mRNA_M-pyrifera_M_contig126469.5335.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126469.5335.1
Unique NamemRNA_M-pyrifera_M_contig126469.5335.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A7K2DRH1_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2DRH1_9ACTN)

HSP 1 Score: 153 bits (387), Expect = 1.110e-42
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = 1
Query:   10 CPYEG-GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            CPY G G R   +  G  ++L E++    NG+ +VP+DLPSTIAS +P   + ++ G+  DG  G SG  TQ+E+G ++  M D +SN+ Y GS+DQ+M+K + EA  QG+DVDS+ W+C L+CYTP+F+E  G+  E TY+W++FLPF+E D N+ L  F+
Sbjct:   55 CPYAGTGPRAVQSQVGHVQWLLENVESNLNGVYLVPSDLPSTIASTMPQLRSFQELGIVIDGEPGVSGFTTQSEYGAYIQVMRDADSNFAYTGSDDQSMIKWRSEAEAQGLDVDSIIWMCQLACYTPSFLE-AGDVIENTYIWLWFLPFDEVDHNQELADFM 215          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6B0ZK75_9ACTN (ABC transporter substrate-binding protein n=5 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B0ZK75_9ACTN)

HSP 1 Score: 153 bits (387), Expect = 5.750e-41
Identity = 74/162 (45.68%), Postives = 110/162 (67.90%), Query Frame = 1
Query:   10 CPYEG-GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            CPY G G R   +  G  ++L E++    NG+ +VP+DLPSTIAS +P   + ++ G+  DG  G SG  TQ+E+G ++  M D +SN+ Y GS+DQ+M+K + EA  QG+DVDS+ W+C L+CYTP+F+E  G+  E TY+W++FLPF+E D N+ L  F+
Sbjct:  274 CPYAGTGPRAVQSQVGHVQWLLENVESNLNGVYLVPSDLPSTIASTMPQLRSFQELGIVIDGEPGVSGFTTQSEYGAYIQVMRDADSNFAYTGSDDQSMIKWRSEAEAQGLDVDSIIWMCQLACYTPSFLE-AGDVIENTYIWLWFLPFDEVDHNQELADFM 434          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6G2KM00_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2KM00_9ACTN)

HSP 1 Score: 140 bits (353), Expect = 5.830e-36
Identity = 74/165 (44.85%), Postives = 108/165 (65.45%), Query Frame = 1
Query:    1 GASCPYEG-GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            G+ CPY G G R   +  G  +++ E++  + +G+ ++P DLPSTIA+ +P   + ++ GV  D   G SG  TQAE+G F+  M + NSN+ Y GS+DQ+M+K + EA   G++ D+V W+CS +CYT AF+E G E  EGTYVW+ FLPFEEA  N+ L  F+
Sbjct:  308 GSECPYFGYGRRTAQSQVGPVQWILENVQPDLHGVYLIPGDLPSTIAATMPQIRSFQEIGVGIDAEPGVSGFTTQAEYGAFLQTMREANSNFAYTGSDDQSMIKWRSEADALGLNSDNVIWMCSQACYTSAFLEAGAEI-EGTYVWLPFLPFEEAAQNQELADFM 471          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A7K2CT16_9ACTN (ABC transporter substrate-binding protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CT16_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 3.240e-33
Identity = 71/162 (43.83%), Postives = 103/162 (63.58%), Query Frame = 1
Query:   10 CPYEG-GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            CPY G G R   +  G   ++ +++  + +G+ ++P DLPSTI S +P   + ++ GV  D     SG  TQAE+G F+  M + NSN+ Y GS+DQ+M+K + EA   G++ D+V W+CS +CYT AF+E G E  EGTYVW+ FLPFEEA  N+ L  F+
Sbjct:  291 CPYSGHGPRTAQSQVGPVWWILKNVQPDLHGVYLIPGDLPSTIMSTMPQIRSFQEIGVVIDAEPWVSGFTTQAEYGAFLQTMREANSNFAYTGSDDQSMIKWRSEADALGLNSDNVIWMCSQACYTSAFLEAGAEI-EGTYVWLPFLPFEEAAQNQELADFM 451          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6J7KCC5_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J7KCC5_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 1.060e-28
Identity = 69/157 (43.95%), Postives = 91/157 (57.96%), Query Frame = 1
Query:   25 GERGYVAATGAQEFLAESL-GVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            G R   A  G  EF      G    G+  VP DLP+T+ S     AAQ+++G+T       SG   Q+ F  +V AM  +  N+ Y GSND AM K+++EAA QG + D   W CSL+CYT  F + GG A EGTYVW  F+PFEEAD+N+ L A++
Sbjct:    3 GSRDLKAFVGQYEFYKTLYNGTPMKGLYQVPGDLPTTVQSATAQIAAQQKSGITVTDAMKVSGRTEQSGFTTYVQAMKASGDNFFYGGSNDVAMTKMRKEAAAQGFN-DVKVWSCSLACYTENF-KAGGAAVEGTYVWTQFIPFEEADTNKALKAYV 157          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A357ZZB6_9ACTN (Peripla_BP_6 domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A357ZZB6_9ACTN)

HSP 1 Score: 117 bits (292), Expect = 2.780e-28
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 1
Query:   25 GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            G R   A  GA ++  +++     G+ +VP DLP+TI S       Q+QAGV W      SG + Q+ F  +V A+ +   NY Y GSND AM KL++EA  QG+    V W CSL+CYT  F + GG A +GTYVWM F+PFEEA SN  + A++
Sbjct:  194 GVRDLKAFVGATKYY-QTVQPNLKGVFLVPGDLPTTIQSATYQIEGQKQAGVNWIDALKVSGRSEQSAFNTYVQALKNGGGNYAYMGSNDVAMTKLRKEATAQGLTGVDV-WACSLACYTENF-KTGGSAVDGTYVWMQFVPFEEASSNSAVKAYV 346          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6I3D4B3_9ACTN (ABC transporter substrate-binding protein n=4 Tax=root TaxID=1 RepID=A0A6I3D4B3_9ACTN)

HSP 1 Score: 117 bits (294), Expect = 6.880e-28
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 1
Query:   25 GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            G R   A  GA ++  +++     G+ +VP DLP+TI S       Q+QAGV W      SG + Q+ F  +V A+ +   NY Y GSND AM KL++EA  QG+    V W CSL+CYT  F + GG A +GTYVWM F+PFEEA SN+ + A++
Sbjct:  256 GVRDLKAFVGATKYY-QTVQPNLKGVFLVPGDLPTTIQSATYQIEGQKQAGVNWIDALKVSGRSEQSAFNTYVQALKNGGGNYAYMGSNDVAMTKLRKEATAQGLTGVDV-WACSLACYTENF-KTGGSAVDGTYVWMQFIPFEEASSNKAVKAYV 408          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6I3I0N5_9ACTN (ABC transporter substrate-binding protein n=8 Tax=root TaxID=1 RepID=A0A6I3I0N5_9ACTN)

HSP 1 Score: 116 bits (291), Expect = 1.080e-27
Identity = 70/162 (43.21%), Postives = 92/162 (56.79%), Query Frame = 1
Query:   10 CPYEGGERGYVAATGAQEFLAESL-GVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            C    G R   A  G  EF      G    G+  VP DLP+T+ S     AAQ+++G+T       SG   Q+ F  +V AM  +  N+ Y GSND AM K+++EAA QG + D   W CSL+CYT  F + GG A EGTYVW  F+PFEEAD+N+ L A++
Sbjct:  188 CTTLSGSRDLKAFVGQYEFYKTLYNGTPMKGLYQVPGDLPTTVQSATAQIAAQQKSGITVTDAMKVSGRTEQSGFTTYVQAMKASGDNFFYGGSNDVAMTKMRKEAAAQGFN-DVKVWSCSLACYTENF-KAGGAAVEGTYVWTQFIPFEEADTNKALKAYV 347          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6L6EPH1_9ACTN (ABC transporter substrate-binding protein n=3 Tax=root TaxID=1 RepID=A0A6L6EPH1_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 4.030e-27
Identity = 71/166 (42.77%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    7 SCPYEG----GERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSNENLGAFL 492
            +CP +G    G R   A  G  ++L +S   +  GI +VP DLP+T+ S      A ++ G+     F  SG+  QA F  FV A+ DN+ NYVYNGSND  M+K+++E+A QG     V W CSL+CYT  F  EG    + TYVW  FLPFEEA  N +L A++
Sbjct:  186 TCPSDGKPPTGPRDLKAFVGFLKYL-QSQQSDLKGIFLVPGDLPTTVQSATYQIEANKKIGINIVDSFKTSGSLQQAGFTPFVQALKDNSGNYVYNGSNDANMIKMRKESAAQGYSGVKV-WACSLACYTEKFKAEGA-TVDNTYVWTQFLPFEEASENTSLKAYI 348          
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Match: A0A6I3F5J3_9ACTN (ABC transporter substrate-binding protein n=2 Tax=root TaxID=1 RepID=A0A6I3F5J3_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 2.170e-26
Identity = 71/155 (45.81%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    7 SCPYEGGERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVPITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQAMLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLPFEEADSN 471
            SC    G R   A TG  +F  ++L      + +VP DLP+TI S     AA +Q+G+        SG   Q+ F  +V A+   N N VYNGSND  M K+++EAA QG+D   V W CSL+CYT  F  +G  A EGTYVWM FLPFEEA SN
Sbjct:  195 SCKTLTGSRELKAFTGTFDFF-KTLAPSLTALWLVPGDLPTTIQSSTYQIAAAKQSGINVTDAMKVSGRTEQSGFTTYVQAIKAGNDNMVYNGSNDVVMTKMRKEAAAQGLDSVKV-WGCSLACYTDNFKAQG-TAVEGTYVWMQFLPFEEASSN 346          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126469.5335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A7K2DRH1_9ACTN1.110e-4245.68ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A6B0ZK75_9ACTN5.750e-4145.68ABC transporter substrate-binding protein n=5 Tax=... [more]
A0A6G2KM00_9ACTN5.830e-3644.85ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7K2CT16_9ACTN3.240e-3343.83ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A6J7KCC5_9ZZZZ1.060e-2843.95Unannotated protein n=1 Tax=freshwater metagenome ... [more]
A0A357ZZB6_9ACTN2.780e-2843.59Peripla_BP_6 domain-containing protein (Fragment) ... [more]
A0A6I3D4B3_9ACTN6.880e-2843.59ABC transporter substrate-binding protein n=4 Tax=... [more]
A0A6I3I0N5_9ACTN1.080e-2743.21ABC transporter substrate-binding protein n=8 Tax=... [more]
A0A6L6EPH1_9ACTN4.030e-2742.77ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A6I3F5J3_9ACTN2.170e-2645.81ABC transporter substrate-binding protein n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126469contigM-pyrifera_M_contig126469:3..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815779.0759883-CDS-M-pyrifera_M_contig126469:2..4941622815779.0759883-CDS-M-pyrifera_M_contig126469:2..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126469 3..494 -
1692277565.355212-CDS-M-pyrifera_M_contig126469:2..4941692277565.355212-CDS-M-pyrifera_M_contig126469:2..494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126469 3..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126469.5335.1prot_M-pyrifera_M_contig126469.5335.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126469 3..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126469.5335.1

>prot_M-pyrifera_M_contig126469.5335.1 ID=prot_M-pyrifera_M_contig126469.5335.1|Name=mRNA_M-pyrifera_M_contig126469.5335.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
GASCPYEGGERGYVAATGAQEFLAESLGVEFNGIAIVPADLPSTIASMVP
ITAAQEQAGVTWDGIFGASGAATQAEFGKFVAAMSDNNSNYVYNGSNDQA
MLKLKREAAVQGIDVDSVTWLCSLSCYTPAFIEEGGEAAEGTYVWMFFLP
FEEADSNENLGAFL
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mRNA from alignment at M-pyrifera_M_contig126469:3..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126469.5335.1 ID=mRNA_M-pyrifera_M_contig126469.5335.1|Name=mRNA_M-pyrifera_M_contig126469.5335.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig126469:3..494- (Macrocystis pyrifera P11B4 male)
GGCGCGTCCTGCCCCTACGAGGGCGGTGAGCGTGGCTATGTCGCCGCCAC CGGCGCCCAGGAATTCCTGGCCGAGTCGCTCGGTGTCGAATTCAACGGCA TCGCCATCGTGCCCGCCGATCTGCCTTCGACCATCGCTTCGATGGTGCCG ATCACCGCTGCGCAGGAACAGGCCGGGGTGACCTGGGACGGCATCTTCGG TGCCTCGGGCGCGGCCACCCAGGCCGAGTTCGGCAAGTTCGTCGCCGCGA TGAGCGACAACAACTCGAACTACGTCTACAACGGCTCCAACGATCAGGCG ATGCTCAAGCTGAAGCGAGAAGCCGCGGTGCAGGGCATCGACGTCGACTC GGTCACCTGGCTCTGCTCGCTGTCGTGCTACACCCCCGCCTTCATCGAAG AGGGCGGCGAGGCCGCCGAGGGCACCTACGTCTGGATGTTCTTCCTTCCC TTCGAGGAAGCCGACAGCAACGAGAACCTCGGCGCCTTCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126469:3..494-

>mRNA_M-pyrifera_M_contig126469.5335.1 ID=mRNA_M-pyrifera_M_contig126469.5335.1|Name=mRNA_M-pyrifera_M_contig126469.5335.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig126469:3..494- (Macrocystis pyrifera P11B4 male)
GGCGCGTCCTGCCCCTACGAGGGCGGTGAGCGTGGCTATGTCGCCGCCAC
CGGCGCCCAGGAATTCCTGGCCGAGTCGCTCGGTGTCGAATTCAACGGCA
TCGCCATCGTGCCCGCCGATCTGCCTTCGACCATCGCTTCGATGGTGCCG
ATCACCGCTGCGCAGGAACAGGCCGGGGTGACCTGGGACGGCATCTTCGG
TGCCTCGGGCGCGGCCACCCAGGCCGAGTTCGGCAAGTTCGTCGCCGCGA
TGAGCGACAACAACTCGAACTACGTCTACAACGGCTCCAACGATCAGGCG
ATGCTCAAGCTGAAGCGAGAAGCCGCGGTGCAGGGCATCGACGTCGACTC
GGTCACCTGGCTCTGCTCGCTGTCGTGCTACACCCCCGCCTTCATCGAAG
AGGGCGGCGAGGCCGCCGAGGGCACCTACGTCTGGATGTTCTTCCTTCCC
TTCGAGGAAGCCGACAGCAACGAGAACCTCGGCGCCTTCCTGGGCGCGTC
CTGCCCCTACGAGGGCGGTGAGCGTGGCTATGTCGCCGCCACCGGCGCCC
AGGAATTCCTGGCCGAGTCGCTCGGTGTCGAATTCAACGGCATCGCCATC
GTGCCCGCCGATCTGCCTTCGACCATCGCTTCGATGGTGCCGATCACCGC
TGCGCAGGAACAGGCCGGGGTGACCTGGGACGGCATCTTCGGTGCCTCGG
GCGCGGCCACCCAGGCCGAGTTCGGCAAGTTCGTCGCCGCGATGAGCGAC
AACAACTCGAACTACGTCTACAACGGCTCCAACGATCAGGCGATGCTCAA
GCTGAAGCGAGAAGCCGCGGTGCAGGGCATCGACGTCGACTCGGTCACCT
GGCTCTGCTCGCTGTCGTGCTACACCCCCGCCTTCATCGAAGAGGGCGGC
GAGGCCGCCGAGGGCACCTACGTCTGGATGTTCTTCCTTCCCTTCGAGGA
AGCCGACAGCAACGAGAACCTCGGCGCCTTCCTG
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