mRNA_M-pyrifera_M_contig12680.5389.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12680.5389.1
Unique NamemRNA_M-pyrifera_M_contig12680.5389.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12680.5389.1 vs. uniprot
Match: A0A6H5K5N1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5N1_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.280e-11
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   19 GKSDPYVKMKLGREQVMKTDTKKRTLKPRYDETFDLLVYER 141
            GKSDPYV +KLGR Q MKTD K RTL PR+DETFDLLVYER
Sbjct: 1129 GKSDPYVCVKLGRGQEMKTDVKSRTLNPRFDETFDLLVYER 1169
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BLAST of mRNA_M-pyrifera_M_contig12680.5389.1 vs. uniprot
Match: A0A835YTN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTN3_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.060e-5
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:   13 FTGKSDPYVKMKLGREQVMKTDTKKRTLKPRYDETFDLLVYER 141
              GKSDPYV +KLG E+V KT     TL PR+D+ FDLLV+++
Sbjct:  516 IVGKSDPYVVVKLGEEEV-KTKVMNNTLDPRWDQQFDLLVHDK 557
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12680.5389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N1_9PHAE1.280e-1180.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTN3_9STRA8.060e-555.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12680contigM-pyrifera_M_contig12680:285..425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue9.1e-10
Seed eggNOG ortholog2880.D7FRL5
KEGG koko:K12486,ko:K19938
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.C2 domain
EggNOG OGsCOG5038@1,KOG1012@2759,KOG2513@1,KOG2513@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815781.7494485-CDS-M-pyrifera_M_contig12680:284..4251622815781.7494485-CDS-M-pyrifera_M_contig12680:284..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12680 285..425 +
1692277566.660598-CDS-M-pyrifera_M_contig12680:284..4251692277566.660598-CDS-M-pyrifera_M_contig12680:284..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12680 285..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12680.5389.1prot_M-pyrifera_M_contig12680.5389.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12680 285..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12680.5389.1

>prot_M-pyrifera_M_contig12680.5389.1 ID=prot_M-pyrifera_M_contig12680.5389.1|Name=mRNA_M-pyrifera_M_contig12680.5389.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
HSPQFTGKSDPYVKMKLGREQVMKTDTKKRTLKPRYDETFDLLVYER
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mRNA from alignment at M-pyrifera_M_contig12680:285..425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12680.5389.1 ID=mRNA_M-pyrifera_M_contig12680.5389.1|Name=mRNA_M-pyrifera_M_contig12680.5389.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig12680:285..425+ (Macrocystis pyrifera P11B4 male)
CATTCACCACAATTTACAGGAAAGTCGGACCCATACGTGAAGATGAAGCT
CGGCAGGGAACAAGTGATGAAGACCGACACGAAGAAGCGGACTCTGAAGC
CCAGATACGACGAGACCTTCGACCTCCTCGTCTACGAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12680:285..425+

>mRNA_M-pyrifera_M_contig12680.5389.1 ID=mRNA_M-pyrifera_M_contig12680.5389.1|Name=mRNA_M-pyrifera_M_contig12680.5389.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig12680:285..425+ (Macrocystis pyrifera P11B4 male)
CATTCACCACAATTTACAGGAAAGTCGGACCCATACGTGAAGATGAAGCT
CGGCAGGGAACAAGTGATGAAGACCGACACGAAGAAGCGGACTCTGAAGC
CCAGATACGACGAGACCTTCGACCTCCTCGTCTACGAGCGCCATTCACCA
CAATTTACAGGAAAGTCGGACCCATACGTGAAGATGAAGCTCGGCAGGGA
ACAAGTGATGAAGACCGACACGAAGAAGCGGACTCTGAAGCCCAGATACG
ACGAGACCTTCGACCTCCTCGTCTACGAGCGC
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