mRNA_M-pyrifera_M_contig126048.5260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126048.5260.1
Unique NamemRNA_M-pyrifera_M_contig126048.5260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A7S0PDI2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PDI2_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 3.650e-25
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLHRR 267
            +LF+ERS+LSD++CFAAN R S L +E EWRVY  WW+ I+   K    +D ++YLR +P TC +R+ KR R+EE  V L YL  LH R
Sbjct:  186 ILFFERSVLSDKYCFAANCRESGLFEELEWRVYCDWWKFIMQEFKAL-RIDGLVYLRCAPATCHQRLHKRARDEEAGVPLSYLNDLHHR 273          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A6J0SQ01_9SAUR (deoxycytidine kinase-like n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SQ01_9SAUR)

HSP 1 Score: 101 bits (252), Expect = 1.930e-24
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA+N+  S  LDE EW +Y+ W   +L+  +   ELD IIYLR +PE C ER+ +RGREEE+ ++L+YLE LH
Sbjct:  126 VQFFERSVYSDRYVFASNSFESGDLDETEWAIYQDWHSWLLNQFESNLELDGIIYLRTTPEKCMERLKRRGREEEQDIQLEYLENLH 212          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A7K7YCG0_THRLU (DCK kinase (Fragment) n=1 Tax=Thryothorus ludovicianus TaxID=74200 RepID=A0A7K7YCG0_THRLU)

HSP 1 Score: 96.7 bits (239), Expect = 2.660e-24
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA+N   S  ++E EW +Y+ W   +L+  + + ELD +IYLR +P+ C ER+  RGREEE+ +EL+YLE LH
Sbjct:    2 VQFFERSVYSDRYVFASNLFESGNINETEWSIYQDWHTWLLNQFQSDIELDGMIYLRTTPQKCMERLQTRGREEEQGIELEYLENLH 88          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A5A8DUI2_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUI2_CAFRO)

HSP 1 Score: 103 bits (258), Expect = 3.070e-24
Identity = 46/89 (51.69%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLHRR 267
            +LF+ERS+LSD++CFAAN R S L +E EWRVY  WW+ I+   K    +D ++YLR +P TC +R+ KR R+EE  V L YL  LH R
Sbjct:  181 ILFFERSVLSDKYCFAANCRESGLFEELEWRVYCDWWKFIMQEFKAL-RIDGLVYLRCAPATCHQRLHKRARDEEAGVPLSYLNDLHHR 268          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: UPI0012AC1992 (deoxycytidine kinase-like n=1 Tax=Meleagris gallopavo TaxID=9103 RepID=UPI0012AC1992)

HSP 1 Score: 99.0 bits (245), Expect = 3.170e-24
Identity = 43/87 (49.43%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA+N   S  ++E EW +Y+ W   +L+  + E ELD +IYLR +P+ C ER+ KRGR+EEE ++L+YLE LH
Sbjct:   40 VQFFERSVYSDRYVFASNLFESGNINETEWAIYQDWHTWLLNQFQSEVELDGMIYLRTTPQKCMERLQKRGRKEEEGIDLEYLENLH 126          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A3B4B1C0_9GOBI (Zgc:110540 n=3 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4B1C0_9GOBI)

HSP 1 Score: 100 bits (248), Expect = 7.420e-24
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V FYERS+ SDRF FA+    S  L E EW VY+ W + ILD    +  LDAI+YLRA PE C +R+  RGREEE+ + L+YL+QLH
Sbjct:  119 VQFYERSVYSDRFVFASTLWESQSLTETEWSVYQDWHQWILDQFSPDLNLDAIVYLRAKPERCMQRLLHRGREEEQDIPLEYLQQLH 205          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: DCK2_CHICK (Deoxycytidine kinase 2 n=8 Tax=Galliformes TaxID=8976 RepID=DCK2_CHICK)

HSP 1 Score: 100 bits (248), Expect = 7.560e-24
Identity = 44/87 (50.57%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA+N   S  ++E EW +Y+ W   +L+  + E ELD IIYLR +P+ C ER+ KRGR+EEE ++L+YLE LH
Sbjct:  126 VQFFERSVYSDRYVFASNLFESGNINETEWAIYQDWHSWLLNQFQSEIELDGIIYLRTTPQKCMERLQKRGRKEEEGIDLEYLENLH 212          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: A0A6P4ZZM1_BRABE (deoxycytidine kinase-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZZM1_BRABE)

HSP 1 Score: 99.8 bits (247), Expect = 8.420e-24
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLHRR 267
            V+FYERS+ SDR+CFAAN  S    +E EW +Y  W   ++  M GE +LD IIYLRA PE C ER+  RGR EE  V L+YL+Q+H R
Sbjct:  115 VIFYERSVYSDRYCFAANCFSLGTFNETEWNIYCDWHSTMMAAM-GELKLDGIIYLRAEPEVCLERLQLRGRPEERPVSLEYLDQIHTR 202          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: UPI000EF70B79 (deoxycytidine kinase-like isoform X2 n=1 Tax=Athene cunicularia TaxID=194338 RepID=UPI000EF70B79)

HSP 1 Score: 97.8 bits (242), Expect = 8.970e-24
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA+N   S  ++E EW +Y+ W   +L+  + + ELD +IYLR +PE C ER+  RGREEE+ +EL+YLE LH
Sbjct:   40 VQFFERSVYSDRYVFASNLFESGNINETEWAIYQDWHTWLLNQFESDIELDGMIYLRTTPEKCMERLQTRGREEEQGIELEYLENLH 126          
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Match: UPI001CFC0CD5 (deoxycytidine kinase n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC0CD5)

HSP 1 Score: 99.4 bits (246), Expect = 1.470e-23
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:    1 VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGELDAIIYLRASPETCKERMTKRGREEEESVELDYLEQLH 261
            V F+ERS+ SDR+ FA++   S  ++E EW +Y+ W   +L+  +   ELD +IYLRA+PE CKER+  RGREEE+ +E+DYLE+LH
Sbjct:  124 VQFFERSVYSDRYIFASSLFESGDINETEWAIYQDWHAWLLEQFESRIELDGMIYLRATPEKCKERLHLRGREEEQGIEMDYLEKLH 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126048.5260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0PDI2_CAFRO3.650e-2551.69Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A6J0SQ01_9SAUR1.930e-2451.72deoxycytidine kinase-like n=1 Tax=Pogona vitticeps... [more]
A0A7K7YCG0_THRLU2.660e-2448.28DCK kinase (Fragment) n=1 Tax=Thryothorus ludovici... [more]
A0A5A8DUI2_CAFRO3.070e-2451.69Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
UPI0012AC19923.170e-2449.43deoxycytidine kinase-like n=1 Tax=Meleagris gallop... [more]
A0A3B4B1C0_9GOBI7.420e-2454.02Zgc:110540 n=3 Tax=Oxudercinae TaxID=497678 RepID=... [more]
DCK2_CHICK7.560e-2450.57Deoxycytidine kinase 2 n=8 Tax=Galliformes TaxID=8... [more]
A0A6P4ZZM1_BRABE8.420e-2453.93deoxycytidine kinase-like n=3 Tax=Branchiostoma Ta... [more]
UPI000EF70B798.970e-2449.43deoxycytidine kinase-like isoform X2 n=1 Tax=Athen... [more]
UPI001CFC0CD51.470e-2350.57deoxycytidine kinase n=1 Tax=Protopterus annectens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126048contigM-pyrifera_M_contig126048:244..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score97.1
Seed ortholog evalue4.5e-18
Seed eggNOG ortholog8010.XP_010869531.1
KEGG rclassRC00002,RC00017
KEGG koko:K00893
KEGG ReactionR00185,R01666
KEGG Pathwayko00230,ko00240,ko01100,map00230,map00240,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zgc 110540
EggNOG OGs38G0J@33154,3BMYY@33208,3CW87@33213,48CRT@7711,4952G@7742,4A08Z@7898,COG1428@1,KOG4235@2759
EC2.7.1.74
COG Functional cat.F
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.7124462-CDS-M-pyrifera_M_contig126048:243..5101622815775.7124462-CDS-M-pyrifera_M_contig126048:243..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126048 244..510 +
1692277563.8647165-CDS-M-pyrifera_M_contig126048:243..5101692277563.8647165-CDS-M-pyrifera_M_contig126048:243..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126048 244..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126048.5260.1prot_M-pyrifera_M_contig126048.5260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126048 244..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126048.5260.1

>prot_M-pyrifera_M_contig126048.5260.1 ID=prot_M-pyrifera_M_contig126048.5260.1|Name=mRNA_M-pyrifera_M_contig126048.5260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
VLFYERSILSDRFCFAANARSSALLDEAEWRVYKQWWELILDLMKGEGEL
DAIIYLRASPETCKERMTKRGREEEESVELDYLEQLHRR
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mRNA from alignment at M-pyrifera_M_contig126048:244..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126048.5260.1 ID=mRNA_M-pyrifera_M_contig126048.5260.1|Name=mRNA_M-pyrifera_M_contig126048.5260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig126048:244..510+ (Macrocystis pyrifera P11B4 male)
GTTTTGTTTTACGAGCGCAGCATTCTCTCCGATCGTTTTTGCTTCGCTGC CAATGCACGATCATCCGCACTTTTGGATGAAGCAGAATGGCGTGTGTACA AGCAATGGTGGGAATTGATTTTGGACTTGATGAAGGGTGAAGGCGAGCTA GACGCCATCATTTACCTTCGAGCAAGCCCAGAAACATGCAAAGAGCGCAT GACCAAGCGTGGCCGTGAAGAGGAAGAAAGTGTGGAACTTGACTACCTCG AACAGCTGCATCGTCGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126048:244..510+

>mRNA_M-pyrifera_M_contig126048.5260.1 ID=mRNA_M-pyrifera_M_contig126048.5260.1|Name=mRNA_M-pyrifera_M_contig126048.5260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig126048:244..510+ (Macrocystis pyrifera P11B4 male)
GTTTTGTTTTACGAGCGCAGCATTCTCTCCGATCGTTTTTGCTTCGCTGC
CAATGCACGATCATCCGCACTTTTGGATGAAGCAGAATGGCGTGTGTACA
AGCAATGGTGGGAATTGATTTTGGACTTGATGAAGGGTGAAGGCGAGCTA
GACGCCATCATTTACCTTCGAGCAAGCCCAGAAACATGCAAAGAGCGCAT
GACCAAGCGTGGCCGTGAAGAGGAAGAAAGTGTGGAACTTGACTACCTCG
AACAGCTGCATCGTCGTGTTTTGTTTTACGAGCGCAGCATTCTCTCCGAT
CGTTTTTGCTTCGCTGCCAATGCACGATCATCCGCACTTTTGGATGAAGC
AGAATGGCGTGTGTACAAGCAATGGTGGGAATTGATTTTGGACTTGATGA
AGGGTGAAGGCGAGCTAGACGCCATCATTTACCTTCGAGCAAGCCCAGAA
ACATGCAAAGAGCGCATGACCAAGCGTGGCCGTGAAGAGGAAGAAAGTGT
GGAACTTGACTACCTCGAACAGCTGCATCGTCGT
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