mRNA_M-pyrifera_M_contig1271.5457.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1271.5457.1
Unique NamemRNA_M-pyrifera_M_contig1271.5457.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1271.5457.1 vs. uniprot
Match: D7G1F1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F1_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 1.090e-49
Identity = 85/97 (87.63%), Postives = 92/97 (94.85%), Query Frame = 1 
Query:    1 RGEISAKSDWTVGRLKKELETKFPGKIPASLQRLFKGTMLLPSPMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPSRRDGQVEAFSACLAAQ 291
            RGE++A+SDWTVG+LK+ELE KFPG+IPASLQRLFKGT LLPS MTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVP  +DGQVEAFSACLAAQ
Sbjct:  166 RGEVAARSDWTVGKLKEELEKKFPGRIPASLQRLFKGTQLLPSSMTLEEASEGAEGPLSLLLDNAPPIDASRFDPDTAVPFSKDGQVEAFSACLAAQ 262
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1271.5457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1F1_ECTSI1.090e-4987.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1271contigM-pyrifera_M_contig1271:1762..3779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-07_000800.1
Exons3
Model size292
Cds size291
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1271.5457.1prot_M-pyrifera_M_contig1271.5457.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1271 1763..3779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.785908-CDS-M-pyrifera_M_contig1271:1762..18381622815784.785908-CDS-M-pyrifera_M_contig1271:1762..1838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 1763..1838 -
1692277568.054402-CDS-M-pyrifera_M_contig1271:1762..18381692277568.054402-CDS-M-pyrifera_M_contig1271:1762..1838Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 1763..1838 -
1622815784.80164-CDS-M-pyrifera_M_contig1271:2441..25001622815784.80164-CDS-M-pyrifera_M_contig1271:2441..2500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 2442..2500 -
1692277568.0664632-CDS-M-pyrifera_M_contig1271:2441..25001692277568.0664632-CDS-M-pyrifera_M_contig1271:2441..2500Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 2442..2500 -
1622815784.8157573-CDS-M-pyrifera_M_contig1271:3623..37791622815784.8157573-CDS-M-pyrifera_M_contig1271:3623..3779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 3624..3779 -
1692277568.074665-CDS-M-pyrifera_M_contig1271:3623..37791692277568.074665-CDS-M-pyrifera_M_contig1271:3623..3779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1271 3624..3779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1271.5457.1

>prot_M-pyrifera_M_contig1271.5457.1 ID=prot_M-pyrifera_M_contig1271.5457.1|Name=mRNA_M-pyrifera_M_contig1271.5457.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
RGEISAKSDWTVGRLKKELETKFPGKIPASLQRLFKGTMLLPSPMTLEEA
SEGAEGPLSLLLDNAPPIDASRFDPDTAVPSRRDGQVEAFSACLAAQ
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mRNA from alignment at M-pyrifera_M_contig1271:1762..3779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1271.5457.1 ID=mRNA_M-pyrifera_M_contig1271.5457.1|Name=mRNA_M-pyrifera_M_contig1271.5457.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2018bp|location=Sequence derived from alignment at M-pyrifera_M_contig1271:1762..3779- (Macrocystis pyrifera P11B4 male)
CGGGGCGAGATCTCAGCGAAATCCGACTGGACCGTGGGACGGTTGAAGAA
AGAACTCGAGACGAAATTTCCCGGAAAAATCCCGGCGTCGTTGCAGCGGC
TTTTCAAGGGGACGATGCTTCTCCCCTCTCCGATGACTCTCGAGGAAGCG
TCTGAGGTGAGCAATGCCACGGCAGGAGGCACCCTTGTTTTTTCTCGATT
TTTTTGTAACCTGAGGAGCTTCTCACCTGACCTACTACAACTCTGACCTG
ATCGTATATTAAGGAACGAGCATTCATTGTAAGCCTAAAAGCAGTGCTAC
AGTTTGCTTCGGAGGCGACGGCATGACTCCACCATGGAGAGCCAAAACAC
TGCAAAGAGGTATGGCGCCGGGGTCTAGCTGACCACCTTGCGGCCGTACA
AACGTGAGTTCGACTCCAGCTGCAGGGTACTTTTTTTTTTTTGCCTTTTT
TGTTTGTTTGGGCCATCGGTTGGATGCCTGGGATCAGGGTGGCTGGTGGT
CGTCATATCATTCGGTTTTCACTGTTGTACGTGTTGTTTAGCACCACGTA
AGCGCACGAGACGTCTGATCGGGCGGCGCGGGTGTGTGTGTGTGTGTGTG
TGTGTTTTTTTTTTCTAGAGTGAGATAGTGAGCTCCCTCCTCGTGCGAGG
GACTCAGAAAATAAGGCGCCACCCGCAAGTGGGCATTACTCAAAGGGTTC
GTCAAGTTTTTTTTGGTGTTCGTTTTTGTTTCCAAGCCTCCCCATGCCTC
ATCGCGAAGTGCTGACGGCGACAGACAGGGGGCGCGTTCTCTAAACCGCC
GACGCCTAAAACTGGACTCCAGCACTACGGTAACGTACGGCCACGCCAAC
CCTTGACGTAGCGGTAACTCTAACCCCGACGCGGTAGGGCTATTGATAGT
GTCCTGTCTTTTCTGAAGCTCCTGGCGTGATAAGAGCGTCGGAGTTCCAT
CCCTCCCGAAAAACAAAAAACAACAACTGTGAAAAAAAATATGTAGTTGT
AGCTCAATCAATCTGAGGGAACAATCCCACGGCCGATCGAAGGCGTTATG
GAGACTTGTACTTGCGCGAACACGAACGGGATAAGGTATTCCCAGTGACA
TTGGGTAGACCCTCAGTTGAAGAGTGTATTCATACTCGGTCAGACAATGT
TGCCTCAGAAGGGAAAAAAAGTGCTACCCCTATCGTAACATGCCTCCCAA
GTCTATCCCGGGTCCCTATGGTAAATATAACCGAACCTTAACCCCGCCCC
CCCCCGCCCTTTTTTTTTCGATCTCGCAGGGTGCCGAGGGTCCGCTTTCC
CTGCTCCTGGACAACGCTCCACCGATAGATGCCTCCAGGTGCGTACGTGG
TGTTGTACATCAGTCGGTAAAGTAGTAGCGCTTTTTTATCCATTCCTGCG
CCAGAGCTGGTACTCAGTTATGACTACCCTCAACTCATTCTCCCACCCAC
CCACCCGTCCACCGCCAGACCGAAACGGTACGGTTGCCATGCTTTGTTTT
TACCAATCCGCCGGAGGATTTAAAAATAAAAAAATGCTTCCCCGTTCCCC
CCGCCCACCCTCAATTTCTTTCCTCCTCTCCACCCCTCCCTGAAGTTGCC
CCTGGAGCTCGGCATGGAGCGTTCCTAGCCATCAGCACACGCTCACCTCC
CCCCCCCCCCGCCCACCCCCCCGCCTCCGCCGCCGTGGCCGCTGCCTGCG
CTATCTTACCGCATCTTGTACTGTTCATTGTTTGTCATGTCTCGTTTATC
ATGCTTTCGTTTGCGACCTGTTGTTTTTTGTTTTTTGGCTTTTTACTTAT
GACAAATATGTCGGCTGTGAGTTGAATGGTTGATGCTCACCTTTTGCAAG
CTGCGTGGTACGTCGGGCTCGCTTGTTCGATGTTGCCGAGTGTAATGTTC
GTCGTTTCCCGTTCTCCGTCTGTTCCGTTTCGTGCTCCAAGGTTTGATCC
GGACACGGCGGTACCCTCTCGTCGGGACGGTCAGGTGGAGGCGTTTTCCG
CTTGCCTCGCGGCGCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1271:1762..3779-

>mRNA_M-pyrifera_M_contig1271.5457.1 ID=mRNA_M-pyrifera_M_contig1271.5457.1|Name=mRNA_M-pyrifera_M_contig1271.5457.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig1271:1762..3779- (Macrocystis pyrifera P11B4 male)
CGGGGCGAGATCTCAGCGAAATCCGACTGGACCGTGGGACGGTTGAAGAA
AGAACTCGAGACGAAATTTCCCGGAAAAATCCCGGCGTCGTTGCAGCGGC
TTTTCAAGGGGACGATGCTTCTCCCCTCTCCGATGACTCTCGAGGAAGCG
TCTGAGCGGGGCGAGATCTCAGCGAAATCCGACTGGACCGTGGGACGGTT
GAAGAAAGAACTCGAGACGAAATTTCCCGGAAAAATCCCGGCGTCGTTGC
AGCGGCTTTTCAAGGGGACGATGCTTCTCCCCTCTCCGATGACTCTCGAG
GAAGCGTCTGAGGGTGCCGAGGGTCCGCTTTCCCTGCTCCTGGACAACGC
TCCACCGATAGATGCCTCCAGGGTGCCGAGGGTCCGCTTTCCCTGCTCCT
GGACAACGCTCCACCGATAGATGCCTCCAGGTTTGATCCGGACACGGCGG
TACCCTCTCGTCGGGACGGTCAGGTGGAGGCGTTTTCCGCTTGCCTCGCG
GCGCAAGTTTGATCCGGACACGGCGGTACCCTCTCGTCGGGACGGTCAGG
TGGAGGCGTTTTCCGCTTGCCTCGCGGCGCAA
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