mRNA_M-pyrifera_M_contig125439.5135.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125439.5135.1
Unique NamemRNA_M-pyrifera_M_contig125439.5135.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A2E7C884_9GAMM (Replicative DNA helicase n=9 Tax=Halieaceae TaxID=1706372 RepID=A0A2E7C884_9GAMM)

HSP 1 Score: 265 bits (678), Expect = 4.530e-85
Identity = 134/143 (93.71%), Postives = 139/143 (97.20%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDEE 429
            R+ R  G+IG+IMV YIQL+QVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEII+GKQRNGPIGTCRLAFIGQFTRFENLARGHYDEE
Sbjct:  331 RIAREHGQIGMIMVDYIQLMQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIIIGKQRNGPIGTCRLAFIGQFTRFENLARGHYDEE 473
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A6C0UA78_9GAMM (Replicative DNA helicase n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0UA78_9GAMM)

HSP 1 Score: 253 bits (646), Expect = 1.910e-80
Identity = 127/142 (89.44%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            RV R  G++G+IMV YIQL+Q+AGSSEGRTAEISEISRSLKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNED+PDKGTAEII+GKQRNGPIG CRLAFIGQFTRFENLARG+Y+E
Sbjct:  315 RVAREHGQLGMIMVDYIQLMQIAGSSEGRTAEISEISRSLKAIAKEFDCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDTPDKGTAEIIIGKQRNGPIGVCRLAFIGQFTRFENLARGNYEE 456
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: UPI001679BE14 (replicative DNA helicase n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI001679BE14)

HSP 1 Score: 252 bits (643), Expect = 7.070e-80
Identity = 124/142 (87.32%), Postives = 135/142 (95.07%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            R+ R  G+IG+IM+ Y+QL+Q+AGSSEGRTAEISEISR+LKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVI FIYRDEVYNEDSPDKG AEII+GKQRNGPIGTCRLAFIGQ+TRFENLARGHYD+
Sbjct:  326 RIAREHGQIGMIMIDYLQLMQIAGSSEGRTAEISEISRNLKAIAKEFNCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIAFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGTCRLAFIGQYTRFENLARGHYDD 467
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A2N5Y039_9GAMM (Replicative DNA helicase n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y039_9GAMM)

HSP 1 Score: 252 bits (643), Expect = 9.220e-80
Identity = 127/142 (89.44%), Postives = 136/142 (95.77%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            R+ R  G +G+IMV YIQL+QVAGSS+GRTAEISEISRSLKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDAD+IMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIG+CRLAF+GQFTRFENLARG+YDE
Sbjct:  336 RIIREHGPLGMIMVDYIQLMQVAGSSDGRTAEISEISRSLKAIAKEFKCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADLIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGSCRLAFVGQFTRFENLARGNYDE 477
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A5C8ZPV3_9GAMM (Replicative DNA helicase n=4 Tax=Parahaliea TaxID=1857932 RepID=A0A5C8ZPV3_9GAMM)

HSP 1 Score: 251 bits (641), Expect = 1.890e-79
Identity = 124/142 (87.32%), Postives = 135/142 (95.07%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            R+ R  GE+G++MV Y+QL+QVAGSSEGRTAEISEISR+LKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKG AEII+GKQRNGPIGTCRLAF+GQFTRFENLARG Y++
Sbjct:  336 RISREHGELGMVMVDYLQLMQVAGSSEGRTAEISEISRNLKAIAKEFQCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGTCRLAFVGQFTRFENLARGSYED 477
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A7W2TTA7_9GAMM (Replicative DNA helicase n=1 Tax=Sediminihaliea albiluteola TaxID=2758564 RepID=A0A7W2TTA7_9GAMM)

HSP 1 Score: 249 bits (636), Expect = 9.090e-79
Identity = 122/137 (89.05%), Postives = 133/137 (97.08%), Query Frame = 1 
Query:   16 GGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            GGE+G+IM+ Y+QL+QVAGSSEGRTAEISEISR+LKAIAKEF CP+VALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKG AEII+GKQRNGPIGTCRLAF+GQFTRFENLARG Y++
Sbjct:  335 GGELGMIMIDYLQLMQVAGSSEGRTAEISEISRNLKAIAKEFTCPVVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGTCRLAFVGQFTRFENLARGAYED 471
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: UPI0019D3351C (replicative DNA helicase n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3351C)

HSP 1 Score: 248 bits (632), Expect = 3.440e-78
Identity = 125/142 (88.03%), Postives = 134/142 (94.37%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            RV R  G IG+IMV Y+QL+Q+AGSSEGRTAEISEISR+LKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVY+EDSPDKG AEII+GKQRNGPIGTCRLAFIGQFTRFENLARG Y++
Sbjct:  329 RVAREHGGIGMIMVDYLQLMQIAGSSEGRTAEISEISRNLKAIAKEFNCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYHEDSPDKGVAEIIIGKQRNGPIGTCRLAFIGQFTRFENLARGSYED 470
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A2D5F6K5_9GAMM (Replicative DNA helicase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5F6K5_9GAMM)

HSP 1 Score: 246 bits (628), Expect = 1.300e-77
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDEE 429
            R+ R  G + +IMV YIQL+QVAGSSEGRTAEISEISRSLKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKG AEII+GKQRNGPIGTCRLAFIGQ+TRFENLA G Y +E
Sbjct:  326 RIVREHGNLAMIMVDYIQLMQVAGSSEGRTAEISEISRSLKAIAKEFNCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGTCRLAFIGQYTRFENLAHGSYQQE 468
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BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: B7RW86_9GAMM (Replicative DNA helicase n=3 Tax=Halieaceae TaxID=1706372 RepID=B7RW86_9GAMM)

HSP 1 Score: 245 bits (626), Expect = 2.670e-77
Identity = 121/136 (88.97%), Postives = 131/136 (96.32%), Query Frame = 1 
Query:   19 GEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            GE+G++M+ Y+QL+QVAGSSEGRTAEISEISRSLKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKG AEII+GKQRNGPIG+CRLAFIGQ+TRFENLARG  D+
Sbjct:  333 GELGMVMIDYLQLMQVAGSSEGRTAEISEISRSLKAIAKEFECPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGSCRLAFIGQYTRFENLARGFSDD 468
[Close]
BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Match: A0A7V0ZM46_9GAMM (Replicative DNA helicase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7V0ZM46_9GAMM)

HSP 1 Score: 244 bits (623), Expect = 7.330e-77
Identity = 124/142 (87.32%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDSPDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDE 426
            RV R  G +G+IMV Y+QL+QVAGS++ RTAEISEISRSLKAIAKEF CPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVI+FIYRDEVYNEDSPDKG AEII+GKQRNGPIGTCRLAFIGQ TRFENLARG YDE
Sbjct:  326 RVYRENGGLGMIMVDYLQLMQVAGSTDNRTAEISEISRSLKAIAKEFDCPMVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVILFIYRDEVYNEDSPDKGVAEIIIGKQRNGPIGTCRLAFIGQHTRFENLARGSYDE 467
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125439.5135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7C884_9GAMM4.530e-8593.71Replicative DNA helicase n=9 Tax=Halieaceae TaxID=... [more]
A0A6C0UA78_9GAMM1.910e-8089.44Replicative DNA helicase n=1 Tax=Kineobactrum sali... [more]
UPI001679BE147.070e-8087.32replicative DNA helicase n=1 Tax=Halioglobus pacif... [more]
A0A2N5Y039_9GAMM9.220e-8089.44Replicative DNA helicase n=1 Tax=Kineobactrum sedi... [more]
A0A5C8ZPV3_9GAMM1.890e-7987.32Replicative DNA helicase n=4 Tax=Parahaliea TaxID=... [more]
A0A7W2TTA7_9GAMM9.090e-7989.05Replicative DNA helicase n=1 Tax=Sediminihaliea al... [more]
UPI0019D3351C3.440e-7888.03replicative DNA helicase n=1 Tax=Parahaliea medite... [more]
A0A2D5F6K5_9GAMM1.300e-7787.41Replicative DNA helicase n=1 Tax=Haliea sp. TaxID=... [more]
B7RW86_9GAMM2.670e-7788.97Replicative DNA helicase n=3 Tax=Halieaceae TaxID=... [more]
A0A7V0ZM46_9GAMM7.330e-7787.32Replicative DNA helicase n=3 Tax=Gammaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125439contigM-pyrifera_M_contig125439:82..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score266.2
Seed ortholog evalue9.2e-69
Seed eggNOG ortholog1121937.AUHJ01000018_gene262
Preferred namednaB
KEGG koko:K02314
KEGG Pathwayko03030,ko04112,map03030,map04112
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003678,GO:0003824,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0032392,GO:0032508,GO:0034641,GO:0034645,GO:0042802,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0140097,GO:1901360,GO:1901576
EggNOG free text desc.it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins
EggNOG OGs1MUG9@1224,1RPM2@1236,4657V@72275,COG0305@1,COG0305@2
EC3.6.4.12
COG Functional cat.L
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.8249803-CDS-M-pyrifera_M_contig125439:81..5131622815769.8249803-CDS-M-pyrifera_M_contig125439:81..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125439 82..513 -
1692277561.0271208-CDS-M-pyrifera_M_contig125439:81..5131692277561.0271208-CDS-M-pyrifera_M_contig125439:81..513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125439 82..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125439.5135.1prot_M-pyrifera_M_contig125439.5135.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125439 82..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125439.5135.1

>prot_M-pyrifera_M_contig125439.5135.1 ID=prot_M-pyrifera_M_contig125439.5135.1|Name=mRNA_M-pyrifera_M_contig125439.5135.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
RVGRGGGEIGVIMVGYIQLVQVAGSSEGRTAEISEISRSLKAIAKEFACP
MVALSQLNRSLEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNEDS
PDKGTAEIILGKQRNGPIGTCRLAFIGQFTRFENLARGHYDEE*
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mRNA from alignment at M-pyrifera_M_contig125439:82..513-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125439.5135.1 ID=mRNA_M-pyrifera_M_contig125439.5135.1|Name=mRNA_M-pyrifera_M_contig125439.5135.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig125439:82..513- (Macrocystis pyrifera P11B4 male)
CGCGTTGGCCGCGGGGGCGGGGAGATCGGCGTGATCATGGTGGGCTATAT
CCAGCTGGTGCAGGTGGCGGGTTCCTCCGAGGGCCGCACCGCCGAGATCT
CGGAAATCTCGCGCAGCCTGAAGGCCATCGCCAAGGAGTTCGCCTGCCCC
ATGGTGGCGCTCTCGCAGCTCAACCGTTCGCTGGAACAACGTCCGAACAA
GCGTCCGGTGAACTCCGACTTGCGCGAGTCAGGTGCCATCGAGCAGGATG
CGGACGTCATCATGTTCATCTACCGCGACGAGGTCTACAACGAGGATTCG
CCCGATAAGGGCACCGCGGAAATCATCCTGGGCAAGCAGCGGAACGGCCC
CATCGGCACCTGCCGGCTGGCGTTTATCGGCCAGTTCACCCGCTTTGAGA
ACCTCGCACGCGGACACTACGACGAGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig125439:82..513-

>mRNA_M-pyrifera_M_contig125439.5135.1 ID=mRNA_M-pyrifera_M_contig125439.5135.1|Name=mRNA_M-pyrifera_M_contig125439.5135.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig125439:82..513- (Macrocystis pyrifera P11B4 male)
CGCGTTGGCCGCGGGGGCGGGGAGATCGGCGTGATCATGGTGGGCTATAT
CCAGCTGGTGCAGGTGGCGGGTTCCTCCGAGGGCCGCACCGCCGAGATCT
CGGAAATCTCGCGCAGCCTGAAGGCCATCGCCAAGGAGTTCGCCTGCCCC
ATGGTGGCGCTCTCGCAGCTCAACCGTTCGCTGGAACAACGTCCGAACAA
GCGTCCGGTGAACTCCGACTTGCGCGAGTCAGGTGCCATCGAGCAGGATG
CGGACGTCATCATGTTCATCTACCGCGACGAGGTCTACAACGAGGATTCG
CCCGATAAGGGCACCGCGGAAATCATCCTGGGCAAGCAGCGGAACGGCCC
CATCGGCACCTGCCGGCTGGCGTTTATCGGCCAGTTCACCCGCTTTGAGA
ACCTCGCACGCGGACACTACGACGAGGAATAGCGCGTTGGCCGCGGGGGC
GGGGAGATCGGCGTGATCATGGTGGGCTATATCCAGCTGGTGCAGGTGGC
GGGTTCCTCCGAGGGCCGCACCGCCGAGATCTCGGAAATCTCGCGCAGCC
TGAAGGCCATCGCCAAGGAGTTCGCCTGCCCCATGGTGGCGCTCTCGCAG
CTCAACCGTTCGCTGGAACAACGTCCGAACAAGCGTCCGGTGAACTCCGA
CTTGCGCGAGTCAGGTGCCATCGAGCAGGATGCGGACGTCATCATGTTCA
TCTACCGCGACGAGGTCTACAACGAGGATTCGCCCGATAAGGGCACCGCG
GAAATCATCCTGGGCAAGCAGCGGAACGGCCCCATCGGCACCTGCCGGCT
GGCGTTTATCGGCCAGTTCACCCGCTTTGAGAACCTCGCACGCGGACACT
ACGACGAGGAATAG
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