mRNA_M-pyrifera_M_contig125917.5235.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125917.5235.1
Unique NamemRNA_M-pyrifera_M_contig125917.5235.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: E1Z439_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z439_CHLVA)

HSP 1 Score: 140 bits (354), Expect = 4.270e-38
Identity = 67/107 (62.62%), Postives = 78/107 (72.90%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            R RGALW + + DALSMPVHWYYD RAL  ++G I  Y+AP+E HP SIM  S+TGG GRGG GG++IG VI H K   WG    G+HYH GMAAGENTL + CARL
Sbjct:   12 RVRGALWGVYIADALSMPVHWYYDVRALQRDYGRITTYQAPKERHPGSIMSVSNTGGHGRGGQGGRIIGDVINHGKHDRWG--KSGVHYHEGMAAGENTLNALCARL 116          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A2P6VKI1_9CHLO (ADP-ribosylation crystallin J1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VKI1_9CHLO)

HSP 1 Score: 139 bits (350), Expect = 2.010e-37
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   22 AAVARARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            AA+ R RGALW + + DALSMPVHWYYD R L  +FG I  Y+AP++VHP SIM  SSTGG GRGG  G+++G +I H K   WG    G+HYH GMAAGENTL + CAR+
Sbjct:   10 AALDRVRGALWGVYIADALSMPVHWYYDIRRLQQDFGRITGYEAPKKVHPGSIMSVSSTGGHGRGGQSGRIVGDIINHGKHDRWG--KPGVHYHEGMAAGENTLNALCARV 118          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A0G4ID29_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4ID29_9ALVE)

HSP 1 Score: 138 bits (347), Expect = 4.790e-37
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            RARGALW + +GD L MPVHWYY+   +  +FG I +Y+AP++ HP+SIM  S+TGGGGRGG  G++IG VI H K  YWG RN   HYH+GM AGENTL ++CAR+
Sbjct:   13 RARGALWGIFIGDGLGMPVHWYYNPNDIVTDFGSIEKYEAPKKRHPSSIMSLSNTGGGGRGGQSGRIIGDVINHGKHVYWGDRN--THYHQGMQAGENTLNAQCARV 117          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A349EEN2_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349EEN2_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 8.300e-36
Identity = 61/107 (57.01%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            R RGALW M +GDAL+MPVHWYY+  AL  +FG IR+Y+AP+  HP+SIM  +STG  GRG   G+V+G VIL  K  YWG  N  IHYH+GM  G+NTL   C R+
Sbjct:   41 RIRGALWGMFVGDALAMPVHWYYNVAALQRDFGTIRDYQAPKNFHPSSIMSLASTGRAGRGSQEGEVVGSVILKGKKPYWGQPN--IHYHQGMRPGDNTLNLLCVRM 145          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A2P6TVM7_CHLSO (ADP-ribosylation crystallin J1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TVM7_CHLSO)

HSP 1 Score: 138 bits (348), Expect = 1.350e-35
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            R RGALW + + DALSMPVHWYYD RA+  ++G I +Y+AP+E HP SIM  S+TGG GRGG GG++IG VI H K   WG    G+HYH GMA GENTL ++CARL
Sbjct: 1103 RVRGALWGIYIADALSMPVHWYYDPRAIVRDYGRITKYEAPKEKHPGSIMSVSNTGGHGRGGQGGRIIGDVINHGKHDRWG--KPGVHYHEGMAPGENTLNAQCARL 1207          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A250XPV0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XPV0_9CHLO)

HSP 1 Score: 134 bits (338), Expect = 1.980e-35
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 1
Query:   22 AAVARARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            AA+ R RG LW + + DALSMPVHWYYDT  L  +FGYI +Y+AP+  HP SIM  S+TGG GRG   G++IG VI H K  +WG    G+HYH+GM AGENTL + C+R+
Sbjct:   60 AALDRLRGCLWGVFIADALSMPVHWYYDTNVLQRDFGYITDYQAPKVRHPGSIMSVSNTGGHGRGDQSGKIIGDVINHGKHPFWG--KPGVHYHQGMKAGENTLNALCSRV 168          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A8B5XB22_9GAMM (ADP-ribosylglycohydrolase family protein (Fragment) n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5XB22_9GAMM)

HSP 1 Score: 133 bits (335), Expect = 2.520e-35
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            R RGALW M +GDAL+MPVHWYYD  AL  +FG IR+Y+AP++ HP+SIM  +STG  GRG   G+V+G VILH K   WG  N   HYH+G+ AG+NTL   CAR+
Sbjct:   36 RVRGALWGMFVGDALAMPVHWYYDVAALQRDFGTIRDYQAPKDHHPSSIMTLASTGRAGRGSQEGEVVGSVILHGKKHLWGRPN--THYHQGLRAGDNTLNLLCARV 140          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A7J7QFQ3_9CHLO (ADP-ribosylglycohydrolase-domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7QFQ3_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 3.830e-35
Identity = 66/112 (58.93%), Postives = 80/112 (71.43%), Query Frame = 1
Query:   19 AAAVARARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            AA + R RGALW + + DALSMPVHWYY    L  +FG I +Y+AP+  HP+SIM  S+TGG GRGG  G++IG VI H K Q+WG  N   HYHRGMAAGENTL + CAR+
Sbjct:   61 AALLDRMRGALWGIFIADALSMPVHWYYSVTDLKRDFGEITDYQAPKARHPSSIMSLSNTGGHGRGGQAGRIIGDVINHGKHQFWGVPN--THYHRGMAAGENTLNAICARV 170          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A150GH16_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GH16_GONPE)

HSP 1 Score: 132 bits (333), Expect = 3.970e-35
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   19 AAAVARARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            AA + R RGALW + + DALSMPVHWYY+   +  +FG I  Y+AP+  HP+SIM  S+TGG GRGG  G++IG VI H K  +WG    G+HYH+GM AGENTL + CARL
Sbjct:    4 AAVLDRVRGALWGIFIADALSMPVHWYYNPNDIRRDFGVIETYQAPKARHPSSIMSVSNTGGHGRGGQSGRIIGDVINHGKHDFWG--KSGVHYHQGMKAGENTLNAICARL 113          
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Match: A0A7C6VZL4_9GAMM (ADP-ribosylglycohydrolase family protein n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A7C6VZL4_9GAMM)

HSP 1 Score: 131 bits (330), Expect = 1.120e-34
Identity = 62/107 (57.94%), Postives = 75/107 (70.09%), Query Frame = 1
Query:   34 RARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPREVHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGMAAGENTLTSRCARL 354
            R RGALW M +GDAL+MPVHWYYD  AL  +FG IR+Y+AP++ HP+SIM  +ST   GRG   G+V+G VIL  K  YWG  N   HYHRGM AG+NTL   C R+
Sbjct:    9 RVRGALWGMFVGDALAMPVHWYYDVAALHRDFGTIRDYQAPKDFHPSSIMAVASTSRAGRGSQDGEVVGGVILKGKKPYWGRPN--THYHRGMQAGDNTLNLLCVRV 113          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125917.5235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E1Z439_CHLVA4.270e-3862.62Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A2P6VKI1_9CHLO2.010e-3759.46ADP-ribosylation crystallin J1 n=1 Tax=Micractiniu... [more]
A0A0G4ID29_9ALVE4.790e-3758.88Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A349EEN2_9GAMM8.300e-3657.01Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A2P6TVM7_CHLSO1.350e-3560.75ADP-ribosylation crystallin J1 n=1 Tax=Chlorella s... [more]
A0A250XPV0_9CHLO1.980e-3556.76Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A8B5XB22_9GAMM2.520e-3557.94ADP-ribosylglycohydrolase family protein (Fragment... [more]
A0A7J7QFQ3_9CHLO3.830e-3558.93ADP-ribosylglycohydrolase-domain-containing protei... [more]
A0A150GH16_GONPE3.970e-3556.25Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7C6VZL4_9GAMM1.120e-3457.94ADP-ribosylglycohydrolase family protein n=1 Tax=X... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125917contigM-pyrifera_M_contig125917:2..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score141.4
Seed ortholog evalue2.7e-31
Seed eggNOG ortholog554065.XP_005851090.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ADP-ribosylglycohydrolase
EggNOG OGs29FGD@1,2RNN1@2759,34JZW@3041,37YZY@33090
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size354
Cds size342
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.702253-CDS-M-pyrifera_M_contig125917:1..3431622815774.702253-CDS-M-pyrifera_M_contig125917:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125917 2..343 -
1692277563.4294376-CDS-M-pyrifera_M_contig125917:1..3431692277563.4294376-CDS-M-pyrifera_M_contig125917:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125917 2..343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815774.7138953-UTR-M-pyrifera_M_contig125917:343..3551622815774.7138953-UTR-M-pyrifera_M_contig125917:343..355Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125917 344..355 -
1692277563.4420562-UTR-M-pyrifera_M_contig125917:343..3551692277563.4420562-UTR-M-pyrifera_M_contig125917:343..355Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125917 344..355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125917.5235.1prot_M-pyrifera_M_contig125917.5235.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125917 2..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125917.5235.1

>prot_M-pyrifera_M_contig125917.5235.1 ID=prot_M-pyrifera_M_contig125917.5235.1|Name=mRNA_M-pyrifera_M_contig125917.5235.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MAAAAVARARGALWAMLMGDALSMPVHWYYDTRALDDEFGYIREYKAPRE
VHPTSIMHCSSTGGGGRGGDGGQVIGKVILHDKAQYWGGRNRGIHYHRGM
AAGENTLTSRCARL
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mRNA from alignment at M-pyrifera_M_contig125917:2..355-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125917.5235.1 ID=mRNA_M-pyrifera_M_contig125917.5235.1|Name=mRNA_M-pyrifera_M_contig125917.5235.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig125917:2..355- (Macrocystis pyrifera P11B4 male)
GCGAGAGGATCGATGGCAGCGGCGGCGGTGGCAAGGGCGCGGGGAGCGCT GTGGGCTATGCTCATGGGCGATGCGCTGTCGATGCCCGTGCATTGGTACT ACGACACGAGAGCACTGGATGATGAGTTTGGGTACATCAGAGAGTACAAG GCGCCAAGGGAGGTGCACCCCACGTCCATCATGCACTGCAGCAGCACAGG AGGAGGCGGCAGAGGAGGAGACGGCGGCCAAGTGATTGGAAAGGTCATTC TCCATGACAAGGCACAGTACTGGGGCGGGAGAAACAGAGGGATTCACTAC CATAGAGGAATGGCAGCGGGAGAGAACACACTCACCTCTCGCTGTGCTCG TCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125917:2..355-

>mRNA_M-pyrifera_M_contig125917.5235.1 ID=mRNA_M-pyrifera_M_contig125917.5235.1|Name=mRNA_M-pyrifera_M_contig125917.5235.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig125917:2..355- (Macrocystis pyrifera P11B4 male)
ATGGCAGCGGCGGCGGTGGCAAGGGCGCGGGGAGCGCTGTGGGCTATGCT
CATGGGCGATGCGCTGTCGATGCCCGTGCATTGGTACTACGACACGAGAG
CACTGGATGATGAGTTTGGGTACATCAGAGAGTACAAGGCGCCAAGGGAG
GTGCACCCCACGTCCATCATGCACTGCAGCAGCACAGGAGGAGGCGGCAG
AGGAGGAGACGGCGGCCAAGTGATTGGAAAGGTCATTCTCCATGACAAGG
CACAGTACTGGGGCGGGAGAAACAGAGGGATTCACTACCATAGAGGAATG
GCAGCGGGAGAGAACACACTCACCTCTCGCTGTGCTCGTCTCATGGCAGC
GGCGGCGGTGGCAAGGGCGCGGGGAGCGCTGTGGGCTATGCTCATGGGCG
ATGCGCTGTCGATGCCCGTGCATTGGTACTACGACACGAGAGCACTGGAT
GATGAGTTTGGGTACATCAGAGAGTACAAGGCGCCAAGGGAGGTGCACCC
CACGTCCATCATGCACTGCAGCAGCACAGGAGGAGGCGGCAGAGGAGGAG
ACGGCGGCCAAGTGATTGGAAAGGTCATTCTCCATGACAAGGCACAGTAC
TGGGGCGGGAGAAACAGAGGGATTCACTACCATAGAGGAATGGCAGCGGG
AGAGAACACACTCACCTCTCGCTGTGCTCGTCTC
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