mRNA_M-pyrifera_M_contig125704.5194.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125704.5194.1
Unique NamemRNA_M-pyrifera_M_contig125704.5194.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A0K8RE24_IXORI (Putative flap structure-specific endonuclease 1 n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A0K8RE24_IXORI)

HSP 1 Score: 80.1 bits (196), Expect = 5.250e-18
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL ++IADNAP AI E  + +YFGR IAIDASM LY FL+A+RQ+N   MLT++ GETT
Sbjct:    1 MGITGLSKVIADNAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAVRQENN--MLTNSDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A7S4DYF1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DYF1_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 8.880e-17
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGIKGL + I+DNAP+AI E  + TYFGR +AIDASM LY FL+A+R    A MLT+ +GE T
Sbjct:    1 MGIKGLMKFISDNAPDAIKEGEIKTYFGRKVAIDASMSLYQFLIAVRSGPDAQMLTNEAGEVT 63
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A6B0V9Z3_IXORI (Flap endonuclease 1 n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0V9Z3_IXORI)

HSP 1 Score: 80.1 bits (196), Expect = 3.250e-16
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL ++IADNAP AI E  + +YFGR IAIDASM LY FL+A+RQ+N   MLT++ GETT
Sbjct:    1 MGITGLSKVIADNAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAVRQENN--MLTNSDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A6P7VFA4_IXOSC (Flap endonuclease 1 n=8 Tax=Ixodidae TaxID=6939 RepID=A0A6P7VFA4_IXOSC)

HSP 1 Score: 80.1 bits (196), Expect = 3.400e-16
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL ++IADNAP AI E  + +YFGR IAIDASM LY FL+A+RQ+N   MLT++ GETT
Sbjct:    1 MGITGLSKVIADNAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAVRQENN--MLTNSDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: B7Q1M0_IXOSC (Flap endonuclease 1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7Q1M0_IXOSC)

HSP 1 Score: 79.0 bits (193), Expect = 9.050e-16
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL ++IADNAP AI E  + +YFG+ IAIDASM LY FL+A+RQ+N   MLT++ GETT
Sbjct:    1 MGITGLSKVIADNAPSAIKEGDIKSYFGKKIAIDASMCLYQFLIAVRQENN--MLTNSDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A177VS01_9BASI (Flap endonuclease 1 n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VS01_9BASI)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGIKGL  LI D AP+AI EA + TYFGR +AIDASM LY FL+A+RQ +   +++D SGETT
Sbjct:    1 MGIKGLTSLIQDEAPDAIKEADIKTYFGRKVAIDASMSLYQFLIAVRQQDGQQLMSD-SGETT 62
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A1Z5LFA5_ORNMO (Flap endonuclease (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5LFA5_ORNMO)

HSP 1 Score: 78.2 bits (191), Expect = 1.700e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL ++IAD+AP AI E  + +YFGR IAIDASM LY FL+A+RQ+N   MLT++ GETT
Sbjct:    1 MGITGLSKVIADHAPSAIKEGDIKSYFGRKIAIDASMCLYQFLIAVRQENN--MLTNSDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: W2TRF6_NECAM (XPG protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2TRF6_NECAM)

HSP 1 Score: 71.6 bits (174), Expect = 3.420e-15
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGIK L ++IADNAP AI    +  YFGR +AIDASM LY FL+A+RQD +   L   SGETT
Sbjct:    1 MGIKDLSKVIADNAPNAIKSGEMKGYFGRKVAIDASMCLYQFLIAVRQDGS--QLQSESGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: A0A8B9H2M9_ASTMX (XPGN domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9H2M9_ASTMX)

HSP 1 Score: 71.2 bits (173), Expect = 4.400e-15
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL +LIAD AP AI E  +  YFGR IA+DASM +Y FL+A+RQD    +L +  GETT
Sbjct:    1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAVDASMCIYQFLIAVRQDGN--VLQNEDGETT 61
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BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Match: B5XAA5_SALSA (Flap endonuclease 1-B n=2 Tax=Salmo salar TaxID=8030 RepID=B5XAA5_SALSA)

HSP 1 Score: 72.4 bits (176), Expect = 6.110e-15
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDNAAYMLTDASGETT 189
            MGI GL +LIAD AP AI E  +  YFGR IAIDASM +Y FLVA+RQD    +L + +GETT
Sbjct:    1 MGIHGLAKLIADQAPSAIKEQDIKNYFGRKIAIDASMCMYQFLVAVRQDGN--VLQNENGETT 61
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125704.5194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K8RE24_IXORI5.250e-1863.49Putative flap structure-specific endonuclease 1 n=... [more]
A0A7S4DYF1_9EUKA8.880e-1760.32Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A6B0V9Z3_IXORI3.250e-1663.49Flap endonuclease 1 n=1 Tax=Ixodes ricinus TaxID=3... [more]
A0A6P7VFA4_IXOSC3.400e-1663.49Flap endonuclease 1 n=8 Tax=Ixodidae TaxID=6939 Re... [more]
B7Q1M0_IXOSC9.050e-1661.90Flap endonuclease 1 n=1 Tax=Ixodes scapularis TaxI... [more]
A0A177VS01_9BASI1.330e-1561.90Flap endonuclease 1 n=2 Tax=Tilletia TaxID=13289 R... [more]
A0A1Z5LFA5_ORNMO1.700e-1561.90Flap endonuclease (Fragment) n=1 Tax=Ornithodoros ... [more]
W2TRF6_NECAM3.420e-1558.73XPG protein n=1 Tax=Necator americanus TaxID=51031... [more]
A0A8B9H2M9_ASTMX4.400e-1557.14XPGN domain-containing protein n=1 Tax=Astyanax me... [more]
B5XAA5_SALSA6.110e-1560.32Flap endonuclease 1-B n=2 Tax=Salmo salar TaxID=80... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125704contigM-pyrifera_M_contig125704:148..336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score76.6
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog120017.I2FXN4
Preferred nameFEN1
KEGG koko:K04799
KEGG Pathwayko03030,ko03410,ko03450,map03030,map03410,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000726,GO:0000731,GO:0000734,GO:0001302,GO:0003006,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004527,GO:0004529,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006284,GO:0006286,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006401,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008297,GO:0008309,GO:0008409,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016311,GO:0016787,GO:0016788,GO:0016796,GO:0016888,GO:0016893,GO:0016895,GO:0017108,GO:0018130,GO:0019438,GO:0019439,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0035312,GO:0035753,GO:0035822,GO:0035861,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045145,GO:0045165,GO:0046483,GO:0046700,GO:0048256,GO:0048869,GO:0050896,GO:0051276,GO:0051716,GO:0051908,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0090734,GO:0098501,GO:0098502,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902969,GO:1903047,GO:1903469,GO:1904162
EggNOG free text desc.Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA
EggNOG OGs38GN8@33154,3MYZS@452284,3NUX0@4751,3UYI3@5204,COG0258@1,KOG2519@2759
COG Functional cat.L
Best tax levelUstilaginomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400,ko04147
Exons1
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.6402187-CDS-M-pyrifera_M_contig125704:147..3361622815772.6402187-CDS-M-pyrifera_M_contig125704:147..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125704 148..336 -
1692277562.4058826-CDS-M-pyrifera_M_contig125704:147..3361692277562.4058826-CDS-M-pyrifera_M_contig125704:147..336Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125704 148..336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125704.5194.1prot_M-pyrifera_M_contig125704.5194.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125704 148..336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125704.5194.1

>prot_M-pyrifera_M_contig125704.5194.1 ID=prot_M-pyrifera_M_contig125704.5194.1|Name=mRNA_M-pyrifera_M_contig125704.5194.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
MGIKGLKRLIADNAPEAIHEAGVPTYFGRSIAIDASMFLYSFLVAIRQDN
AAYMLTDASGETT
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mRNA from alignment at M-pyrifera_M_contig125704:148..336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125704.5194.1 ID=mRNA_M-pyrifera_M_contig125704.5194.1|Name=mRNA_M-pyrifera_M_contig125704.5194.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig125704:148..336- (Macrocystis pyrifera P11B4 male)
ATGGGAATCAAAGGACTGAAGCGCCTCATCGCCGACAATGCGCCGGAGGC
CATCCACGAAGCGGGGGTGCCCACCTACTTCGGCAGGTCCATCGCCATCG
ACGCCAGCATGTTCCTCTACTCTTTCCTCGTGGCCATTCGCCAGGACAAC
GCCGCCTACATGCTCACTGACGCCTCTGGCGAGACCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125704:148..336-

>mRNA_M-pyrifera_M_contig125704.5194.1 ID=mRNA_M-pyrifera_M_contig125704.5194.1|Name=mRNA_M-pyrifera_M_contig125704.5194.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig125704:148..336- (Macrocystis pyrifera P11B4 male)
ATGGGAATCAAAGGACTGAAGCGCCTCATCGCCGACAATGCGCCGGAGGC
CATCCACGAAGCGGGGGTGCCCACCTACTTCGGCAGGTCCATCGCCATCG
ACGCCAGCATGTTCCTCTACTCTTTCCTCGTGGCCATTCGCCAGGACAAC
GCCGCCTACATGCTCACTGACGCCTCTGGCGAGACCACCATGGGAATCAA
AGGACTGAAGCGCCTCATCGCCGACAATGCGCCGGAGGCCATCCACGAAG
CGGGGGTGCCCACCTACTTCGGCAGGTCCATCGCCATCGACGCCAGCATG
TTCCTCTACTCTTTCCTCGTGGCCATTCGCCAGGACAACGCCGCCTACAT
GCTCACTGACGCCTCTGGCGAGACCACC
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