mRNA_M-pyrifera_M_contig126868.5406.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126868.5406.1
Unique NamemRNA_M-pyrifera_M_contig126868.5406.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: F0ZAS8_DICPU (HGSNAT_cat domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZAS8_DICPU)

HSP 1 Score: 77.4 bits (189), Expect = 3.090e-14
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            NL+A  F FS FRVMG+LQRIALCY  +  S+L  P+ L  L  L TT  Y +++   P+P         +PTCN   + D  +  P  M+ P DPEG+ STLS+    + G+  G
Sbjct:   91 NLMAHHFVFSSFRVMGVLQRIALCYFLSCVSFLCFPVFLQRLFLLGTTVTYISVMYALPVPG--CGKGVLTPTCNAGAYLDFKVFGPN-MIHPNDPEGLLSTLSAFITTWMGLEFG 203          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: UPI0006450B5E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450B5E)

HSP 1 Score: 74.7 bits (182), Expect = 3.300e-13
Identity = 48/123 (39.02%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALL-------TPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            NL+A +F FS FRVMG+LQRI++CY  +  S+LLLP     L  + +   Y  L+   P+P  C   D  +PTCN A + D  +L       T  + + PTDPEG+ ST S+    + G+ +G
Sbjct:  129 NLMAHKFVFSTFRVMGVLQRISICYFFSCCSFLLLPKWAQRLALIGSATIYLGLMYGYPVPG-CGRGD-ITPTCNAAAYIDNLILRKNIHILTQSYRMHPTDPEGIVSTFSAYITTWMGLELG 249          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: D3B3D2_POLPP (HGSNAT_cat domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B3D2_POLPP)

HSP 1 Score: 74.3 bits (181), Expect = 4.430e-13
Identity = 46/119 (38.66%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVGALL 357
            NL+A +F FS FRVMG+LQRI+LCY  +  S++LLP     +  +++   Y  L+   P+P         + +CN AG+ D  +L    M+ PTDPEG  ST S+    + GV +G +L
Sbjct:  126 NLMAHKFVFSTFRVMGVLQRISLCYCFSCCSFMLLPKWAQRVALVISATIYLCLMYAYPVPG--CGRGNITRSCNAAGYIDNLILRKN-MIHPTDPEGFISTFSAFITTWMGVELGRIL 241          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: A0A0L0DEW9_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEW9_THETB)

HSP 1 Score: 72.8 bits (177), Expect = 1.460e-12
Identity = 43/124 (34.68%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVGALLLLARR 372
            NL    F F   R+MG+LQR+ LCY   +  YL LP     +  +L  G Y  ++    +P  C    + +P CN   + DR++     M+ P DPEG+TSTL++    +AG+ +G +L+ A R
Sbjct:   85 NLQGTNFEFGKLRIMGVLQRLGLCYGLVAVLYLTLPPLGQRIAVVLGAGLYLVIMYAVDVPDGCGDG-KLTPYCNGGAYIDRSVFGRSNMMWPNDPEGLTSTLTATVTTFAGLELGRILVNAPR 207          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: A0A8J4Q786_9MYCE (HGSNAT_cat domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q786_9MYCE)

HSP 1 Score: 69.7 bits (169), Expect = 1.950e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            NL+A  F F  FR+MG+LQRIA+CY  +  S+L  P+ L  L  + T+  Y  L+    +P       + +P+CN   + D  +  P  M+ P DPEG+ STL +    + GV  G
Sbjct:  141 NLMAHHFVFDSFRIMGVLQRIAICYFLSCMSFLCFPVFLQRLFLIATSTVYLGLMYGWNVPG--CGKGQLTPSCNAGSYIDNKVFGPN-MIHPNDPEGLLSTLMAFVTTWMGVEFG 253          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: I7M9K5_TETTS (Heparan-alpha-glucosaminide N-acetyltransferase, putative n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M9K5_TETTS)

HSP 1 Score: 68.6 bits (166), Expect = 5.020e-11
Identity = 39/109 (35.78%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   34 FRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYT----PLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            FR+MG+LQRIA+CY   STSYL L       +  +  G +  + +Y      +P  C  A+  +PTCN   + D  + T  +M+ P+DPEG+ +TL +L   + G+  G
Sbjct:  164 FRIMGVLQRIAICYFVTSTSYLFLQ---NFAVQFVLNGVFLLIYIYFMYFFDVPDGC-GANNVTPTCNFGRYLDMQIFTLNYMMKPSDPEGLFTTLGALVTTFIGLCYG 268          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: A0A152A422_9MYCE (HGSNAT_cat domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A422_9MYCE)

HSP 1 Score: 68.2 bits (165), Expect = 6.670e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            NL+A +F F  FR+MG+LQRIALCY     S+L     +  L     +  Y AL+   P+P  C   +  +PTCN   + D ++     M+ P DPEG+ STL +    + GV  G
Sbjct:  124 NLMAHKFVFDSFRIMGVLQRIALCYFLXXXSFLCFSKWVQRLFLAACSIVYLALMYGYPVPGGCGRGNT-TPTCNAGAYFDHSVFHNN-MIQPNDPEGLLSTLMAFVTCWGGVEFG 237          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: F4PYY8_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PYY8_CAVFA)

HSP 1 Score: 67.4 bits (163), Expect = 1.400e-10
Identity = 41/116 (35.34%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            NL+A +F F  FRVMG+LQRI++CY A   S+LLLPL    +  +     Y +++    +P         +P+CN   + D ++L    M+ P DPEG+ ST S+    + G+ +G
Sbjct:  139 NLMAHKFVFDSFRVMGVLQRISICYFACCCSFLLLPLVGQRIFLVACAAIYLSVMYGLDVPG--CGRGVLTPSCNAGSYIDNSVLGAN-MIHPNDPEGLLSTFSAFITTWMGLELG 251          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: A0A345ZY40_9HYPH (DUF5009 domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZY40_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 3.070e-10
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   22 HFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVTSTLSSLFNAYAGVAVGALL 357
            H++  R++G+LQRIA+CY AAS  +L L     L   ++  GGY AL+ + P+P     A  F+P  N+A   DR  L  R      DPEG+ STL ++ +   GV  G +L
Sbjct:  128 HWADVRLLGVLQRIAICYLAASLLFLHLNWRGLLATVVVLLGGYWALMTFVPVPG--IGAGSFAPDANLANWIDRNYLPGRLWDGTRDPEGLLSTLPAVGSCLIGVLCGLVL 237          
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Match: A0A8J8NNI9_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NNI9_HALGN)

HSP 1 Score: 65.9 bits (159), Expect = 4.460e-10
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1
Query:   37 RVMGILQRIALCYAAASTSYL----------LLPLSLTLLIPLLTTGGYGALLLYTPLPANCTSADRFSPTCNVAGHADRALL--TPRFMLTPTDPEGVTSTLSSLFNAYAGVAVG 348
            R+MG+LQRI+LCY   S+SYL           L   L + I  +        +LY      C      +  CN  G+ DRA+   + R+M  P DPEG+ STLSSL N YAG++ G
Sbjct:  146 RIMGVLQRISLCYLIVSSSYLCFRKIQYHAIFLASCLAIYIGFMFGYPLDFNILYDTSFRQCKGRGILTKICNFCGYFDRAIFGSSSRWMTYPNDPEGIFSTLSSLINVYAGLSFG 261          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126868.5406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0ZAS8_DICPU3.090e-1441.38HGSNAT_cat domain-containing protein (Fragment) n=... [more]
UPI0006450B5E3.300e-1339.02hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3B3D2_POLPP4.430e-1338.66HGSNAT_cat domain-containing protein n=1 Tax=Polys... [more]
A0A0L0DEW9_THETB1.460e-1234.68Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A8J4Q786_9MYCE1.950e-1136.21HGSNAT_cat domain-containing protein n=1 Tax=Polys... [more]
I7M9K5_TETTS5.020e-1135.78Heparan-alpha-glucosaminide N-acetyltransferase, p... [more]
A0A152A422_9MYCE6.670e-1137.07HGSNAT_cat domain-containing protein n=1 Tax=Tiegh... [more]
F4PYY8_CAVFA1.400e-1035.34Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A345ZY40_9HYPH3.070e-1038.39DUF5009 domain-containing protein n=1 Tax=Pseudola... [more]
A0A8J8NNI9_HALGN4.460e-1037.93Uncharacterized protein n=1 Tax=Halteria grandinel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126868contigM-pyrifera_M_contig126868:2..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog5786.XP_003284503.1
KEGG koko:K10532
KEGG ReactionR07815
KEGG Pathwayko00531,ko01100,ko04142,map00531,map01100,map04142
KEGG ModuleM00078
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Protein of unknown function (DUF1624)
EggNOG OGs3XG1T@554915,COG4299@1,KOG4683@2759
EC2.3.1.78
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815782.4297225-CDS-M-pyrifera_M_contig126868:1..3731622815782.4297225-CDS-M-pyrifera_M_contig126868:1..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126868 2..373 +
1692277566.9500315-CDS-M-pyrifera_M_contig126868:1..3731692277566.9500315-CDS-M-pyrifera_M_contig126868:1..373Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126868 2..373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126868.5406.1prot_M-pyrifera_M_contig126868.5406.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126868 2..373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126868.5406.1

>prot_M-pyrifera_M_contig126868.5406.1 ID=prot_M-pyrifera_M_contig126868.5406.1|Name=mRNA_M-pyrifera_M_contig126868.5406.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
NLLAARFHFSGFRVMGILQRIALCYAAASTSYLLLPLSLTLLIPLLTTGG
YGALLLYTPLPANCTSADRFSPTCNVAGHADRALLTPRFMLTPTDPEGVT
STLSSLFNAYAGVAVGALLLLARR
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mRNA from alignment at M-pyrifera_M_contig126868:2..373+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126868.5406.1 ID=mRNA_M-pyrifera_M_contig126868.5406.1|Name=mRNA_M-pyrifera_M_contig126868.5406.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig126868:2..373+ (Macrocystis pyrifera P11B4 male)
AACCTCCTCGCCGCGCGCTTCCATTTCTCCGGCTTCCGCGTCATGGGCAT CCTCCAGCGCATCGCGTTGTGTTACGCGGCCGCGTCCACGTCCTATCTGC TGCTCCCGCTGTCCCTCACGCTCCTCATTCCGCTGCTCACCACCGGCGGC TACGGCGCGCTCCTCCTGTATACCCCCCTCCCCGCCAACTGCACCTCCGC CGATCGGTTCTCGCCCACCTGCAACGTCGCTGGCCACGCCGACCGCGCCC TGCTCACGCCGCGGTTCATGCTCACGCCCACAGACCCGGAGGGAGTCACG TCCACCCTCTCGTCCCTGTTCAACGCGTACGCTGGCGTCGCAGTCGGTGC TCTCCTCCTTCTCGCCCGCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126868:2..373+

>mRNA_M-pyrifera_M_contig126868.5406.1 ID=mRNA_M-pyrifera_M_contig126868.5406.1|Name=mRNA_M-pyrifera_M_contig126868.5406.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig126868:2..373+ (Macrocystis pyrifera P11B4 male)
AACCTCCTCGCCGCGCGCTTCCATTTCTCCGGCTTCCGCGTCATGGGCAT
CCTCCAGCGCATCGCGTTGTGTTACGCGGCCGCGTCCACGTCCTATCTGC
TGCTCCCGCTGTCCCTCACGCTCCTCATTCCGCTGCTCACCACCGGCGGC
TACGGCGCGCTCCTCCTGTATACCCCCCTCCCCGCCAACTGCACCTCCGC
CGATCGGTTCTCGCCCACCTGCAACGTCGCTGGCCACGCCGACCGCGCCC
TGCTCACGCCGCGGTTCATGCTCACGCCCACAGACCCGGAGGGAGTCACG
TCCACCCTCTCGTCCCTGTTCAACGCGTACGCTGGCGTCGCAGTCGGTGC
TCTCCTCCTTCTCGCCCGCCGCAACCTCCTCGCCGCGCGCTTCCATTTCT
CCGGCTTCCGCGTCATGGGCATCCTCCAGCGCATCGCGTTGTGTTACGCG
GCCGCGTCCACGTCCTATCTGCTGCTCCCGCTGTCCCTCACGCTCCTCAT
TCCGCTGCTCACCACCGGCGGCTACGGCGCGCTCCTCCTGTATACCCCCC
TCCCCGCCAACTGCACCTCCGCCGATCGGTTCTCGCCCACCTGCAACGTC
GCTGGCCACGCCGACCGCGCCCTGCTCACGCCGCGGTTCATGCTCACGCC
CACAGACCCGGAGGGAGTCACGTCCACCCTCTCGTCCCTGTTCAACGCGT
ACGCTGGCGTCGCAGTCGGTGCTCTCCTCCTTCTCGCCCGCCGC
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