mRNA_M-pyrifera_M_contig126010.5249.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig126010.5249.1
Unique NamemRNA_M-pyrifera_M_contig126010.5249.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A3D5DG28_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG28_9GAMM)

HSP 1 Score: 184 bits (467), Expect = 5.420e-55
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            H IINNILVGARPRAATFNRAGT+AYATSEISGEVKKVD++SG I GRMPLADD+AKPKDVLLN DE+KLFVAGGRAN IFVLD +TLEIQ SIPVGKRVWGLALS
Sbjct:  174 HKIINNILVGARPRAATFNRAGTIAYATSEISGEVKKVDLSSGTITGRMPLADDRAKPKDVLLNVDESKLFVAGGRANCIFVLDAHTLEIQQSIPVGKRVWGLALS 279          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A2E0PXZ1_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PXZ1_9GAMM)

HSP 1 Score: 137 bits (345), Expect = 8.910e-37
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            +TI  NILVGARPRAATF ++G +AYAT+EISGEV K+D+ +G+I+ R    D+K+KPKDV+LN DE+ ++VA GRAN +  +D  TLEI TSIPVGKRVWGLA+S
Sbjct:  169 NTIEKNILVGARPRAATFTKSGDIAYATAEISGEVVKIDMNTGEILKRGSSGDNKSKPKDVVLNKDESVVYVAAGRANKVVAMDAQTLEIITSIPVGKRVWGLAIS 274          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A2E0Q0C2_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0Q0C2_9GAMM)

HSP 1 Score: 136 bits (343), Expect = 1.850e-36
Identity = 65/107 (60.75%), Postives = 86/107 (80.37%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALSA 321
            + I +NIL+G+RPRAA F ++G +AYAT+EISGEV KVD+ + KI+   PL D+KAKPKDV+L+ DE  ++VAGGRAN I V++ +TLEI   IPVGKRVWGLA+S+
Sbjct:  170 NVIESNILIGSRPRAAVFTKSGDIAYATAEISGEVVKVDIPNAKILKTAPLGDNKAKPKDVILSKDEKTIYVAGGRANKIIVMNSDTLEILKGIPVGKRVWGLAMSS 276          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A836TZ31_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836TZ31_9GAMM)

HSP 1 Score: 132 bits (332), Expect = 7.620e-35
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLAL 315
            +TI NNIL+G+RPRAATF+++G +AYAT+EISGEV KVD+ + KII      D K+KPKDV+L+ DE  ++VAGGRAN I V+D +TLEI   IPVGKR WGLA+
Sbjct:  169 NTIENNILIGSRPRAATFSQSGDIAYATAEISGEVVKVDMINAKIIKTGSTGDSKSKPKDVVLSKDEKVIYVAGGRANKIIVMDADTLEIIKGIPVGKRTWGLAM 273          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A353VUN2_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A353VUN2_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 3.050e-34
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            + I +NIL+G+RPRAA F ++G +AYAT+EISGEV KVD+   KI+    L D KAKPKDV+L  DE  ++VAGGRAN I V+D +TLEI   IPVGKRVWGLA+S
Sbjct:  169 NVIESNILIGSRPRAAVFTKSGDIAYATAEISGEVVKVDMNKAKILKTASLGDAKAKPKDVILAKDEKTIYVAGGRANKIIVMDADTLEIIKGIPVGKRVWGLAMS 274          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A849MLC4_9PROT (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MLC4_9PROT)

HSP 1 Score: 130 bits (328), Expect = 3.050e-34
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    7 IINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            I NNILVG+RPRAATF ++G +AYAT+EISGEV KVD+ + KI+      D K+KPKDVLL+ DE  ++VAGGRAN + V+D +TLEI   IPVGKRVWGLA++
Sbjct:  172 IENNILVGSRPRAATFTQSGDIAYATAEISGEVVKVDMVNAKILKIGNTGDSKSKPKDVLLSKDEKVVYVAGGRANKVLVMDADTLEIIKGIPVGKRVWGLAMT 275          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A661BVN0_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BVN0_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 4.680e-33
Identity = 58/106 (54.72%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            +TI +NILVG+RPRAA F     +AYAT+EI+GE+ K+D+ + KI+ R  L D K+KPKDV+L+ DE  ++VAGGR+N+++++D +TLE+   IPVGKRVWGLA++
Sbjct:  170 NTITDNILVGSRPRAAVFTNNSKIAYATAEITGEIVKIDMENAKILKRSQLEDPKSKPKDVILSKDEKHIYVAGGRSNSVWLMDADTLEVIKGIPVGKRVWGLAIT 275          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A482ZZX5_9GAMM (Uncharacterized conserved protein n=1 Tax=uncultured SUP05 cluster bacterium TaxID=655186 RepID=A0A482ZZX5_9GAMM)

HSP 1 Score: 124 bits (310), Expect = 1.690e-31
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLA 312
            +T+I+NILVG+RPRAA FNR   L YAT+EISGEV K+D     I+ R+ L D  +KPKD+LL+ DE  L+VAGGRAN I++++ +TLE+   I VGKRVWGLA
Sbjct:  179 NTVIDNILVGSRPRAAIFNRNNQLIYATTEISGEVIKIDAEQATILQRIQLKDPNSKPKDILLSKDEKFLYVAGGRANKIWLMNADTLEVIKGISVGKRVWGLA 282          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A523P5J0_9PROT (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P5J0_9PROT)

HSP 1 Score: 105 bits (263), Expect = 1.590e-24
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 1
Query:  136 IGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLAL 315
            IG+MPLADDKAKPKD+LLN DET LFVAGGRAN +FVLD NTLE+  SIPVGKRVWGLAL
Sbjct:  219 IGKMPLADDKAKPKDILLNKDETLLFVAGGRANRVFVLDANTLELYKSIPVGKRVWGLAL 278          
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Match: A0A1G0K0X5_9GAMM (PQQ-dependent catabolism-associated beta-propeller protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 TaxID=1798300 RepID=A0A1G0K0X5_9GAMM)

HSP 1 Score: 103 bits (256), Expect = 1.180e-23
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMPLADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRVWGLALS 318
            H I+ NIL                     EISGEVKKVD+ + KII    +AD+KAKPKDV+L+ DE  L+VAGGR++A+ VLD  TL+I+ +IPVGKRVWGLA S
Sbjct:  169 HDIVANILXXXXXXXXXXXXXXXXXXXXXEISGEVKKVDMRANKIIAVEKIADEKAKPKDVMLSADEKTLYVAGGRSDAVIVLDAATLKIKATIPVGKRVWGLARS 274          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig126010.5249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DG28_9GAMM5.420e-5587.74PQQ-dependent catabolism-associated beta-propeller... [more]
A0A2E0PXZ1_9GAMM8.910e-3763.21PQQ-dependent catabolism-associated beta-propeller... [more]
A0A2E0Q0C2_9GAMM1.850e-3660.75PQQ-dependent catabolism-associated beta-propeller... [more]
A0A836TZ31_9GAMM7.620e-3561.90PQQ-dependent catabolism-associated beta-propeller... [more]
A0A353VUN2_9GAMM3.050e-3461.32PQQ-dependent catabolism-associated beta-propeller... [more]
A0A849MLC4_9PROT3.050e-3462.50PQQ-dependent catabolism-associated beta-propeller... [more]
A0A661BVN0_9GAMM4.680e-3354.72PQQ-dependent catabolism-associated beta-propeller... [more]
A0A482ZZX5_9GAMM1.690e-3158.65Uncharacterized conserved protein n=1 Tax=uncultur... [more]
A0A523P5J0_9PROT1.590e-2483.33PQQ-dependent catabolism-associated beta-propeller... [more]
A0A1G0K0X5_9GAMM1.180e-2351.89PQQ-dependent catabolism-associated beta-propeller... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig126010contigM-pyrifera_M_contig126010:3..452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue2e-10
Seed eggNOG ortholog670307.HYPDE_31343
Preferred nameMA20_34510
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TIGRFAM 40-residue YVTN family beta-propeller repeat protein
EggNOG OGs1P862@1224,2TR6Z@28211,COG3391@1,COG3391@2
COG Functional cat.S
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size450
Cds size450
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815775.2767136-CDS-M-pyrifera_M_contig126010:2..4521622815775.2767136-CDS-M-pyrifera_M_contig126010:2..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126010 3..452 +
1692277563.6971204-CDS-M-pyrifera_M_contig126010:2..4521692277563.6971204-CDS-M-pyrifera_M_contig126010:2..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig126010 3..452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig126010.5249.1prot_M-pyrifera_M_contig126010.5249.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig126010 3..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig126010.5249.1

>prot_M-pyrifera_M_contig126010.5249.1 ID=prot_M-pyrifera_M_contig126010.5249.1|Name=mRNA_M-pyrifera_M_contig126010.5249.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=150bp
HTIINNILVGARPRAATFNRAGTLAYATSEISGEVKKVDVASGKIIGRMP
LADDKAKPKDVLLNNDETKLFVAGGRANAIFVLDPNTLEIQTSIPVGKRV
WGLALSADGSRLYTTDGVSNQVSVIDTASDEVVATVPVGKFPWGVAVYE*
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mRNA from alignment at M-pyrifera_M_contig126010:3..452+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig126010.5249.1 ID=mRNA_M-pyrifera_M_contig126010.5249.1|Name=mRNA_M-pyrifera_M_contig126010.5249.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig126010:3..452+ (Macrocystis pyrifera P11B4 male)
CACACCATCATCAACAACATTCTCGTTGGCGCCCGCCCGCGCGCGGCAAC GTTCAACCGCGCCGGCACACTCGCTTACGCAACCTCGGAGATCAGTGGCG AGGTCAAGAAAGTCGACGTGGCCAGTGGCAAAATCATCGGCCGGATGCCG CTCGCGGACGACAAGGCGAAACCCAAGGATGTGCTGCTGAACAACGACGA GACGAAACTGTTCGTCGCCGGCGGGCGCGCGAACGCGATTTTCGTGCTCG ATCCGAACACGCTCGAAATCCAGACTTCGATCCCTGTTGGCAAACGCGTA TGGGGGCTGGCGTTGTCGGCTGACGGGTCACGGCTCTACACGACCGACGG GGTGAGCAATCAGGTCAGTGTGATTGATACCGCAAGCGATGAGGTGGTCG CCACAGTGCCGGTCGGAAAGTTCCCGTGGGGCGTCGCCGTCTACGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig126010:3..452+

>mRNA_M-pyrifera_M_contig126010.5249.1 ID=mRNA_M-pyrifera_M_contig126010.5249.1|Name=mRNA_M-pyrifera_M_contig126010.5249.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=900bp|location=Sequence derived from alignment at M-pyrifera_M_contig126010:3..452+ (Macrocystis pyrifera P11B4 male)
CACACCATCATCAACAACATTCTCGTTGGCGCCCGCCCGCGCGCGGCAAC
GTTCAACCGCGCCGGCACACTCGCTTACGCAACCTCGGAGATCAGTGGCG
AGGTCAAGAAAGTCGACGTGGCCAGTGGCAAAATCATCGGCCGGATGCCG
CTCGCGGACGACAAGGCGAAACCCAAGGATGTGCTGCTGAACAACGACGA
GACGAAACTGTTCGTCGCCGGCGGGCGCGCGAACGCGATTTTCGTGCTCG
ATCCGAACACGCTCGAAATCCAGACTTCGATCCCTGTTGGCAAACGCGTA
TGGGGGCTGGCGTTGTCGGCTGACGGGTCACGGCTCTACACGACCGACGG
GGTGAGCAATCAGGTCAGTGTGATTGATACCGCAAGCGATGAGGTGGTCG
CCACAGTGCCGGTCGGAAAGTTCCCGTGGGGCGTCGCCGTCTACGAGTGA
CACACCATCATCAACAACATTCTCGTTGGCGCCCGCCCGCGCGCGGCAAC
GTTCAACCGCGCCGGCACACTCGCTTACGCAACCTCGGAGATCAGTGGCG
AGGTCAAGAAAGTCGACGTGGCCAGTGGCAAAATCATCGGCCGGATGCCG
CTCGCGGACGACAAGGCGAAACCCAAGGATGTGCTGCTGAACAACGACGA
GACGAAACTGTTCGTCGCCGGCGGGCGCGCGAACGCGATTTTCGTGCTCG
ATCCGAACACGCTCGAAATCCAGACTTCGATCCCTGTTGGCAAACGCGTA
TGGGGGCTGGCGTTGTCGGCTGACGGGTCACGGCTCTACACGACCGACGG
GGTGAGCAATCAGGTCAGTGTGATTGATACCGCAAGCGATGAGGTGGTCG
CCACAGTGCCGGTCGGAAAGTTCCCGTGGGGCGTCGCCGTCTACGAGTGA
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