mRNA_M-pyrifera_M_contig12689.5412.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12689.5412.1
Unique NamemRNA_M-pyrifera_M_contig12689.5412.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12689.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12689contigM-pyrifera_M_contig12689:4906..5586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size681
Cds size414
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.637564-CDS-M-pyrifera_M_contig12689:4905..53191622815782.637564-CDS-M-pyrifera_M_contig12689:4905..5319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12689 4906..5319 +
1692277567.053156-CDS-M-pyrifera_M_contig12689:4905..53191692277567.053156-CDS-M-pyrifera_M_contig12689:4905..5319Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12689 4906..5319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.650243-UTR-M-pyrifera_M_contig12689:5319..55861622815782.650243-UTR-M-pyrifera_M_contig12689:5319..5586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12689 5320..5586 +
1692277567.0646353-UTR-M-pyrifera_M_contig12689:5319..55861692277567.0646353-UTR-M-pyrifera_M_contig12689:5319..5586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12689 5320..5586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12689.5412.1prot_M-pyrifera_M_contig12689.5412.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12689 4906..5319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12689.5412.1

>prot_M-pyrifera_M_contig12689.5412.1 ID=prot_M-pyrifera_M_contig12689.5412.1|Name=mRNA_M-pyrifera_M_contig12689.5412.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MHPPRPSKRRQHNSPTTQTNTKYTIRRQQNKERLCTAHEQKITRRFAPLP
RTQALKSGGQPKTTLDVGQRPPDHDLASVSIEKVERAQRSNKHHATVVPP
PISTNPVASLGMGAKSYPTLRFHARLISNLSNLPRPC*
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mRNA from alignment at M-pyrifera_M_contig12689:4906..5586+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12689.5412.1 ID=mRNA_M-pyrifera_M_contig12689.5412.1|Name=mRNA_M-pyrifera_M_contig12689.5412.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=681bp|location=Sequence derived from alignment at M-pyrifera_M_contig12689:4906..5586+ (Macrocystis pyrifera P11B4 male)
ATGCACCCACCCAGGCCCTCGAAACGGCGCCAACACAACAGCCCAACGAC
GCAAACGAACACAAAATATACCATACGGCGACAGCAAAACAAGGAGCGAT
TGTGTACAGCGCACGAACAGAAGATCACGAGGCGCTTTGCACCGCTGCCT
CGGACGCAGGCCCTCAAGAGCGGTGGTCAGCCAAAGACAACCTTAGACGT
TGGTCAGCGACCACCCGACCACGACCTTGCATCCGTCTCGATCGAAAAAG
TGGAACGCGCACAGCGCTCAAACAAACACCACGCAACCGTGGTGCCCCCA
CCTATCTCCACAAACCCCGTCGCTTCACTGGGCATGGGAGCGAAATCGTA
CCCTACCTTGCGCTTTCATGCACGCCTAATATCCAACCTCTCCAACCTCC
CGCGCCCGTGTTGATGAAAAGTCCATGTTTTCGTCAAAGAATCTCCAAAT
TATATCCCTGTCGCAAAGGGCTGTCGCAGAAGGGCTTGGTCCTCCGACGA
AACATGCAGGTGGTATCTGGATGGTGCCGGCTCATGCACAACACGCACAG
TCTGTTCAACGCGCTCGATACAACTCAAGAGGCCAAATCAAGGTCACCCC
CTCGAAAATCAGCATTCACGGGAAGGGGGGCGGAGCGAGCCACGCAACCC
GGCCGAATGTCGATAGGGATTTGAGCGCTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12689:4906..5586+

>mRNA_M-pyrifera_M_contig12689.5412.1 ID=mRNA_M-pyrifera_M_contig12689.5412.1|Name=mRNA_M-pyrifera_M_contig12689.5412.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig12689:4906..5586+ (Macrocystis pyrifera P11B4 male)
ATGCACCCACCCAGGCCCTCGAAACGGCGCCAACACAACAGCCCAACGAC
GCAAACGAACACAAAATATACCATACGGCGACAGCAAAACAAGGAGCGAT
TGTGTACAGCGCACGAACAGAAGATCACGAGGCGCTTTGCACCGCTGCCT
CGGACGCAGGCCCTCAAGAGCGGTGGTCAGCCAAAGACAACCTTAGACGT
TGGTCAGCGACCACCCGACCACGACCTTGCATCCGTCTCGATCGAAAAAG
TGGAACGCGCACAGCGCTCAAACAAACACCACGCAACCGTGGTGCCCCCA
CCTATCTCCACAAACCCCGTCGCTTCACTGGGCATGGGAGCGAAATCGTA
CCCTACCTTGCGCTTTCATGCACGCCTAATATCCAACCTCTCCAACCTCC
CGCGCCCGTGTTGAATGCACCCACCCAGGCCCTCGAAACGGCGCCAACAC
AACAGCCCAACGACGCAAACGAACACAAAATATACCATACGGCGACAGCA
AAACAAGGAGCGATTGTGTACAGCGCACGAACAGAAGATCACGAGGCGCT
TTGCACCGCTGCCTCGGACGCAGGCCCTCAAGAGCGGTGGTCAGCCAAAG
ACAACCTTAGACGTTGGTCAGCGACCACCCGACCACGACCTTGCATCCGT
CTCGATCGAAAAAGTGGAACGCGCACAGCGCTCAAACAAACACCACGCAA
CCGTGGTGCCCCCACCTATCTCCACAAACCCCGTCGCTTCACTGGGCATG
GGAGCGAAATCGTACCCTACCTTGCGCTTTCATGCACGCCTAATATCCAA
CCTCTCCAACCTCCCGCGCCCGTGTTGA
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