mRNA_M-pyrifera_M_contig12706.5443.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12706.5443.1
Unique NamemRNA_M-pyrifera_M_contig12706.5443.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12706.5443.1 vs. uniprot
Match: D8LHU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.370e-32
Identity = 58/105 (55.24%), Postives = 85/105 (80.95%), Query Frame = 3 
Query:    3 VLDEMASLAYDKVLIDLGKEVSSHARKMADACPMNAAGVLKAIAQVAFYVSEPLVYLKTGEGGLNTEVLQDAMDDLLLLNSVFMDNHKFYEIFARDVVVSELNDP 317
            VLD+MA++AYDKV++ +G EVS H+R +A++CPM AA VLKAIAQ+AF++++PL Y +TG  G+ T +LQD M ++ LLN+ F +N +FYE++ARD V+SEL +P
Sbjct:  520 VLDDMATMAYDKVVMSMGNEVSPHSRMVAESCPMTAAEVLKAIAQLAFHIAQPLRYFQTGFSGITTVILQDTMKEMQLLNTAFQENKEFYEVYARDHVISELTNP 624
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12706.5443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHU0_ECTSI3.370e-3255.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12706contigM-pyrifera_M_contig12706:6199..8318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000440.1
Exons3
Model size317
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12706.5443.1prot_M-pyrifera_M_contig12706.5443.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12706 6213..8318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.1517994-UTR-M-pyrifera_M_contig12706:6198..62121622815784.1517994-UTR-M-pyrifera_M_contig12706:6198..6212Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12706 6199..6212 +
1692277567.753809-UTR-M-pyrifera_M_contig12706:6198..62121692277567.753809-UTR-M-pyrifera_M_contig12706:6198..6212Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12706 6199..6212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815784.1632216-CDS-M-pyrifera_M_contig12706:6212..62601622815784.1632216-CDS-M-pyrifera_M_contig12706:6212..6260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 6213..6260 +
1692277567.7700036-CDS-M-pyrifera_M_contig12706:6212..62601692277567.7700036-CDS-M-pyrifera_M_contig12706:6212..6260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 6213..6260 +
1622815784.1801205-CDS-M-pyrifera_M_contig12706:7106..72261622815784.1801205-CDS-M-pyrifera_M_contig12706:7106..7226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 7107..7226 +
1692277567.7803578-CDS-M-pyrifera_M_contig12706:7106..72261692277567.7803578-CDS-M-pyrifera_M_contig12706:7106..7226Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 7107..7226 +
1622815784.1919343-CDS-M-pyrifera_M_contig12706:8183..83181622815784.1919343-CDS-M-pyrifera_M_contig12706:8183..8318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 8184..8318 +
1692277567.791334-CDS-M-pyrifera_M_contig12706:8183..83181692277567.791334-CDS-M-pyrifera_M_contig12706:8183..8318Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12706 8184..8318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12706.5443.1

>prot_M-pyrifera_M_contig12706.5443.1 ID=prot_M-pyrifera_M_contig12706.5443.1|Name=mRNA_M-pyrifera_M_contig12706.5443.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MASLAYDKVLIDLGKEVSSHARKMADACPMNAAGVLKAIAQVAFYVSEPL
VYLKTGEGGLNTEVLQDAMDDLLLLNSVFMDNHKFYEIFARDVVVSELND
P
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mRNA from alignment at M-pyrifera_M_contig12706:6199..8318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12706.5443.1 ID=mRNA_M-pyrifera_M_contig12706.5443.1|Name=mRNA_M-pyrifera_M_contig12706.5443.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2120bp|location=Sequence derived from alignment at M-pyrifera_M_contig12706:6199..8318+ (Macrocystis pyrifera P11B4 male)
AGGTGCTGGACGAGATGGCATCATTGGCGTACGACAAAGTGCTCATCGAT
CTAGGCAAAGAGGTGGGAATATGAGGAGAGGGTACCCCCCTGACACGAGG
TTCTGCTGCGATTCAGAACAGCCCCCCGGTAGAAGGTATTGTGGGCGCAC
TATTTGTGGTGTAGGTGTTGGACAAGATGTACTACTAGTGGTAGTTGCCG
CACACGGAACTGGCGTGTGGCTGTTGCGCCTGGCTAAGCCGTGCGGGCGG
CTCGCTCGTGCGGCGCCCCGTCGTTGTTTGATCGTTGTCCCCGCTGTTGA
ATGCTTGGCAGGCGTTTTTTGTTTTCTGTGTGTCACTACGCGTTGGCGTG
AGATGTGTACAAGCGCACGTATTAGGCTCTCTTCCATGGCATGCTTCCGG
TTTGTCCGGGCTGTCGCTCCGGTTGGCGCTCTGCTCGCGACTTGGAGCTT
GTCGGGACGCTTGGCAACGGGCGGCGCACAGCAGTGCGTACCGCCCGTTT
AGTGAATCGATGCTCTGAAGCAACTACTGTAACGAGTGACGATAGTAATC
ATGACCCATCTTATCCACAAAAGCATACATACATACATTCCAGTATTTTT
ACCGTAGTAAGTAGGACCAAATGTTGTTTGCAAAAATAGGGAAATATATA
CCAGGTAGGTTTTTGTGTGTACCTCAGGTCCTATTTACTATGGGCACCCG
CAATAGTAAGAACATTTGTTGCTGATCACAATGTTTCCCCGCAAATAACA
ATGGTTGCGGTAGTGATGAGTACCGCAGACAGCAGTTGTCCTTTCTCGAC
ATTCCTTGTTCTCACGGCACCCTTACACGAGGGACCCCCCGCCCCCCCCC
TCCTCCCCCTGGCCCCCGCCCCTACATCCCGTGTGACCGCTGGAAACCCT
GAATGCAGGTCTCGAGCCACGCCCGAAAGATGGCCGATGCGTGCCCCATG
AACGCGGCCGGCGTCCTCAAAGCCATTGCCCAGGTGGCGTTCTACGTGTC
CGAGCCTCTGGTGTACCTCAAGACCGGGGTGAGACGAGGCTGACGGAATC
ACCTACGCGGGGCGGGCGTCTGAGCTACCCTGCTACCGAGCGTTTTTTTT
CTTTTTCTTTTTCGTGTGTTGCATCGGTTGTTCGTGCTCTGTTTTGGATC
AGTGGTTTTCGATGTATGTTGTGGACGATAGCTGGAAGGGGAAGTGAAGC
GCGAGACGCGGGGAGGGAGGGAGGGAAGGAGGGAAGGAGGACACTAGCGT
GAGATCTGGTAGAGTTGTTCCCCTTAACGATCATGGTTCGGCTTAGGCGT
GAAAAAGTTTCACGGCTTGGACAGATCATCTACAGATAGATCATGATCTA
TTAGTAGATCAGTTCACGCTTGTGAGAGGTTTGGTGTAACATTTGCATGG
GACATATCCAACTCAGGAAGCAATGTGCTAGATCACACAAATTGTATGGG
TCCCACCAGGCACCATGAGCTACATCCTACAAGATCAGGAATAGCTTGTC
TATCTGCCTCGAAACATGTACATAATGAGGTGTCAGTGGGAGTCGATGAT
CTGCCGGCGGTGTGAAACGTTTTAGCCAAGCGCCTCGCTTGGACACCGCC
TGAAAGAAAATGGTGGAAAAGTCCACGCCTTTTTTTTTTGCCTTTTTTTT
TTGGCTTTTTTTTTTGGCCTCGGGTGTCGTTTGTGTTGGTCCGCCAATGA
TTTTGTTTATTCTTTGCGCCCGGCCGATCTGCTGTCCGCCTGCTTTGCGT
CCGTGATTTCGGCTTCGTTGCTGTTGTTGGTGGTGGTGGTGATGTTGCTG
CTGCTGTTATTCTGCTGCTGTGCTTCGTGGTCGTGGTAAGTCGTCGTTGA
AGTGGTGTTTTTTTGTGTGCTGTTGTAAGGGTACCTGTTGTCGCTGTCGT
CGTTGACGCTAAATCGTGTGTTCGCCTGTTTGCCTTGTTCTTGCTCTCTC
GATTGATGCTGCTGCCGCTGTTCTCCTCTCGTTAGGAGGGTGGGCTGAAC
ACGGAGGTCCTTCAAGACGCCATGGACGACCTTCTGCTTCTGAACTCCGT
CTTCATGGACAACCATAAGTTCTACGAGATCTTCGCGAGGGACGTGGTTG
TCTCGGAGCTAAACGACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12706:6199..8318+

>mRNA_M-pyrifera_M_contig12706.5443.1 ID=mRNA_M-pyrifera_M_contig12706.5443.1|Name=mRNA_M-pyrifera_M_contig12706.5443.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig12706:6199..8318+ (Macrocystis pyrifera P11B4 male)
ATGGCATCATTGGCGTACGACAAAGTGCTCATCGATCTAGGCAAAGAGAT
GGCATCATTGGCGTACGACAAAGTGCTCATCGATCTAGGCAAAGAGGTCT
CGAGCCACGCCCGAAAGATGGCCGATGCGTGCCCCATGAACGCGGCCGGC
GTCCTCAAAGCCATTGCCCAGGTGGCGTTCTACGTGTCCGAGCCTCTGGT
GTACCTCAAGACCGGGGTCTCGAGCCACGCCCGAAAGATGGCCGATGCGT
GCCCCATGAACGCGGCCGGCGTCCTCAAAGCCATTGCCCAGGTGGCGTTC
TACGTGTCCGAGCCTCTGGTGTACCTCAAGACCGGGGAGGGTGGGCTGAA
CACGGAGGTCCTTCAAGACGCCATGGACGACCTTCTGCTTCTGAACTCCG
TCTTCATGGACAACCATAAGTTCTACGAGATCTTCGCGAGGGACGTGGTT
GTCTCGGAGCTAAACGACCCGGAGGGTGGGCTGAACACGGAGGTCCTTCA
AGACGCCATGGACGACCTTCTGCTTCTGAACTCCGTCTTCATGGACAACC
ATAAGTTCTACGAGATCTTCGCGAGGGACGTGGTTGTCTCGGAGCTAAAC
GACCCG
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