mRNA_M-pyrifera_M_contig124707.5030.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124707.5030.1
Unique NamemRNA_M-pyrifera_M_contig124707.5030.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A813BXV4_9DINO (Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BXV4_9DINO)

HSP 1 Score: 147 bits (371), Expect = 2.840e-40
Identity = 72/136 (52.94%), Postives = 107/136 (78.68%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F   D  +A ILA  AGIALRN  L++++R S+ +VRA+IE++++++    S++ I SL+F++T RAP+LV+A+RCTFFLA+H+  ELW MQGDV++RIP+DKG+AG VAT+ K + IKDAY+D RF+++ D K+G
Sbjct:  127 FSDMDVEVANILAAQAGIALRNAELYKTSRRSQEKVRALIEVIKSMY----SNLGINSLMFTITQRAPALVDAERCTFFLANHKSKELWAMQGDVDIRIPIDKGIAGAVATSGKMITIKDAYEDDRFNQAFDKKSG 258          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A7S1C5Y3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5Y3_9STRA)

HSP 1 Score: 134 bits (338), Expect = 8.390e-35
Identity = 67/136 (49.26%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F   DE +  IL   AG+ALRN  L+  A  S  +VR ++E++RA+H     ++ I SL+F++T RA ++V+ADRCTFFLA+H   ELW MQG+V++RIPMDKG+AG VAT+ + +NI DAY+D RF++ +D  +G
Sbjct:  235 FSEIDEEILGILCAQAGVALRNADLYTLAVKSHEKVRGLLEVIRAMH----DNLGINSLMFTITQRAHTIVDADRCTFFLANHASKELWAMQGEVDIRIPMDKGIAGAVATSGEMINIHDAYEDSRFNQEVDRASG 366          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A5A8C8D5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8D5_CAFRO)

HSP 1 Score: 133 bits (335), Expect = 2.970e-34
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFD-KSIDAKTG 408
            F   DES+  +L+LH G+ALRNV +FESA  +RA+  A + LVRALH   PS+    SL+FS+ ++ P +V+A+RC+ FLADH+  ELW +QG+V+VR+PMD+G  G VAT + TLN+ DAY D R+  +++D K+G
Sbjct:  251 FTDADESLCAMLSLHIGVALRNVMVFESAVRARAKTDATLSLVRALHESAPSA---SSLMFSIHSKTPRIVDAERCSLFLADHQHSELWAIQGEVDVRMPMDRGFIGHVATTKATLNVPDAYADARWSGEAMDKKSG 384          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A812PPD6_9DINO (MET1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812PPD6_9DINO)

HSP 1 Score: 133 bits (335), Expect = 1.480e-33
Identity = 69/137 (50.36%), Postives = 99/137 (72.26%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFD-KSIDAKTG 408
            F   DES+  +L+LH G+ALRNV +FESA  +RA+  A + LVRALH   PS+    SL+FS+ ++ P +V+A+RC+ FLADH+  ELW +QG+V+VR+PMD+G  G VAT + TLN+ DAY D R+  +++D K+G
Sbjct:  760 FTDADESLCAMLSLHIGVALRNVMVFESAVRARAKTDATLSLVRALHESAPSA---SSLMFSIHSKTPRIVDAERCSLFLADHQHSELWAIQGEVDVRMPMDRGFIGHVATTKATLNVPDAYADARWSGEAMDKKSG 893          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A7S1UDT6_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDT6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.800e-32
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F   DE +  IL   AGI L+N  LF     SR+R R++++++ AL  D    + + SLLF++T  AP +V+ADR T FL D RD ELW+MQGDVN+R P  +G+AG VAT   T+NI +AY+D RF++ +D  TG
Sbjct:  243 FTETDEGILEILCSQAGICLQNADLFSQTERSRSRFRSLLDIINALQGD----MGLSSLLFTMTREAPRVVDADRATIFLVDERDDELWSMQGDVNMRFPRGQGIAGSVATTGSTINIPEAYEDDRFNQGVDKSTG 374          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A2R5GEK1_9STRA (cGMP-specific 3',5'-cyclic phosphodiesterase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEK1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.760e-31
Identity = 62/136 (45.59%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F   DE M  ILA  AGIAL N +L+++  +S+ +V++++++++A+H    S++ + SLLF++T RA  LV ADRCT FL D    EL ++QG+VN+R+PMDKG+AG    N + +NI DAY+D RF++ +D K+G
Sbjct:  279 FSDVDEEMVGILAAQAGIALNNASLYQNMASSQRKVQSLLDIIQAMH----SNLGVNSLLFTITQRAHELVEADRCTMFLLDKTAKELMSLQGEVNLRMPMDKGIAGECCINNEIINIPDAYEDPRFNQEVDKKSG 410          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A7S2WCX9_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WCX9_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.070e-30
Identity = 61/127 (48.03%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRF 381
            F   DE M  ILA  A IAL N  L+++  AS+A+V++++++++A+H    S++ I SL+F++T RA  LV ADRCT FL D    EL ++QG+VN+RIPMDKG+AG   T  K +NI +AY+D RF
Sbjct:   94 FTPVDEEMIAILAAQASIALNNANLYQTMSASQAKVQSLLDIIQAMH----SNLGINSLMFTITQRAHELVEADRCTMFLLDKAAKELMSLQGEVNLRIPMDKGIAGECCTTNKVINIPEAYEDSRF 216          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A0W8DKU2_PHYNI (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKU2_PHYNI)

HSP 1 Score: 116 bits (291), Expect = 9.720e-29
Identity = 57/136 (41.91%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F  EDE    ILA  AG+AL N      A  +R RV+ ++ +V+ +H D    +   SL+F+++TR    VN+DRCT ++ D    ELWT+QG+VN+R+P+++G+AG VA N + +N+++AY D RF+K  D K G
Sbjct:  120 FSDEDEEFLTILAAQAGVALNNADTHTVACIARERVKDVLSIVQDMHRD----LGFISLMFTISTRVQRFVNSDRCTLYIVDRAKNELWTLQGEVNIRVPINQGIAGAVAMNNEAINLENAYDDPRFNKDFDQKLG 251          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A7S2S2T4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2T4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.050e-28
Identity = 61/136 (44.85%), Postives = 91/136 (66.91%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            F  EDE +   L+L  GI LRN  L E +  +  +V +++++VR+LH    S++ I SL+F++T R PSLV+A+ CT F+ D +  ELW++QG + +R+PM KG+ G+ AT  +TLNI DA+QD RF+   D KTG
Sbjct:  211 FTREDEVLMDHLSLQLGIILRNQLLKEVSERAHKQVVSLVDIVRSLH----SNMGINSLMFTITERTPSLVDAEVCTLFVVDRKHKELWSLQGVMEIRVPMSKGLVGYTATTGETLNILDAHQDDRFNTEYDIKTG 342          
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Match: A0A812Z9E9_SYMMI (PDE11A protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Z9E9_SYMMI)

HSP 1 Score: 113 bits (282), Expect = 3.670e-28
Identity = 58/136 (42.65%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    1 FGAEDESMARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIPSLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAGFVATNRKTLNIKDAYQDHRFDKSIDAKTG 408
            FG  DE +  +L+  AGIAL+N  LF  +  SR + R++++++RA+  +    + + SL+F++T R   +V+ADRCT FL D+    L+ MQG+VN+RIPMD G+AG VA+     NI DAY++ +F+++ID K+G
Sbjct:   24 FGQIDEDVMNMLSTQAGIALQNANLFRISEDSRDKFRSLLDIIRAMQGE----MGVNSLIFTITQRTTRVVDADRCTLFLVDNVHKGLFAMQGEVNIRIPMDSGIAGSVASTGIVANIPDAYENPQFNQAIDKKSG 155          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124707.5030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BXV4_9DINO2.840e-4052.94Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S1C5Y3_9STRA8.390e-3549.26Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5A8C8D5_CAFRO2.970e-3450.36Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812PPD6_9DINO1.480e-3350.36MET1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1UDT6_9STRA4.800e-3247.06Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A2R5GEK1_9STRA4.760e-3145.59cGMP-specific 3',5'-cyclic phosphodiesterase n=1 T... [more]
A0A7S2WCX9_9STRA1.070e-3048.03Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A0W8DKU2_PHYNI9.720e-2941.91UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A7S2S2T4_9STRA2.050e-2844.85Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A812Z9E9_SYMMI3.670e-2842.65PDE11A protein n=1 Tax=Symbiodinium microadriaticu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124707contigM-pyrifera_M_contig124707:58..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.4e-22
Seed eggNOG ortholog4787.PITG_17975T0
KEGG rclassRC00296
KEGG koko:K13294
KEGG ReactionR00191
KEGG Pathwayko00230,map00230
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.GAF domain
EggNOG OGs3Q7CQ@4776,KOG3689@1,KOG3689@2759
EC3.1.4.53
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size408
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.5968556-UTR-M-pyrifera_M_contig124707:57..781622815764.5968556-UTR-M-pyrifera_M_contig124707:57..78Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124707 58..78 +
1692277558.6598368-UTR-M-pyrifera_M_contig124707:57..781692277558.6598368-UTR-M-pyrifera_M_contig124707:57..78Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124707 58..78 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815764.6068764-CDS-M-pyrifera_M_contig124707:78..4651622815764.6068764-CDS-M-pyrifera_M_contig124707:78..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124707 79..465 +
1692277558.671582-CDS-M-pyrifera_M_contig124707:78..4651692277558.671582-CDS-M-pyrifera_M_contig124707:78..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124707 79..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124707.5030.1prot_M-pyrifera_M_contig124707.5030.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124707 79..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124707.5030.1

>prot_M-pyrifera_M_contig124707.5030.1 ID=prot_M-pyrifera_M_contig124707.5030.1|Name=mRNA_M-pyrifera_M_contig124707.5030.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
MARILALHAGIALRNVALFESARASRARVRAMIELVRALHADDPSSVSIP
SLLFSLTTRAPSLVNADRCTFFLADHRDGELWTMQGDVNVRIPMDKGVAG
FVATNRKTLNIKDAYQDHRFDKSIDAKTG
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mRNA from alignment at M-pyrifera_M_contig124707:58..465+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124707.5030.1 ID=mRNA_M-pyrifera_M_contig124707.5030.1|Name=mRNA_M-pyrifera_M_contig124707.5030.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig124707:58..465+ (Macrocystis pyrifera P11B4 male)
TTTGGGGCGGAGGACGAATCGATGGCTCGTATTTTGGCGTTGCATGCTGG GATTGCACTCCGGAATGTGGCATTGTTTGAGAGTGCGAGGGCAAGCAGAG CTAGGGTGAGGGCGATGATCGAGTTGGTGCGGGCATTGCATGCAGATGAC CCTTCCTCCGTCTCCATCCCCTCCCTCCTCTTCTCCCTCACCACAAGAGC GCCCTCCCTTGTCAATGCTGACAGATGCACTTTTTTCCTAGCGGACCACA GAGATGGGGAGCTGTGGACAATGCAAGGAGACGTCAACGTAAGGATCCCA ATGGACAAAGGGGTTGCAGGCTTTGTGGCCACAAACAGGAAAACCCTAAA CATCAAAGACGCCTACCAAGACCACAGGTTCGACAAATCCATCGACGCAA AAACCGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124707:58..465+

>mRNA_M-pyrifera_M_contig124707.5030.1 ID=mRNA_M-pyrifera_M_contig124707.5030.1|Name=mRNA_M-pyrifera_M_contig124707.5030.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig124707:58..465+ (Macrocystis pyrifera P11B4 male)
ATGGCTCGTATTTTGGCGTTGCATGCTGGGATTGCACTCCGGAATGTGGC
ATTGTTTGAGAGTGCGAGGGCAAGCAGAGCTAGGGTGAGGGCGATGATCG
AGTTGGTGCGGGCATTGCATGCAGATGACCCTTCCTCCGTCTCCATCCCC
TCCCTCCTCTTCTCCCTCACCACAAGAGCGCCCTCCCTTGTCAATGCTGA
CAGATGCACTTTTTTCCTAGCGGACCACAGAGATGGGGAGCTGTGGACAA
TGCAAGGAGACGTCAACGTAAGGATCCCAATGGACAAAGGGGTTGCAGGC
TTTGTGGCCACAAACAGGAAAACCCTAAACATCAAAGACGCCTACCAAGA
CCACAGGTTCGACAAATCCATCGACGCAAAAACCGGTATGGCTCGTATTT
TGGCGTTGCATGCTGGGATTGCACTCCGGAATGTGGCATTGTTTGAGAGT
GCGAGGGCAAGCAGAGCTAGGGTGAGGGCGATGATCGAGTTGGTGCGGGC
ATTGCATGCAGATGACCCTTCCTCCGTCTCCATCCCCTCCCTCCTCTTCT
CCCTCACCACAAGAGCGCCCTCCCTTGTCAATGCTGACAGATGCACTTTT
TTCCTAGCGGACCACAGAGATGGGGAGCTGTGGACAATGCAAGGAGACGT
CAACGTAAGGATCCCAATGGACAAAGGGGTTGCAGGCTTTGTGGCCACAA
ACAGGAAAACCCTAAACATCAAAGACGCCTACCAAGACCACAGGTTCGAC
AAATCCATCGACGCAAAAACCGGT
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