mRNA_M-pyrifera_M_contig125438.5134.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig125438.5134.1
Unique NamemRNA_M-pyrifera_M_contig125438.5134.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A4P9Y9M9_ROZAC (MYND-type domain-containing protein (Fragment) n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9Y9M9_ROZAC)

HSP 1 Score: 51.2 bits (121), Expect = 4.540e-7
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 TRRKMSRCAKCRVARYCSRDCQVGDWKSSHKKWC 102
            T    SRC++C++A YCSRDCQ+  WKS H+ WC
Sbjct:   20 TEAPFSRCSRCKLAWYCSRDCQLAAWKSGHRHWC 53
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: UPI000BA80DED (uncharacterized protein LOC111083001 isoform X1 n=2 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA80DED)

HSP 1 Score: 54.3 bits (129), Expect = 6.640e-7
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    7 RKMSRCAKCRVARYCSRDCQVGDWKSSHKKWCK 105
            +K+ +C KC VA+YCS+DCQ+ DWK  H +WC+
Sbjct:  194 KKLLKCGKCNVAKYCSKDCQISDWKRRHNEWCQ 226
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A4P9YCC6_ROZAC (MYND-type domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A4P9YCC6_ROZAC)

HSP 1 Score: 53.5 bits (127), Expect = 1.610e-6
Identity = 19/32 (59.38%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   16 SRCAKCRVARYCSRDCQVGDWKSSHKKWCKQM 111
            SRC+KC++A YCSRDCQ+  WKS H+ WC+ +
Sbjct:  288 SRCSKCKLAWYCSRDCQLAAWKSGHRHWCRHL 319
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A836C4G5_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C4G5_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.320e-5
Identity = 21/35 (60.00%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:   19 RCAKCRVARYCSRDCQVGDWKSSHKKWCKQMGATA 123
            RC  CR  RYCSR CQV DW+  HK+ CKQM   A
Sbjct:   90 RCGGCRQRRYCSRACQVADWRGGHKEACKQMAEEA 124
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A8H2ZNM0_9HELO (MYND-type zinc finger protein samB n=1 Tax=Sclerotinia trifoliorum TaxID=28548 RepID=A0A8H2ZNM0_9HELO)

HSP 1 Score: 49.3 bits (116), Expect = 1.380e-5
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:    4 RRKMSRCAKCRVARYCSRDCQVGDWKSSHKKWCKQ 108
            R  +  CA+C+   YCS  CQ  DW+S HKKWCK+
Sbjct:   85 RENLKNCARCKATWYCSAQCQKVDWRSRHKKWCKE 119
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: C5LCK7_PERM5 (MYND-type domain-containing protein (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LCK7_PERM5)

HSP 1 Score: 47.8 bits (112), Expect = 1.990e-5
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:   10 KMSRCAKCRVARYCSRDCQVGDWKSSHKKWC 102
            K+  C++C+VARYCS  CQ  DWK+ HK+ C
Sbjct:   34 KLKTCSRCKVARYCSTQCQASDWKAGHKREC 64
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: J0LEG9_AURST (MYND-type domain-containing protein n=1 Tax=Auricularia subglabra (strain TFB-10046 / SS5) TaxID=717982 RepID=J0LEG9_AURST)

HSP 1 Score: 50.4 bits (119), Expect = 2.010e-5
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   22 CAKCRVARYCSRDCQVGDWKSSHKKWCKQMGA 117
            CA+C++ARYCSRDCQ  DW S HK+ C+ + A
Sbjct:  377 CARCKLARYCSRDCQRADWASGHKRICRVLSA 408
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A7S1UWB5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWB5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.020e-5
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   10 KMSRCAKCRVARYCSRDCQVGDWKSSHKKWCKQM 111
            K+ +CA+C+   YCSR+CQ+ DW+S HKK CK +
Sbjct:  484 KLQKCARCKQVTYCSRECQLKDWESGHKKLCKSL 517
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A1E7FEW3_9STRA (MYND-type domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEW3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.040e-5
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    7 RKMSRCAKCRVARYCSRDCQVGDWKSS-HKKWCKQMGATAQ 126
            +K+S+C KC+VA YCSRDCQ+ DWK+  HK  C      AQ
Sbjct:   31 KKLSKCGKCQVAAYCSRDCQMSDWKTGRHKMACPSYARVAQ 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Match: A0A7S0F684_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7S0F684_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.440e-5
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   10 KMSRCAKCRVARYCSRDCQVGDWKSS-HKKWCK 105
            K+S+C+KC+ A+YCSRDCQV DWK   HK  CK
Sbjct:   72 KLSKCSKCQTAKYCSRDCQVNDWKDGRHKLVCK 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig125438.5134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9Y9M9_ROZAC4.540e-755.88MYND-type domain-containing protein (Fragment) n=1... [more]
UPI000BA80DED6.640e-754.55uncharacterized protein LOC111083001 isoform X1 n=... [more]
A0A4P9YCC6_ROZAC1.610e-659.38MYND-type domain-containing protein n=1 Tax=Rozell... [more]
A0A836C4G5_9CHLO1.320e-560.00MYND-type domain-containing protein n=1 Tax=Edapho... [more]
A0A8H2ZNM0_9HELO1.380e-551.43MYND-type zinc finger protein samB n=1 Tax=Sclerot... [more]
C5LCK7_PERM51.990e-554.84MYND-type domain-containing protein (Fragment) n=1... [more]
J0LEG9_AURST2.010e-559.38MYND-type domain-containing protein n=1 Tax=Auricu... [more]
A0A7S1UWB5_9STRA2.020e-552.94Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FEW3_9STRA2.040e-553.66MYND-type domain-containing protein (Fragment) n=1... [more]
A0A7S0F684_9STRA2.440e-563.64Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig125438contigM-pyrifera_M_contig125438:46..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size210
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.778669-UTR-M-pyrifera_M_contig125438:45..571622815769.778669-UTR-M-pyrifera_M_contig125438:45..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125438 46..57 +
1692277561.006489-UTR-M-pyrifera_M_contig125438:45..571692277561.006489-UTR-M-pyrifera_M_contig125438:45..57Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig125438 46..57 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815769.7908711-CDS-M-pyrifera_M_contig125438:57..2671622815769.7908711-CDS-M-pyrifera_M_contig125438:57..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125438 58..267 +
1692277561.016309-CDS-M-pyrifera_M_contig125438:57..2671692277561.016309-CDS-M-pyrifera_M_contig125438:57..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig125438 58..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig125438.5134.1prot_M-pyrifera_M_contig125438.5134.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig125438 58..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig125438.5134.1

>prot_M-pyrifera_M_contig125438.5134.1 ID=prot_M-pyrifera_M_contig125438.5134.1|Name=mRNA_M-pyrifera_M_contig125438.5134.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MSRCAKCRVARYCSRDCQVGDWKSSHKKWCKQMGATAQGDNLAVEVAIAA
AAKEDATPTAASADAVAPA*
back to top

mRNA from alignment at M-pyrifera_M_contig125438:46..267+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig125438.5134.1 ID=mRNA_M-pyrifera_M_contig125438.5134.1|Name=mRNA_M-pyrifera_M_contig125438.5134.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig125438:46..267+ (Macrocystis pyrifera P11B4 male)
ACGAGGCGCAAGATGTCGCGGTGCGCAAAGTGCCGCGTGGCGCGCTACTG
CTCGCGCGACTGCCAGGTGGGTGACTGGAAGAGCAGCCACAAGAAGTGGT
GCAAGCAGATGGGTGCCACCGCGCAGGGCGACAACTTGGCAGTGGAAGTG
GCCATCGCGGCAGCGGCGAAGGAGGACGCCACGCCGACTGCCGCGAGTGC
GGACGCGGTAGCACCCGCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig125438:46..267+

>mRNA_M-pyrifera_M_contig125438.5134.1 ID=mRNA_M-pyrifera_M_contig125438.5134.1|Name=mRNA_M-pyrifera_M_contig125438.5134.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig125438:46..267+ (Macrocystis pyrifera P11B4 male)
ATGTCGCGGTGCGCAAAGTGCCGCGTGGCGCGCTACTGCTCGCGCGACTG
CCAGGTGGGTGACTGGAAGAGCAGCCACAAGAAGTGGTGCAAGCAGATGG
GTGCCACCGCGCAGGGCGACAACTTGGCAGTGGAAGTGGCCATCGCGGCA
GCGGCGAAGGAGGACGCCACGCCGACTGCCGCGAGTGCGGACGCGGTAGC
ACCCGCGTGAATGTCGCGGTGCGCAAAGTGCCGCGTGGCGCGCTACTGCT
CGCGCGACTGCCAGGTGGGTGACTGGAAGAGCAGCCACAAGAAGTGGTGC
AAGCAGATGGGTGCCACCGCGCAGGGCGACAACTTGGCAGTGGAAGTGGC
CATCGCGGCAGCGGCGAAGGAGGACGCCACGCCGACTGCCGCGAGTGCGG
ACGCGGTAGCACCCGCGTGA
back to top