mRNA_M-pyrifera_M_contig12564.5183.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12564.5183.1
Unique NamemRNA_M-pyrifera_M_contig12564.5183.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.520e-15
Identity = 48/103 (46.60%), Postives = 54/103 (52.43%), Query Frame = 3 
Query:  186 MLAHFKNKTLAPSTTVSSLSSY----RRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            MLAH K K    +T  +S SSY    R CYVEQVDQ  P ANRSNG RY+GPRG TYRRQAV G G      FP               G  P    F++W +
Sbjct:    1 MLAHLKKKMARSNTCAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHQWFNSHPLGGDPNLYNFQTWAR 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.390e-12
Identity = 44/94 (46.81%), Postives = 49/94 (52.13%), Query Frame = 3 
Query:  213 LAPSTTV----SSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            +A STT     S  +SYR CYVEQVDQ  P ANRSNG RY GPRG TYRRQAV G G      FP               G  P    F++W +
Sbjct:    1 MARSTTAAVSSSRAASYRWCYVEQVDQAEPLANRSNGWRYRGPRGVTYRRQAVFGTGYRIRISFPSSAGPGHTWFNSHPVGGDPNLYSFQTWAR 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.380e-12
Identity = 45/109 (41.28%), Postives = 52/109 (47.71%), Query Frame = 3 
Query:  210 TLAPSTTVSSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFA---PCFPPPRDRDTNGLTRIH----W------------GEIPVSKVFKSWR 479
            T   + + S  SSYR CYVEQVDQ  P A RSNG RY+GP G TYRRQAV G G       P  P P  R   G+        W            G++ VS    +WR
Sbjct:    5 TTTAAVSSSHASSYRWCYVEQVDQAEPLAGRSNGWRYMGPGGVTYRRQAVFGTGFRIRISFPSSPGPGHRQVRGMVHPRDAEAWRTAFVDVEGGGLGQLVVSAADDTWR 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.330e-12
Identity = 40/91 (43.96%), Postives = 47/91 (51.65%), Query Frame = 3 
Query:  210 TLAPSTTVSSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            T A + + S  +SYR CYVEQVDQ  P A RSNG RY+GP G TYRRQAV G G      FP               G  P    F++W +
Sbjct:    5 TTAAAVSSSHATSYRWCYVEQVDQAEPLAGRSNGWRYMGPGGVTYRRQAVFGTGFRIRISFPSSPGPGHRWFNSHPLGGDPNLYNFQTWAR 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5KEQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 8.450e-12
Identity = 43/91 (47.25%), Postives = 50/91 (54.95%), Query Frame = 3 
Query:  210 TLAPSTTVSSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            T AP ++ S  +SYR CYVEQVDQ AP A RSNG RY+GPRG TYRRQAV G G      FP               G  P    F++W +
Sbjct:    5 TTAPVSS-SHATSYRWCYVEQVDQAAPLAGRSNGWRYMGPRGVTYRRQAVFGAG-----SFPSSSGPGHMWFNSHPLGGDPNLYTFQTWAR 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 8.610e-12
Identity = 43/91 (47.25%), Postives = 48/91 (52.75%), Query Frame = 3 
Query:  216 APSTTVSS--LSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            A +  VSS   +SYR CYVEQVDQ AP A RSNG RYLGP G TYRRQAV G G      FP               G  P    F++W +
Sbjct:    4 ASTAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRYLGPGGITYRRQAVFGTGFRVRISFPSSPGPGYRWFNSHPLGGDPNLYNFQTWAR 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5L2B8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.070e-11
Identity = 40/91 (43.96%), Postives = 46/91 (50.55%), Query Frame = 3 
Query:  210 TLAPSTTVSSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRK 482
            T A + + S  +SYR CYVEQVDQ  P A RSNG  Y+GP G TYRRQAV G G      FP          T    G  P    F+ W +
Sbjct:    5 TTAAAVSSSHATSYRWCYVEQVDQAEPLAGRSNGWWYMGPGGVTYRRQAVFGTGFRIRISFPSSPGPGHRWFTSHPLGGDPNLYNFQIWAR 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5JDU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.720e-10
Identity = 36/62 (58.06%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:  216 APSTTVSS--LSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRGLGFAPCFP 395
            A +  VSS   +SYR C VEQVDQ A  A RSNG RY+GP G TYRRQAV G G+     FP
Sbjct:    4 ATTAAVSSPHATSYRWCCVEQVDQAAFVAGRSNGWRYMGPGGITYRRQAVFGTGIRVRISFP 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5K992_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K992_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.560e-10
Identity = 39/64 (60.94%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  186 MLAHFKNKTLAPSTTVS--SLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRG 371
            ML   KN+  A S   S    S YR CYVEQVDQ  P ANRSNG RY+GPRG TYRRQA  G G
Sbjct:    1 MLHRLKNRFAASSGEPSPPQQSVYRWCYVEQVDQAEPLANRSNGWRYVGPRGVTYRRQAGFGAG 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.740e-10
Identity = 35/54 (64.81%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:  216 APSTTVSS--LSSYRRCYVEQVDQGAPPANRSNGGRYLGPRGDTYRRQAVLGRG 371
            A +  VSS   +SYR CYVEQVDQ AP A RSNG R++GP G TYRRQAV G G
Sbjct:    4 ASTAAVSSPHATSYRWCYVEQVDQAAPLAGRSNGWRHMGPEGITYRRQAVFGTG 57
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12564.5183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JDB7_9PHAE1.520e-1546.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE1.390e-1246.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LNU8_9PHAE3.380e-1241.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE6.330e-1243.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEQ4_9PHAE8.450e-1247.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI8.610e-1247.25Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L2B8_9PHAE4.070e-1143.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDU4_9PHAE1.720e-1058.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K992_9PHAE2.560e-1060.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE4.740e-1064.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12564contigM-pyrifera_M_contig12564:838..1322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FQN9
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.1252015-UTR-M-pyrifera_M_contig12564:837..10221622815772.1252015-UTR-M-pyrifera_M_contig12564:837..1022Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12564 838..1022 +
1692277562.146042-UTR-M-pyrifera_M_contig12564:837..10221692277562.146042-UTR-M-pyrifera_M_contig12564:837..1022Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12564 838..1022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815772.1404152-CDS-M-pyrifera_M_contig12564:1022..13221622815772.1404152-CDS-M-pyrifera_M_contig12564:1022..1322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12564 1023..1322 +
1692277562.1590145-CDS-M-pyrifera_M_contig12564:1022..13221692277562.1590145-CDS-M-pyrifera_M_contig12564:1022..1322Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12564 1023..1322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12564.5183.1prot_M-pyrifera_M_contig12564.5183.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12564 1023..1322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12564.5183.1

>prot_M-pyrifera_M_contig12564.5183.1 ID=prot_M-pyrifera_M_contig12564.5183.1|Name=mRNA_M-pyrifera_M_contig12564.5183.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MLAHFKNKTLAPSTTVSSLSSYRRCYVEQVDQGAPPANRSNGGRYLGPRG
DTYRRQAVLGRGLGFAPCFPPPRDRDTNGLTRIHWGEIPVSKVFKSWRKR
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mRNA from alignment at M-pyrifera_M_contig12564:838..1322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12564.5183.1 ID=mRNA_M-pyrifera_M_contig12564.5183.1|Name=mRNA_M-pyrifera_M_contig12564.5183.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=485bp|location=Sequence derived from alignment at M-pyrifera_M_contig12564:838..1322+ (Macrocystis pyrifera P11B4 male)
AACCGCCAACAACCACTCACATGCATACAAGGCGCATAACTTTTGACGGA
TAACAATCAACACCAGATCGAACCTCACTCGCTCACAATTGTTACCTCTC
GCACGCAGAAGGATTCTATTATTCTTACCCACAAAGCACCGTATTTTCAC
CGTGGTCGACGCTTCGCGTGGAAGTGAGAAACAAAATGTTGGCTCACTTC
AAAAATAAGACTTTGGCACCATCCACGACTGTGTCATCTCTGAGCAGCTA
CCGGCGGTGCTACGTGGAGCAGGTGGACCAGGGCGCGCCCCCGGCAAACA
GGAGCAACGGGGGGCGGTACTTGGGGCCCCGAGGGGACACTTATCGACGA
CAGGCCGTCCTGGGACGGGGTTTAGGGTTTGCACCTTGTTTCCCTCCTCC
ACGGGACCGGGACACAAATGGTTTAACTCGCATCCACTGGGGGGAGATCC
CAGTCTCCAAAGTCTTCAAAAGTTGGCGAAAAAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12564:838..1322+

>mRNA_M-pyrifera_M_contig12564.5183.1 ID=mRNA_M-pyrifera_M_contig12564.5183.1|Name=mRNA_M-pyrifera_M_contig12564.5183.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig12564:838..1322+ (Macrocystis pyrifera P11B4 male)
ATGTTGGCTCACTTCAAAAATAAGACTTTGGCACCATCCACGACTGTGTC
ATCTCTGAGCAGCTACCGGCGGTGCTACGTGGAGCAGGTGGACCAGGGCG
CGCCCCCGGCAAACAGGAGCAACGGGGGGCGGTACTTGGGGCCCCGAGGG
GACACTTATCGACGACAGGCCGTCCTGGGACGGGGTTTAGGGTTTGCACC
TTGTTTCCCTCCTCCACGGGACCGGGACACAAATGGTTTAACTCGCATCC
ACTGGGGGGAGATCCCAGTCTCCAAAGTCTTCAAAAGTTGGCGAAAAAGG
ATGTTGGCTCACTTCAAAAATAAGACTTTGGCACCATCCACGACTGTGTC
ATCTCTGAGCAGCTACCGGCGGTGCTACGTGGAGCAGGTGGACCAGGGCG
CGCCCCCGGCAAACAGGAGCAACGGGGGGCGGTACTTGGGGCCCCGAGGG
GACACTTATCGACGACAGGCCGTCCTGGGACGGGGTTTAGGGTTTGCACC
TTGTTTCCCTCCTCCACGGGACCGGGACACAAATGGTTTAACTCGCATCC
ACTGGGGGGAGATCCCAGTCTCCAAAGTCTTCAAAAGTTGGCGAAAAAGG
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