mRNA_M-pyrifera_M_contig126289.5308.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126289.5308.1
Unique NamemRNA_M-pyrifera_M_contig126289.5308.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A6G0X690_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X690_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.160e-13
Identity = 36/97 (37.11%), Postives = 51/97 (52.58%), Query Frame = 1
Query:   19 LGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLGD 309
            LG GK+  ARGFVR+W  D +  V SP+++L +TY+                      H D+YRL   T  D  ALG+ +V ST + ++EW +RL D
Sbjct:   51 LGCGKTCFARGFVRAWCQDEQLDVTSPTYLLINTYEPPVDTKRS-----------TLYHLDLYRLESVTATDAQALGLEDVFSTGTSIVEWPDRLQD 136          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A357V0S7_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A357V0S7_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 5.100e-12
Identity = 41/102 (40.20%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLG 306
            I L  GLG+GK+V ARGFVR+ +G     VPSP+F L   YD               G D    HFD+YRLN P   +   L I +  +    ++EW ERLG
Sbjct:   38 IALWGGLGMGKTVIARGFVRALLGPDE-EVPSPTFTLVQPYD---------------GPDATLYHFDLYRLNDP--EEAFELDIEDAFADGISLIEWPERLG 121          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A2M7GJ15_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Rhodospirillales bacterium CG15_BIG_FIL_POST_REV_8_21_14_020_66_15 TaxID=1974092 RepID=A0A2M7GJ15_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 3.970e-11
Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 1
Query:    1 IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLG 306
            I L  GLG+GK+V ARGF+R+  G     VPSP+F L   YD               G D    HFD+YRLN P   +   L I +  +    ++EW ERLG
Sbjct:   38 IALRGGLGMGKTVVARGFIRALAGGGE-DVPSPTFTLVQPYD---------------GADFTVYHFDLYRLNDP--EEAFELDIEDAFADGVSLIEWPERLG 121          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: UPI00190416A5 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI00190416A5)

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-10
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   19 LGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERL 303
            LG GK+  AR F+++  GD    VPSP+F L  TYDAT                +   H D+YRL+  +  +LD LG+  +L+T  +++EW ERL
Sbjct:   37 LGAGKTTLARSFIQALAGDE-IEVPSPTFTLVQTYDATR---------------IPVAHVDLYRLS--SAGELDELGLDELLTTHQLIVEWPERL 113          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A2D8YZN1_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A2D8YZN1_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 1.550e-10
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1
Query:    1 IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLG 306
            I L  GLG+GK+V ARG VR+ +G     VPSP+F L   Y+               G D    HFD+YRLN P   +   L I +  +    ++EW ERLG
Sbjct:   38 IALWGGLGMGKTVIARGIVRALLGTDE-EVPSPTFTLVQPYE---------------GPDYTVFHFDLYRLNDP--EEAYELDIEDAFAEGLSLIEWPERLG 121          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: UPI001648EFD9 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE n=3 Tax=unclassified Stappia TaxID=2629676 RepID=UPI001648EFD9)

HSP 1 Score: 63.9 bits (154), Expect = 1.070e-9
Identity = 36/94 (38.30%), Postives = 46/94 (48.94%), Query Frame = 1
Query:   19 LGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGER 300
            LG GKS  AR  +R+   D    VPSP+F L  TY  TA               +   HFD+YRL      +LD LG+  VL T + ++EW ER
Sbjct:   55 LGAGKSTFARALLRTLADDPALEVPSPTFTLVQTYPLTA---------------LPVAHFDLYRLEDE--EELDELGLDEVLETGAALIEWPER 131          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A511XQF7_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Acetobacter oeni TaxID=304077 RepID=A0A511XQF7_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 3.510e-9
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 1
Query:    1 IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLGD 309
            I+L   LG GKSV AR F+R    D    VPSP+F L  TYDAT                    HFD++RL+ P    L+ LG  +  +   V++EW ERL D
Sbjct:   31 ILLSGPLGAGKSVFARAFLRELCHDPALDVPSPTFTLVQTYDATISPVA---------------HFDLWRLDGPEA--LEELGWDDARN-GVVLVEWPERLED 115          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A6G6WUE6_9HYPH (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WUE6_9HYPH)

HSP 1 Score: 62.4 bits (150), Expect = 3.700e-9
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 1
Query:   19 LGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERL 303
            LG GK+  AR F+++  G+    VPSP+F L  TYDAT                +   H D+YRL   +  +LD LG+  +L +  +++EW ERL
Sbjct:   37 LGAGKTTLARSFIQALAGEE-IEVPSPTFTLVQTYDATR---------------IPVAHVDLYRL--ASAGELDELGLDELLKSHQLIVEWPERL 113          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A0F6YIR7_9DELT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=2 Tax=Sandaracinus amylolyticus TaxID=927083 RepID=A0A0F6YIR7_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 1.640e-8
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 1
Query:   19 LGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLGD 309
            LG GK+   R   R      R P+ SP+F L H  + T+G              V   H D+YRL+ P   +LDALG+P  ++ S  ++EWG R  +
Sbjct:   34 LGAGKTFLVRAIARGLRVPEREPITSPTFTLVH--EITSGR-------------VAITHADLYRLDDP--GELDALGLPEAITRSITIVEWGARFAE 113          
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Match: A0A2D9F0F3_9PROT (tRNA threonylcarbamoyladenosine biosynthesis protein TsaE n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9F0F3_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 2.550e-8
Identity = 38/102 (37.25%), Postives = 48/102 (47.06%), Query Frame = 1
Query:    1 IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAECGTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGERLG 306
            I L  GLG+GKSV ARG +R+        VPSP+F L   YDA                D    HFD+YRL  P   +   L I +  +    ++EW ERLG
Sbjct:   38 IALRGGLGMGKSVFARGLIRALTAPDE-DVPSPTFTLVQPYDAA---------------DFILYHFDLYRLEDP--EEAFELDIEDAFADGVSLIEWPERLG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126289.5308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6G0X690_9STRA2.160e-1337.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A357V0S7_9PROT5.100e-1240.20tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2M7GJ15_9PROT3.970e-1139.22tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI00190416A51.200e-1037.89tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A2D8YZN1_9PROT1.550e-1038.24tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
UPI001648EFD91.070e-938.30tRNA (adenosine(37)-N6)-threonylcarbamoyltransfera... [more]
A0A511XQF7_9PROT3.510e-938.83tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A6G6WUE6_9HYPH3.700e-935.79tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A0F6YIR7_9DELT1.640e-834.02tRNA threonylcarbamoyladenosine biosynthesis prote... [more]
A0A2D9F0F3_9PROT2.550e-837.25tRNA threonylcarbamoyladenosine biosynthesis prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126289contigM-pyrifera_M_contig126289:20..328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FR96
KEGG koko:K06925
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.Threonylcarbamoyl adenosine biosynthesis protein TsaE
EggNOG OGs2S3MQ@2759,COG0802@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815777.7492092-CDS-M-pyrifera_M_contig126289:19..3281622815777.7492092-CDS-M-pyrifera_M_contig126289:19..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126289 20..328 -
1692277564.736278-CDS-M-pyrifera_M_contig126289:19..3281692277564.736278-CDS-M-pyrifera_M_contig126289:19..328Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126289 20..328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126289.5308.1prot_M-pyrifera_M_contig126289.5308.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126289 20..328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126289.5308.1

>prot_M-pyrifera_M_contig126289.5308.1 ID=prot_M-pyrifera_M_contig126289.5308.1|Name=mRNA_M-pyrifera_M_contig126289.5308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
IVLCRGLGVGKSVCARGFVRSWIGDSRFPVPSPSFVLAHTYDATAGEAEC
GTRMLWGGEDVDCIHFDMYRLNPPTLNDLDALGIPNVLSTSSVVMEWGER
LGD
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mRNA from alignment at M-pyrifera_M_contig126289:20..328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126289.5308.1 ID=mRNA_M-pyrifera_M_contig126289.5308.1|Name=mRNA_M-pyrifera_M_contig126289.5308.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig126289:20..328- (Macrocystis pyrifera P11B4 male)
ATTGTGCTTTGCAGGGGATTGGGGGTGGGAAAAAGTGTATGCGCGAGGGG GTTTGTGCGATCGTGGATAGGTGACAGCAGATTTCCAGTTCCTTCTCCAT CTTTTGTGCTTGCTCACACTTACGATGCCACAGCAGGGGAAGCAGAGTGT GGAACTCGGATGCTATGGGGCGGGGAGGATGTAGATTGTATTCATTTTGA TATGTATCGCTTGAATCCCCCTACCCTGAATGATCTGGACGCATTAGGCA TCCCCAATGTCCTCTCTACAAGTAGTGTAGTGATGGAATGGGGTGAAAGA CTTGGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126289:20..328-

>mRNA_M-pyrifera_M_contig126289.5308.1 ID=mRNA_M-pyrifera_M_contig126289.5308.1|Name=mRNA_M-pyrifera_M_contig126289.5308.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig126289:20..328- (Macrocystis pyrifera P11B4 male)
ATTGTGCTTTGCAGGGGATTGGGGGTGGGAAAAAGTGTATGCGCGAGGGG
GTTTGTGCGATCGTGGATAGGTGACAGCAGATTTCCAGTTCCTTCTCCAT
CTTTTGTGCTTGCTCACACTTACGATGCCACAGCAGGGGAAGCAGAGTGT
GGAACTCGGATGCTATGGGGCGGGGAGGATGTAGATTGTATTCATTTTGA
TATGTATCGCTTGAATCCCCCTACCCTGAATGATCTGGACGCATTAGGCA
TCCCCAATGTCCTCTCTACAAGTAGTGTAGTGATGGAATGGGGTGAAAGA
CTTGGAGATATTGTGCTTTGCAGGGGATTGGGGGTGGGAAAAAGTGTATG
CGCGAGGGGGTTTGTGCGATCGTGGATAGGTGACAGCAGATTTCCAGTTC
CTTCTCCATCTTTTGTGCTTGCTCACACTTACGATGCCACAGCAGGGGAA
GCAGAGTGTGGAACTCGGATGCTATGGGGCGGGGAGGATGTAGATTGTAT
TCATTTTGATATGTATCGCTTGAATCCCCCTACCCTGAATGATCTGGACG
CATTAGGCATCCCCAATGTCCTCTCTACAAGTAGTGTAGTGATGGAATGG
GGTGAAAGACTTGGAGAT
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