mRNA_M-pyrifera_M_contig125784.5215.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125784.5215.1
Unique NamemRNA_M-pyrifera_M_contig125784.5215.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A354V4Q0_9PROT (Amidohydro-rel domain-containing protein n=1 Tax=Acetobacteraceae bacterium TaxID=1909293 RepID=A0A354V4Q0_9PROT)

HSP 1 Score: 175 bits (444), Expect = 1.690e-51
Identity = 84/144 (58.33%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLERHEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  L+  W+AAE + L IF+HPHY LG + +AGYGHA LLALGF FETTAA+TRLILGG  +R   LR ++AH GG LP+LA RLDAC   D H+   LR   S YLR +YFD + Y A  +   + LVG ERI+FGTDHPF
Sbjct:  140 LDDPALDQVWAAAERHGLMIFVHPHYGLGNEALAGYGHATLLALGFPFETTAAITRLILGGAFDRFPGLRMMVAHAGGVLPYLAARLDACVAGDAHSPVRLRHEPSSYLRGLYFDAIGYQAATLAMLMSLVGVERIMFGTDHPF 283
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A6C1QXL0_9SPIO (Amidohydrolase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A6C1QXL0_9SPIO)

HSP 1 Score: 172 bits (435), Expect = 4.300e-50
Identity = 76/144 (52.78%), Postives = 99/144 (68.75%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLERHEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LD   L+P W A +   L +F+HPHYT+G +W+ G+GHAP LALGF FETTAA  RLIL G+L+R  +LR +LAH GGTLP+LAGRLD CT VD ++ R +++   EYLRM Y+D V Y    ++  +     + I FGTDHPF
Sbjct:  153 LDSPDLDPVWDAIQRNQLWVFLHPHYTVGYEWLTGFGHAPALALGFPFETTAAAVRLILSGILDRFPDLRIMLAHGGGTLPYLAGRLDTCTSVDANSRRTMQRSIPEYLRMFYYDAVVYDPDVLKLTVATASAQHIAFGTDHPF 296
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A2P4X8C9_9STRA (2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8C9_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.490e-47
Identity = 80/145 (55.17%), Postives = 105/145 (72.41%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+ A +   L IF+HPHY +G +  A YGHA  LALGFTFETT AV++L+L G+L++  + LR +LAH+GGTLPFLAGRLD+C   D   A++L+   S YL+  Y+D VAYH PA+QC +D VG ++IVFGTDHPF
Sbjct:  184 LDDPEMLEFYRAIDRAGLTIFLHPHYGVGNEHYAEYGHALFLALGFTFETTVAVSKLVLSGLLDQVPDTLRLLLAHSGGTLPFLAGRLDSCVEHDAAIAQNLQHAPSVYLKRFYYDAVAYHEPALQCLIDFVGSDKIVFGTDHPF 328
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A6A3YAY0_9STRA (Amidohydro-rel domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YAY0_9STRA)

HSP 1 Score: 166 bits (421), Expect = 1.630e-47
Identity = 81/145 (55.86%), Postives = 104/145 (71.72%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+ A +   L IF+HPHY LG +    YGHA  LALGFTFETTAAV++L+L G+L++  + LR +LAH+GGTLPFLAGRLD+C   D   A++L+   S YL+  Y+D VAYH PA+QC +D VG  +IVFGTDHPF
Sbjct:  184 LDDPDMLDFYRAVDRAGLAIFLHPHYGLGNEHYGKYGHALFLALGFTFETTAAVSQLVLSGLLDQVPDTLRLLLAHSGGTLPFLAGRLDSCVEHDAAIAQNLQHAPSVYLKRFYYDAVAYHEPALQCLIDFVGSHKIVFGTDHPF 328
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A5D6XM35_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM35_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.090e-47
Identity = 78/144 (54.17%), Postives = 102/144 (70.83%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLERHEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+   E   L IF+HPHY +G +    YGHA  LALGFTFETT AV++L+L G+L+   +L+ +LAH+GGTLPFLAGRLD+C   D   A  L+ P S YL+  Y+D +AYHAPA+QC LD VG +++VFGTD+PF
Sbjct:  182 LDDPDMLAFYQTVESLGLTIFLHPHYGVGNEHYHQYGHALFLALGFTFETTVAVSQLVLSGMLDVVPDLKLLLAHSGGTLPFLAGRLDSCVAHDPAVASRLQHPPSCYLQRFYYDAIAYHAPALQCLLDFVGADKVVFGTDNPF 325
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: W2R027_PHYPN (Amidohydro-rel domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R027_PHYPN)

HSP 1 Score: 164 bits (415), Expect = 1.110e-46
Identity = 79/145 (54.48%), Postives = 103/145 (71.03%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+ A +   L IF+HPHY +G +    YGHA  LALGFTFETT AV++L+L G+L++  + LR +LAH+GGTLPFLAGRLD+C   D   A+ L+   S YL+  Y+D VAYH PA+QC +D VG ++IVFGTDHPF
Sbjct:  184 LDDPEMLEFYRAVDRAGLTIFLHPHYGVGNEHYGKYGHALFLALGFTFETTVAVSQLVLSGLLDKVPDTLRLLLAHSGGTLPFLAGRLDSCVEHDAATAQKLKHAPSVYLKRFYYDAVAYHEPALQCLIDFVGWDKIVFGTDHPF 328
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A225VEN5_9STRA (2-amino-3-carboxymuconate-6-semialdehyde decarboxylase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VEN5_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.320e-46
Identity = 79/145 (54.48%), Postives = 102/145 (70.34%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+   +   L IF+HPHY +G +  A YGHA  LALGFTFETT AV+RL+L G+L++  + LR +LAH+GG LPFLAGRLD+C   D   A+ L+   S YL+  Y+D VAYH PA+QC +D VG ++IVFGTDHPF
Sbjct:  188 LDDPEMLEFYREIDRARLTIFLHPHYGVGNEHYAEYGHALFLALGFTFETTVAVSRLVLSGLLDQVPDTLRLLLAHSGGALPFLAGRLDSCVEHDAAIAQKLQHLPSVYLKRFYYDAVAYHEPALQCLIDFVGSDKIVFGTDHPF 332
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BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: H3G672_PHYRM (Amidohydro-rel domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G672_PHYRM)

HSP 1 Score: 160 bits (404), Expect = 1.040e-45
Identity = 77/145 (53.10%), Postives = 102/145 (70.34%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+   +   L IF+HPHY +G +    YGHA  LALGFTFETT AV++L+L G+L++  + LR +LAH+GG LPFLAGRLD+C   D   A++L+   S YL+  Y+D VAYH PA+QC +D VG ++IVFGTDHPF
Sbjct:  168 LDDPDMLEFYREMDRAGLTIFLHPHYGVGNEHYGKYGHALFLALGFTFETTVAVSQLVLSGLLDQVPDTLRLLLAHSGGALPFLAGRLDSCVDHDAAVAQNLQHAPSVYLKRFYYDAVAYHEPALQCLIDFVGSDKIVFGTDHPF 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: K3X1G0_GLOUD (Amidohydro-rel domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1G0_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 1.310e-45
Identity = 76/144 (52.78%), Postives = 101/144 (70.14%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLERHEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+   ++  L IF+HPHY +G +    YGHA  LALGFTFETT AV++LIL G+L++   L+ +LAH+GGTLPFLAGRLD+C   D   +  L+   S YL+  Y+D +AYH PA+QC +D VG +RIVFGTD+PF
Sbjct:  191 LDDPAMLGFYQTVDQLGLTIFLHPHYGVGNEHYHNYGHALFLALGFTFETTVAVSQLILSGMLDQVPTLKLLLAHSGGTLPFLAGRLDSCVAHDLAISTKLQHAPSHYLKGFYYDAIAYHTPALQCLIDFVGSDRIVFGTDNPF 334
[Close]
BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Match: A0A3R7G9S3_9STRA (Amidohydro-rel domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G9S3_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.010e-45
Identity = 78/145 (53.79%), Postives = 101/145 (69.66%), Query Frame = 1 
Query:    1 LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFETTAAVTRLILGGVLER-HEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARHLRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF 432
            LDD  +  F+   +   L IF+HPHY +G +    YGHA  LALGFTFETT AV++L+L G+L++  + LR +LAH+GGTLPFLAGRLD+C   D   A  L+   S YL+  Y+D VAYH PA+QC +D VG ++IVFGTDHPF
Sbjct:  189 LDDPEMLEFYREMDRAGLTIFLHPHYGVGNEHYGKYGHALFLALGFTFETTVAVSQLVLSGLLDQVPDTLRLLLAHSGGTLPFLAGRLDSCVAHDAAIAERLQHAPSVYLQRFYYDAVAYHEPALQCLIDFVGADKIVFGTDHPF 333
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125784.5215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A354V4Q0_9PROT1.690e-5158.33Amidohydro-rel domain-containing protein n=1 Tax=A... [more]
A0A6C1QXL0_9SPIO4.300e-5052.78Amidohydrolase n=1 Tax=Spirochaetaceae bacterium T... [more]
A0A2P4X8C9_9STRA1.490e-4755.172-amino-3-carboxymuconate-6-semialdehyde decarboxy... [more]
A0A6A3YAY0_9STRA1.630e-4755.86Amidohydro-rel domain-containing protein n=5 Tax=P... [more]
A0A5D6XM35_9STRA3.090e-4754.17Amidohydro-rel domain-containing protein n=1 Tax=P... [more]
W2R027_PHYPN1.110e-4654.48Amidohydro-rel domain-containing protein n=14 Tax=... [more]
A0A225VEN5_9STRA3.320e-4654.482-amino-3-carboxymuconate-6-semialdehyde decarboxy... [more]
H3G672_PHYRM1.040e-4553.10Amidohydro-rel domain-containing protein n=1 Tax=P... [more]
K3X1G0_GLOUD1.310e-4552.78Amidohydro-rel domain-containing protein n=1 Tax=G... [more]
A0A3R7G9S3_9STRA2.010e-4553.79Amidohydro-rel domain-containing protein n=3 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125784contigM-pyrifera_M_contig125784:10..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue2.3e-40
Seed eggNOG ortholog115417.EPrPW00000021959
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2-amino-3-carboxymuconate-6-semialdehyde decarboxylase. Source PGD
EggNOG OGs1MEGE@121069,COG2159@1,KOG4245@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815773.540102-CDS-M-pyrifera_M_contig125784:9..4411622815773.540102-CDS-M-pyrifera_M_contig125784:9..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125784 10..441 +
1692277562.7684703-CDS-M-pyrifera_M_contig125784:9..4411692277562.7684703-CDS-M-pyrifera_M_contig125784:9..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125784 10..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125784.5215.1prot_M-pyrifera_M_contig125784.5215.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125784 10..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125784.5215.1

>prot_M-pyrifera_M_contig125784.5215.1 ID=prot_M-pyrifera_M_contig125784.5215.1|Name=mRNA_M-pyrifera_M_contig125784.5215.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
LDDEWLEPFWSAAEEYHLPIFIHPHYTLGADWMAGYGHAPLLALGFTFET
TAAVTRLILGGVLERHEELRFVLAHTGGTLPFLAGRLDACTRVDEHAARH
LRKPFSEYLRMMYFDGVAYHAPAVQCALDLVGPERIVFGTDHPF
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mRNA from alignment at M-pyrifera_M_contig125784:10..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125784.5215.1 ID=mRNA_M-pyrifera_M_contig125784.5215.1|Name=mRNA_M-pyrifera_M_contig125784.5215.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig125784:10..441+ (Macrocystis pyrifera P11B4 male)
CTCGATGACGAATGGCTTGAACCGTTTTGGTCCGCAGCCGAGGAATACCA
TCTGCCGATCTTCATCCACCCGCACTATACACTGGGGGCGGACTGGATGG
CGGGGTACGGGCATGCGCCTTTGCTGGCACTGGGATTCACTTTTGAGACG
ACCGCTGCTGTGACTCGTCTGATCCTTGGTGGCGTGTTGGAGCGTCACGA
AGAGCTCCGCTTTGTCCTTGCGCACACGGGAGGAACGTTGCCATTCTTGG
CGGGCCGCCTGGATGCATGTACACGAGTGGACGAGCACGCAGCTCGTCAC
TTGCGGAAACCATTCAGCGAGTATTTGCGGATGATGTACTTCGACGGTGT
GGCCTACCACGCACCTGCCGTGCAATGCGCTCTGGACTTGGTTGGTCCGG
AGCGGATTGTGTTTGGAACAGACCACCCGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125784:10..441+

>mRNA_M-pyrifera_M_contig125784.5215.1 ID=mRNA_M-pyrifera_M_contig125784.5215.1|Name=mRNA_M-pyrifera_M_contig125784.5215.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig125784:10..441+ (Macrocystis pyrifera P11B4 male)
CTCGATGACGAATGGCTTGAACCGTTTTGGTCCGCAGCCGAGGAATACCA
TCTGCCGATCTTCATCCACCCGCACTATACACTGGGGGCGGACTGGATGG
CGGGGTACGGGCATGCGCCTTTGCTGGCACTGGGATTCACTTTTGAGACG
ACCGCTGCTGTGACTCGTCTGATCCTTGGTGGCGTGTTGGAGCGTCACGA
AGAGCTCCGCTTTGTCCTTGCGCACACGGGAGGAACGTTGCCATTCTTGG
CGGGCCGCCTGGATGCATGTACACGAGTGGACGAGCACGCAGCTCGTCAC
TTGCGGAAACCATTCAGCGAGTATTTGCGGATGATGTACTTCGACGGTGT
GGCCTACCACGCACCTGCCGTGCAATGCGCTCTGGACTTGGTTGGTCCGG
AGCGGATTGTGTTTGGAACAGACCACCCGTTTCTCGATGACGAATGGCTT
GAACCGTTTTGGTCCGCAGCCGAGGAATACCATCTGCCGATCTTCATCCA
CCCGCACTATACACTGGGGGCGGACTGGATGGCGGGGTACGGGCATGCGC
CTTTGCTGGCACTGGGATTCACTTTTGAGACGACCGCTGCTGTGACTCGT
CTGATCCTTGGTGGCGTGTTGGAGCGTCACGAAGAGCTCCGCTTTGTCCT
TGCGCACACGGGAGGAACGTTGCCATTCTTGGCGGGCCGCCTGGATGCAT
GTACACGAGTGGACGAGCACGCAGCTCGTCACTTGCGGAAACCATTCAGC
GAGTATTTGCGGATGATGTACTTCGACGGTGTGGCCTACCACGCACCTGC
CGTGCAATGCGCTCTGGACTTGGTTGGTCCGGAGCGGATTGTGTTTGGAA
CAGACCACCCGTTT
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