITMDVKGPEDEFALVFEGFIEVPEDGMYTFY
TESNDGSRLFIDGNEVVENDGLHRAETRAGIVALKKGLHALEVKYFQAGM
RSAFEVYWSGP
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mRNA from alignment at M-pyrifera_M_contig127163:2..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig127163.5476.1 ID=mRNA_M-pyrifera_M_contig127163.5476.1|Name=mRNA_M-pyrifera_M_contig127163.5476.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig127163:2..484- (Macrocystis pyrifera P11B4 male)
ATGGACGAAAATCAGACGACCCTGGCGGAGTACAAGGAGACCTTCTCCAG TACGTTACAGGGTGACACCGTGCAATTCGAGGCCCAGCCTGCCGTCACGC CGGAGGGGCTGGCACCGGGTATTGCCTACCGCTATATCGTAGGCTCCTTC GAAGCGGTTGCGGACTTCCAGGATAGCCCGACCACGGCGGCGGGTATTTC GCCGGTCATCACGATGGATGTCAAAGGCCCGGAAGATGAGTTTGCCCTGG TCTTTGAAGGCTTTATCGAGGTGCCCGAAGACGGCATGTACACTTTCTAC ACCGAATCCAATGACGGGAGCCGGCTCTTTATCGACGGCAATGAAGTGGT GGAAAACGACGGCCTTCACCGCGCCGAAACCCGCGCGGGCATCGTGGCCC TGAAGAAGGGTCTGCATGCCCTTGAAGTAAAGTATTTTCAGGCGGGTATG CGCTCGGCCTTTGAGGTGTATTGGTCCGGCCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig127163:2..484-

>mRNA_M-pyrifera_M_contig127163.5476.1 ID=mRNA_M-pyrifera_M_contig127163.5476.1|Name=mRNA_M-pyrifera_M_contig127163.5476.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig127163:2..484- (Macrocystis pyrifera P11B4 male)
ATGGACGAAAATCAGACGACCCTGGCGGAGTACAAGGAGACCTTCTCCAG
TACGTTACAGGGTGACACCGTGCAATTCGAGGCCCAGCCTGCCGTCACGC
CGGAGGGGCTGGCACCGGGTATTGCCTACCGCTATATCGTAGGCTCCTTC
GAAGCGGTTGCGGACTTCCAGGATAGCCCGACCACGGCGGCGGGTATTTC
GCCGGTCATCACGATGGATGTCAAAGGCCCGGAAGATGAGTTTGCCCTGG
TCTTTGAAGGCTTTATCGAGGTGCCCGAAGACGGCATGTACACTTTCTAC
ACCGAATCCAATGACGGGAGCCGGCTCTTTATCGACGGCAATGAAGTGGT
GGAAAACGACGGCCTTCACCGCGCCGAAACCCGCGCGGGCATCGTGGCCC
TGAAGAAGGGTCTGCATGCCCTTGAAGTAAAGTATTTTCAGGCGGGTATG
CGCTCGGCCTTTGAGGTGTATTGGTCCGGCCCAATGGACGAAAATCAGAC
GACCCTGGCGGAGTACAAGGAGACCTTCTCCAGTACGTTACAGGGTGACA
CCGTGCAATTCGAGGCCCAGCCTGCCGTCACGCCGGAGGGGCTGGCACCG
GGTATTGCCTACCGCTATATCGTAGGCTCCTTCGAAGCGGTTGCGGACTT
CCAGGATAGCCCGACCACGGCGGCGGGTATTTCGCCGGTCATCACGATGG
ATGTCAAAGGCCCGGAAGATGAGTTTGCCCTGGTCTTTGAAGGCTTTATC
GAGGTGCCCGAAGACGGCATGTACACTTTCTACACCGAATCCAATGACGG
GAGCCGGCTCTTTATCGACGGCAATGAAGTGGTGGAAAACGACGGCCTTC
ACCGCGCCGAAACCCGCGCGGGCATCGTGGCCCTGAAGAAGGGTCTGCAT
GCCCTTGAAGTAAAGTATTTTCAGGCGGGTATGCGCTCGGCCTTTGAGGT
GTATTGGTCCGGCCCA
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