mRNA_M-pyrifera_M_contig124890.5058.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124890.5058.1
Unique NamemRNA_M-pyrifera_M_contig124890.5058.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A7X3TYR4_9BACT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X3TYR4_9BACT)

HSP 1 Score: 197 bits (501), Expect = 1.130e-60
Identity = 91/131 (69.47%), Postives = 110/131 (83.97%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGN-NGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+ +VFDRVTGEPVWPIEE  VPPATMPGDVASPTQP P+KP PFEYQG+ I+DL+DFTPE+R  AV+A+  F +GPL+TPPSL  +G  +GT+QRP + GGANW GAGVDP+TG+LYVPS N  S+
Sbjct:   14 VTKQGFAYVFDRVTGEPVWPIEERPVPPATMPGDVASPTQPFPTKPPPFEYQGVSIDDLVDFTPEIRAMAVEAVRDFNLGPLYTPPSLPVEGGTHGTLQRPRIDGGANWQGAGVDPETGLLYVPSENGVSM 144          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A2E8E1X7_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2E8E1X7_9BACT)

HSP 1 Score: 191 bits (486), Expect = 4.470e-55
Identity = 87/131 (66.41%), Postives = 109/131 (83.21%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGN-NGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+ +VFDR TG+PVWPI+E  VPPATMPGDVASPTQP P+KP PFEY G+ I+DL+DFTPE+R  AV+A++ F +GP++TPP+LA +G   GTIQRP  GGGANW GA VDP+TG+LYVPS N+ S+
Sbjct:  376 VTKQGFTYVFDRATGDPVWPIDERPVPPATMPGDVASPTQPFPTKPPPFEYLGVTIDDLVDFTPEIRAMAVEAVKNFRLGPIYTPPTLAVEGGLQGTIQRPSAGGGANWSGAAVDPETGLLYVPSTNAISV 506          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A831T069_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A831T069_9BACT)

HSP 1 Score: 192 bits (489), Expect = 4.860e-55
Identity = 90/131 (68.70%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGNN-GTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+CFVFDRVTG+P+WPIEE  VPP+ +PG+ ASPTQP P+KP PFEYQG+ I+DLIDFTP LR +A++ I+ F IGPL+TPPSLA  G+  GTIQRPG+ GGANW GA VDP+TGILYVPSRN+ ++
Sbjct:  475 VTKQGFCFVFDRVTGKPIWPIEERPVPPSDIPGEKASPTQPFPTKPPPFEYQGVTIDDLIDFTPALRAEAIEIIKRFRIGPLYTPPSLAVPGSTQGTIQRPGIIGGANWEGAAVDPETGILYVPSRNAITV 605          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A321LBF1_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase n=1 Tax=Blastocatellia bacterium AA13 TaxID=2169413 RepID=A0A321LBF1_9BACT)

HSP 1 Score: 188 bits (477), Expect = 1.120e-53
Identity = 87/131 (66.41%), Postives = 107/131 (81.68%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGNN-GTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+C+VFDR+TG+PVWPIEE  VP + +PG+ A+ TQP P+KP PFEYQG+ ++DLIDFTPELR +AV  I  F IGPLFTPPSL  +G   GTI+RPG GGGANW GA +DP+TGILYVPSRN +S+
Sbjct:  401 VTKQGFCYVFDRITGKPVWPIEERPVPASDVPGERAAATQPFPTKPAPFEYQGVAVDDLIDFTPELRAEAVNTIHKFRIGPLFTPPSLDVEGGTQGTIERPGEGGGANWQGAAIDPETGILYVPSRNGFSV 531          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A2V8FPU7_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8FPU7_9BACT)

HSP 1 Score: 182 bits (462), Expect = 1.410e-51
Identity = 87/131 (66.41%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSL-AGDGNNGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+ F FDRVTGEPVWPI+E   PP+ +PG+ A+ TQP P++P PFEYQG+ I+DL DFTPE+R  AV AI  F IGPL+TPPSL    GN GT+ RP  GGGANW GA VDPDTG+LYVPSRNS SI
Sbjct:  393 VTKQGFVFTFDRVTGEPVWPIQERPAPPSDVPGEHAAATQPFPTRPAPFEYQGVTIDDLADFTPEIRAMAVAAIRNFRIGPLYTPPSLFVPGGNQGTLGRPSAGGGANWSGAAVDPDTGMLYVPSRNSMSI 523          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A2V8B8S1_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8B8S1_9BACT)

HSP 1 Score: 182 bits (462), Expect = 1.570e-51
Identity = 87/131 (66.41%), Postives = 102/131 (77.86%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSL-AGDGNNGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQG+ F FDRVTGEPVWPI+E   PP+ +PG+ A+ TQP P++P PFEYQG+ I+DL DFTPE+R  AV AI  F IGPL+TPPSL    GN GT+ RP  GGGANW GA VDPDTG+LYVPSRNS SI
Sbjct:  393 VTKQGFVFTFDRVTGEPVWPIQERPAPPSDVPGEHAAATQPFPTRPAPFEYQGVTIDDLADFTPEIRAMAVAAIRNFRIGPLYTPPSLFVPGGNQGTLGRPSAGGGANWSGAAVDPDTGMLYVPSRNSMSI 523          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A1F2V7F5_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_67_14b TaxID=1797193 RepID=A0A1F2V7F5_9BACT)

HSP 1 Score: 181 bits (460), Expect = 2.520e-51
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGNNGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            +TKQGY F FDRVTG+PVWPI+E  VPP+ +PG+ ASPTQPVPSKP PFE+QG+ ++DL+DFTPELR  AVKAIE F  GPL+TPPS+ G     TI RPG  GG NW GA VDP TG +YVPSRN+++I
Sbjct:  390 LTKQGYIFTFDRVTGKPVWPIDERAVPPSDVPGEKASPTQPVPSKPAPFEHQGVTVDDLVDFTPELRAMAVKAIEPFKYGPLYTPPSVQG-----TIARPGSTGGGNWQGAAVDPATGYMYVPSRNAFAI 514          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A7X3QD39_9BACT (PQQ-binding-like beta-propeller repeat protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X3QD39_9BACT)

HSP 1 Score: 181 bits (459), Expect = 2.670e-51
Identity = 86/132 (65.15%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPAT-MPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGN-NGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            ++KQG+ +VFDRVTGEPVWPIEE  VP  T +PG+V S TQP P+KP PFEYQG+ I+DLIDFTPE+R+ AV+A+  F +GPL+TPP  A DG   GTIQRP + GGANW GAGVDP+TG+LYVPS+N +S+
Sbjct:  406 VSKQGFVYVFDRVTGEPVWPIEERPVPQETNLPGEVPSATQPFPTKPPPFEYQGVSIDDLIDFTPEIRQMAVEAVRDFRLGPLYTPPLRAVDGGVQGTIQRPAIDGGANWGGAGVDPETGLLYVPSQNRFSV 537          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A7C7SQF8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C7SQF8_9BACT)

HSP 1 Score: 179 bits (453), Expect = 3.240e-51
Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPAT-MPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGNNGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            I+KQG+ +VFDRVTGEPVWPIEE  VP  T +PG+   PTQP P++P PFEYQG  I+DL+DFTPE+R+ A++A+EGF +GPLFTP SL+G     TIQRP  GGGANW GAGVDP+TG+LYVPS N++S+
Sbjct:  392 ISKQGFLYVFDRVTGEPVWPIEERPVPTDTDIPGEQVWPTQPFPTRPAPFEYQGATIDDLVDFTPEIRQMAIEAVEGFRLGPLFTPQSLSG-----TIQRPSSGGGANWSGAGVDPETGMLYVPSSNAFSL 517          
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Match: A0A3D4FQN9_9BACT (Pyrroloquinoline quinone-dependent dehydrogenase (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3D4FQN9_9BACT)

HSP 1 Score: 176 bits (447), Expect = 4.530e-51
Identity = 85/132 (64.39%), Postives = 104/132 (78.79%), Query Frame = 1
Query:    1 ITKQGYCFVFDRVTGEPVWPIEECDVPPAT-MPGDVASPTQPVPSKPEPFEYQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDG-NNGTIQRPGLGGGANWPGAGVDPDTGILYVPSRNSYSI 390
            ++KQG+ + FDRVTGEPVWPIEE  VP  T MPG+V + TQP P+KP PF+YQG+ I+DL+DFTPELR+ A++A++GFTIGPLFTPP+   DG   GTI RP  GG A W GA VDPDTG+LYVPSRN  S+
Sbjct:  138 VSKQGFVYTFDRVTGEPVWPIEERPVPQETNMPGEVPAATQPFPTKPAPFDYQGVTIDDLVDFTPELRQMAIEAVDGFTIGPLFTPPTRPIDGVTKGTIMRPPPGGTAGWAGAAVDPDTGMLYVPSRNRVSV 269          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124890.5058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X3TYR4_9BACT1.130e-6069.47PQQ-binding-like beta-propeller repeat protein n=1... [more]
A0A2E8E1X7_9BACT4.470e-5566.41Pyrroloquinoline quinone-dependent dehydrogenase n... [more]
A0A831T069_9BACT4.860e-5568.70Pyrroloquinoline quinone-dependent dehydrogenase n... [more]
A0A321LBF1_9BACT1.120e-5366.41Pyrroloquinoline quinone-dependent dehydrogenase n... [more]
A0A2V8FPU7_9BACT1.410e-5166.41Pyrroloquinoline quinone-dependent dehydrogenase n... [more]
A0A2V8B8S1_9BACT1.570e-5166.41Pyrroloquinoline quinone-dependent dehydrogenase n... [more]
A0A1F2V7F5_9BACT2.520e-5166.15Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A7X3QD39_9BACT2.670e-5165.15PQQ-binding-like beta-propeller repeat protein n=1... [more]
A0A7C7SQF8_9BACT3.240e-5164.89Uncharacterized protein (Fragment) n=1 Tax=Acidoba... [more]
A0A3D4FQN9_9BACT4.530e-5164.39Pyrroloquinoline quinone-dependent dehydrogenase (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124890contigM-pyrifera_M_contig124890:97..489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score153.7
Seed ortholog evalue6e-35
Seed eggNOG ortholog247633.GP2143_17886
KEGG rclassRC00066
KEGG koko:K00117
KEGG ReactionR06620
KEGG Pathwayko00030,ko01100,ko01110,ko01130,map00030,map01100,map01110,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dehydrogenase
EggNOG OGs1MUQX@1224,1RN5D@1236,COG4993@1,COG4993@2
EC1.1.5.2
COG Functional cat.G
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815765.7716715-CDS-M-pyrifera_M_contig124890:96..4891622815765.7716715-CDS-M-pyrifera_M_contig124890:96..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124890 97..489 -
1692277559.1498792-CDS-M-pyrifera_M_contig124890:96..4891692277559.1498792-CDS-M-pyrifera_M_contig124890:96..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124890 97..489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124890.5058.1prot_M-pyrifera_M_contig124890.5058.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124890 97..489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124890.5058.1

>prot_M-pyrifera_M_contig124890.5058.1 ID=prot_M-pyrifera_M_contig124890.5058.1|Name=mRNA_M-pyrifera_M_contig124890.5058.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
ITKQGYCFVFDRVTGEPVWPIEECDVPPATMPGDVASPTQPVPSKPEPFE
YQGIEIEDLIDFTPELREQAVKAIEGFTIGPLFTPPSLAGDGNNGTIQRP
GLGGGANWPGAGVDPDTGILYVPSRNSYSIA
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mRNA from alignment at M-pyrifera_M_contig124890:97..489-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124890.5058.1 ID=mRNA_M-pyrifera_M_contig124890.5058.1|Name=mRNA_M-pyrifera_M_contig124890.5058.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig124890:97..489- (Macrocystis pyrifera P11B4 male)
ATCACCAAGCAGGGTTATTGTTTTGTATTTGACCGTGTCACCGGCGAACC GGTCTGGCCGATCGAAGAGTGTGACGTGCCGCCCGCGACAATGCCCGGCG ATGTTGCGTCACCAACCCAACCCGTTCCAAGCAAACCGGAACCATTCGAG TACCAAGGCATCGAGATTGAAGACTTGATCGACTTTACGCCGGAGCTTCG CGAACAGGCGGTCAAAGCCATCGAAGGTTTTACGATCGGCCCGCTGTTTA CTCCGCCTTCTTTAGCAGGCGACGGAAACAATGGCACGATCCAACGTCCC GGTCTTGGCGGTGGCGCGAATTGGCCCGGTGCGGGCGTCGATCCGGACAC CGGAATCCTATACGTCCCTTCGCGCAACTCGTATTCCATCGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124890:97..489-

>mRNA_M-pyrifera_M_contig124890.5058.1 ID=mRNA_M-pyrifera_M_contig124890.5058.1|Name=mRNA_M-pyrifera_M_contig124890.5058.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig124890:97..489- (Macrocystis pyrifera P11B4 male)
ATCACCAAGCAGGGTTATTGTTTTGTATTTGACCGTGTCACCGGCGAACC
GGTCTGGCCGATCGAAGAGTGTGACGTGCCGCCCGCGACAATGCCCGGCG
ATGTTGCGTCACCAACCCAACCCGTTCCAAGCAAACCGGAACCATTCGAG
TACCAAGGCATCGAGATTGAAGACTTGATCGACTTTACGCCGGAGCTTCG
CGAACAGGCGGTCAAAGCCATCGAAGGTTTTACGATCGGCCCGCTGTTTA
CTCCGCCTTCTTTAGCAGGCGACGGAAACAATGGCACGATCCAACGTCCC
GGTCTTGGCGGTGGCGCGAATTGGCCCGGTGCGGGCGTCGATCCGGACAC
CGGAATCCTATACGTCCCTTCGCGCAACTCGTATTCCATCGCAATCACCA
AGCAGGGTTATTGTTTTGTATTTGACCGTGTCACCGGCGAACCGGTCTGG
CCGATCGAAGAGTGTGACGTGCCGCCCGCGACAATGCCCGGCGATGTTGC
GTCACCAACCCAACCCGTTCCAAGCAAACCGGAACCATTCGAGTACCAAG
GCATCGAGATTGAAGACTTGATCGACTTTACGCCGGAGCTTCGCGAACAG
GCGGTCAAAGCCATCGAAGGTTTTACGATCGGCCCGCTGTTTACTCCGCC
TTCTTTAGCAGGCGACGGAAACAATGGCACGATCCAACGTCCCGGTCTTG
GCGGTGGCGCGAATTGGCCCGGTGCGGGCGTCGATCCGGACACCGGAATC
CTATACGTCCCTTCGCGCAACTCGTATTCCATCGCA
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