mRNA_M-pyrifera_M_contig125706.5195.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125706.5195.1
Unique NamemRNA_M-pyrifera_M_contig125706.5195.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: A0A152A377_9MYCE (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A377_9MYCE)

HSP 1 Score: 120 bits (301), Expect = 3.270e-29
Identity = 62/123 (50.41%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQ-LANVLRVWNLDKDDKSGRPLCLKAIPI 366
            M  W+RF FFDK ++K   E  +++  P  Q+LS+TC TSGRG LIIGD  G IY V R+F   +FQAY +   LL QLK  N + S+G DD +   A+VL+VWNLDK DK+  PLC++AI +
Sbjct:    1 MNNWKRFTFFDKEIVK---ESVKDKDEPSIQKLSITCTTSGRGRLIIGDQEGFIYFVDREFRNTSFQAYQQNVLLLHQLKERNFLCSVGYDDKSYGQASVLKVWNLDKTDKNDNPLCVRAIKL 120          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: UPI000644B715 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644B715)

HSP 1 Score: 110 bits (274), Expect = 1.430e-25
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLCLKAIPI 366
            M QWR+F FFDK L+K   EG Q  P+ + Q+LS++C TSGRG LIIGD+ G I    R+F  ++F AY  T     QLK  N ++++G D+    + +L++WNLDK DK+  PLC+++I I
Sbjct:    1 MLQWRKFPFFDKELVKD--EGTQS-PNSVIQKLSISCITSGRGRLIIGDSEGFINFFDREFHLSSFHAYQETVSFAHQLKERNFLITIGFDESGT-SPLLKIWNLDKHDKNEVPLCVRSIKI 118          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: A0A7S4MLG9_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MLG9_9EUKA)

HSP 1 Score: 109 bits (273), Expect = 1.680e-25
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLCLKAI 360
            MF  +RFQFF   LI    +G  +EP PLF++LS+T   SG G LI GD  G + LV RDF A AFQA+  T + +Q LK    +++LGA+D+A L + +++W+++K+++SG P+CLK I
Sbjct:    7 MFHSKRFQFFQSKLITAD-DGNPDEPLPLFKELSITSSASGHGYLIFGDDQGFVNLVQRDFTAKAFQAHKSTVQSIQHLKGRPVLITLGAEDEA-LPHTIKLWDMEKEERSGDPICLKTI 124          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: A0A8J4PRN4_9MYCE (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PRN4_9MYCE)

HSP 1 Score: 109 bits (273), Expect = 1.950e-25
Identity = 55/122 (45.08%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLCLKAIPI 366
            M  W+RF FFDK L+K T   Q++E     Q+LS+TC TSGRG L+IGD  G I  V R++  ++FQAY ++  L+ QLK  N + ++G D+    A +L++WNLDK DK+  P+C++AI +
Sbjct:    1 MNNWKRFTFFDKELVKET---QKDENITTLQKLSITCTTSGRGILVIGDGEGFINFVDREYRISSFQAYQQSVTLIHQLKERNFLTTIGHDEMG--AAILKIWNLDKTDKNDIPICVRAIKL 117          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: VPS11_DICDI (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=VPS11_DICDI)

HSP 1 Score: 106 bits (264), Expect = 3.200e-24
Identity = 57/122 (46.72%), Postives = 84/122 (68.85%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLCLKAIPI 366
            M  W+RF FFD   I+  K+ ++E+   L Q+LS+TC TSGRG+LIIGDA G I  V R+F  ++FQAY ++  L+ QLK  N + S+G DD    A +L++WNLDK DK+ +P+C+++I +
Sbjct:    1 MNNWKRFTFFD---IETVKQVEKEDGSSL-QKLSITCTTSGRGSLIIGDAEGFINFVDREFGISSFQAYQQSVSLIYQLKERNFLSSVGHDDIGGAA-ILKIWNLDKTDKNEQPICVRSIKL 117          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: D3BRB4_POLPP (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BRB4_POLPP)

HSP 1 Score: 105 bits (262), Expect = 5.950e-24
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFE-ANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLAN-VLRVWNLDKDDKSGRPLCLKAIPI 366
            M QW++F FFDK L+K  +EG Q  P+ + Q+L ++C TSGRG LIIGD  G I    R+F  +++F AYN     L QLK  N ++S+G D+    AN +L++WNLDK DK+  PLC++AI I
Sbjct:    1 MIQWKKFPFFDKELVK--EEGSQN-PNSVIQKLPISCTTSGRGILIIGDTEGFINFFDREFRLSSSFHAYNEMVNQLYQLKERNFLISIGHDEPG--ANPILKIWNLDKMDKNDVPLCVRAIKI 119          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: F0ZDJ5_DICPU (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZDJ5_DICPU)

HSP 1 Score: 104 bits (260), Expect = 1.110e-23
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLCLKAI 360
            M  W++F FFD   +K T+   Q       Q+LS+TC TSGRG+LIIGDA G I  V R+F  ++FQAY ++   + QLK  N + S+G DD    A +L++WNLDK DK+  P+C+++I
Sbjct:    1 MNNWKKFTFFDLEQVKQTESDGQS-----LQKLSITCTTSGRGSLIIGDAEGFINFVDREFGISSFQAYQQSVTFIYQLKERNFLSSIGHDDTG--AAILKIWNLDKTDKNDIPICVRSI 113          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: UPI00109BC48B (vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BC48B)

HSP 1 Score: 103 bits (257), Expect = 2.800e-23
Identity = 54/124 (43.55%), Postives = 77/124 (62.10%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLC---LKAIP 363
            + QWRRF FFDK  +K  +  Q   P+   + + VT C+SGRG +I GD SG I+ V RD   ++F+A+      L Q+K  N +VS+G +D+  +  ++RVWNLDK DK G P+C   L+AIP
Sbjct:    3 LLQWRRFNFFDKEFLKDXETNQ---PYERLKGIEVTACSSGRGQMIFGDKSGMIHFVDRDLRLSSFKAFEINVSHLYQMKQHNILVSIG-EDEVGINPLVRVWNLDKMDKLGNPICCQMLRAIP 122          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: A0A6P8IS55_ACTTE (Vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IS55_ACTTE)

HSP 1 Score: 101 bits (252), Expect = 1.320e-22
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLC---LKAIP 363
            + QWRRF FFDK  +K  +  Q   P+   + ++++ C+SGRG +I GD SG I+ + RD + ++F+A+      L QLK  N +VS+G +D+  +  ++RVWNLDK DK G P+C   L+AIP
Sbjct:    3 LLQWRRFIFFDKEFLKDHETNQ---PYERLKDINISACSSGRGQMIFGDNSGSIHFLDRDLQLSSFKAFEIKASHLYQLKQHNILVSVG-EDEVGINPIVRVWNLDKTDKLGNPVCCQMLRAIP 122          
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Match: UPI000719B11C (vacuolar protein sorting-associated protein 11 homolog n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B11C)

HSP 1 Score: 101 bits (251), Expect = 1.810e-22
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    7 QWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLS---VTCCTSGRGNLIIGDASGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVLRVWNLDKDDKSGRPLC---LKAIP 363
            QWRRF FFDK L+K +   QQ      F QL    ++CC+SGRG +IIGD SG I+ V R F  +  +A+   T  L QLK  N +VS+G +D+  +  +++VWN+DK D++G P+C   ++AIP
Sbjct:    5 QWRRFNFFDKELVKVSDTEQQ------FDQLKDYDISCCSSGRGQIIIGDFSGSIHFVDRQFHVHTLKAFELRTTHLYQLKQHNILVSIG-EDEVGINPLVKVWNMDKMDRAGNPMCTRIVRAIP 122          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125706.5195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A152A377_9MYCE3.270e-2950.41Vacuolar protein sorting-associated protein 11 hom... [more]
UPI000644B7151.430e-2545.90hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S4MLG9_9EUKA1.680e-2545.83Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A8J4PRN4_9MYCE1.950e-2545.08Vacuolar protein sorting-associated protein 11 hom... [more]
VPS11_DICDI3.200e-2446.72Vacuolar protein sorting-associated protein 11 hom... [more]
D3BRB4_POLPP5.950e-2447.58Vacuolar protein sorting-associated protein 11 hom... [more]
F0ZDJ5_DICPU1.110e-2345.00Vacuolar protein sorting-associated protein 11 hom... [more]
UPI00109BC48B2.800e-2343.55vacuolar protein sorting-associated protein 11 hom... [more]
A0A6P8IS55_ACTTE1.320e-2241.94Vacuolar protein sorting-associated protein 11 hom... [more]
UPI000719B11C1.810e-2244.00vacuolar protein sorting-associated protein 11 hom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125706contigM-pyrifera_M_contig125706:128..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog44689.DDB0234135
Preferred nameVPS11
KEGG koko:K20179
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000323,GO:0000325,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005856,GO:0005884,GO:0006810,GO:0006887,GO:0006904,GO:0006906,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0008150,GO:0008333,GO:0009705,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019904,GO:0019905,GO:0022406,GO:0030139,GO:0030674,GO:0030897,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031338,GO:0031410,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032940,GO:0032991,GO:0033043,GO:0033263,GO:0034058,GO:0035542,GO:0042144,GO:0042176,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046903,GO:0046907,GO:0048278,GO:0048284,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051640,GO:0051641,GO:0051649,GO:0060090,GO:0060255,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0071840,GO:0080090,GO:0080171,GO:0090174,GO:0097576,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0099023,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140029,GO:0140056,GO:1901998,GO:1902115,GO:1903362,GO:1903364,GO:1903649,GO:1903651,GO:2000641,GO:2000643
EggNOG free text desc.Ring finger
EggNOG OGs3X9HK@554915,KOG2114@1,KOG2114@2759
COG Functional cat.U
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.6913044-CDS-M-pyrifera_M_contig125706:127..4931622815772.6913044-CDS-M-pyrifera_M_contig125706:127..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125706 128..493 +
1692277562.419578-CDS-M-pyrifera_M_contig125706:127..4931692277562.419578-CDS-M-pyrifera_M_contig125706:127..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125706 128..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125706.5195.1prot_M-pyrifera_M_contig125706.5195.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125706 128..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125706.5195.1

>prot_M-pyrifera_M_contig125706.5195.1 ID=prot_M-pyrifera_M_contig125706.5195.1|Name=mRNA_M-pyrifera_M_contig125706.5195.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
MFQWRRFQFFDKTLIKGTKEGQQEEPHPLFQQLSVTCCTSGRGNLIIGDA
SGCIYLVPRDFEANAFQAYNRTTRLLQQLKNVNQVVSLGADDDAQLANVL
RVWNLDKDDKSGRPLCLKAIPI
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mRNA from alignment at M-pyrifera_M_contig125706:128..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125706.5195.1 ID=mRNA_M-pyrifera_M_contig125706.5195.1|Name=mRNA_M-pyrifera_M_contig125706.5195.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig125706:128..493+ (Macrocystis pyrifera P11B4 male)
ATGTTCCAATGGCGGCGGTTCCAGTTCTTCGACAAGACGCTCATCAAGGG CACGAAGGAAGGCCAGCAGGAGGAGCCGCACCCGCTCTTCCAGCAGCTGT CGGTGACGTGCTGCACATCGGGGCGCGGCAACCTCATCATCGGCGACGCC TCGGGCTGCATCTACCTCGTGCCACGCGACTTTGAGGCAAATGCCTTCCA GGCCTACAACCGCACCACGCGCCTTCTGCAGCAGCTGAAGAACGTGAACC AGGTGGTGAGCTTGGGCGCGGATGATGACGCGCAGCTTGCGAATGTGCTG CGTGTGTGGAACCTCGACAAGGACGACAAGAGCGGCCGTCCCCTCTGCCT CAAGGCGATTCCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125706:128..493+

>mRNA_M-pyrifera_M_contig125706.5195.1 ID=mRNA_M-pyrifera_M_contig125706.5195.1|Name=mRNA_M-pyrifera_M_contig125706.5195.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig125706:128..493+ (Macrocystis pyrifera P11B4 male)
ATGTTCCAATGGCGGCGGTTCCAGTTCTTCGACAAGACGCTCATCAAGGG
CACGAAGGAAGGCCAGCAGGAGGAGCCGCACCCGCTCTTCCAGCAGCTGT
CGGTGACGTGCTGCACATCGGGGCGCGGCAACCTCATCATCGGCGACGCC
TCGGGCTGCATCTACCTCGTGCCACGCGACTTTGAGGCAAATGCCTTCCA
GGCCTACAACCGCACCACGCGCCTTCTGCAGCAGCTGAAGAACGTGAACC
AGGTGGTGAGCTTGGGCGCGGATGATGACGCGCAGCTTGCGAATGTGCTG
CGTGTGTGGAACCTCGACAAGGACGACAAGAGCGGCCGTCCCCTCTGCCT
CAAGGCGATTCCCATCATGTTCCAATGGCGGCGGTTCCAGTTCTTCGACA
AGACGCTCATCAAGGGCACGAAGGAAGGCCAGCAGGAGGAGCCGCACCCG
CTCTTCCAGCAGCTGTCGGTGACGTGCTGCACATCGGGGCGCGGCAACCT
CATCATCGGCGACGCCTCGGGCTGCATCTACCTCGTGCCACGCGACTTTG
AGGCAAATGCCTTCCAGGCCTACAACCGCACCACGCGCCTTCTGCAGCAG
CTGAAGAACGTGAACCAGGTGGTGAGCTTGGGCGCGGATGATGACGCGCA
GCTTGCGAATGTGCTGCGTGTGTGGAACCTCGACAAGGACGACAAGAGCG
GCCGTCCCCTCTGCCTCAAGGCGATTCCCATC
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