mRNA_M-pyrifera_M_contig124555.4991.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: D7G2S4_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S4_ECTSI) HSP 1 Score: 164 bits (415), Expect = 1.900e-45 Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 1
Query: 1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
+ RDLTINSLFYN+NTGT+EDYTGKGTSDLRLGLVRTPLP CETLLDDPLR LRAVRFASRLGF VHPELM AG DP+VHEALC KV R+
Sbjct: 272 FRRDLTINSLFYNVNTGTVEDYTGKGTSDLRLGLVRTPLPPCETLLDDPLRALRAVRFASRLGFRVHPELMEAGRDPKVHEALCMKVSRE 361
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: W7TAJ6_9STRA (Poly A polymerase, head domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAJ6_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.260e-31 Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RDLTIN+LFYN++TG IED+ G+G D+R G++RTPLPA TLLDDPLRVLRAVRFASRL F + EL+ A +DPRVH AL KV R+
Sbjct: 317 RDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRE 404
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A2V0NUI1_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NUI1_9CHLO) HSP 1 Score: 122 bits (307), Expect = 1.020e-30 Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RD T+N+LFYN+N G +ED TGKG +DLR GL+RTPLPA ET LDDPLRVLRAVRFA+R GFE+HPE++ A +V AL K+ R+
Sbjct: 139 RDFTVNALFYNLNAGAVEDLTGKGLTDLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFELHPEILEAAAGEKVRSALGGKISRE 226
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A4D9CTQ7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTQ7_9STRA) HSP 1 Score: 122 bits (306), Expect = 2.030e-30 Identity = 59/88 (67.05%), Postives = 71/88 (80.68%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RDLTIN+LFYN++TG IED+ G+G D+R G++RTPLPA TLLDDPLRVLRAVRFASRL F + EL+ A +DPRVH AL KV R+
Sbjct: 292 RDLTINALFYNLHTGQIEDFCGRGLRDMREGVIRTPLPALTTLLDDPLRVLRAVRFASRLAFSISDELVVAASDPRVHGALAHKVSRE 379
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A8K0TZ08_9AGAM (Uncharacterized protein n=1 Tax=Phlebopus sp. FC_14 TaxID=2615122 RepID=A0A8K0TZ08_9AGAM) HSP 1 Score: 120 bits (302), Expect = 4.590e-30 Identity = 56/88 (63.64%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RD+TINSLFYN++T ++EDYTGKG +DLR GL+RTPLP T LDDPLRV+R VRFASR GFE+ PEL +A D + EAL K+ R+
Sbjct: 150 RDITINSLFYNVHTRSVEDYTGKGLNDLRDGLIRTPLPPLRTFLDDPLRVIRCVRFASRFGFEMTPELKDAARDATIQEALSAKISRE 237
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A0D2MXN4_9CHLO (PolyA_pol domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXN4_9CHLO) HSP 1 Score: 120 bits (302), Expect = 4.820e-30 Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RD TIN+LFYN+N G +ED TG+G +DLR GL+RTPLPA ET LDDPLRVLRAVRFA+R GF++HPE++ A +V AL K+ R+
Sbjct: 143 RDFTINALFYNLNQGAVEDLTGRGLADLRAGLLRTPLPASETFLDDPLRVLRAVRFATRFGFDLHPEILQAAASDKVRTALGQKISRE 230
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A369K2Y1_HYPMA (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K2Y1_HYPMA) HSP 1 Score: 120 bits (300), Expect = 8.590e-30 Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRDGRG 279
RD T+N+LFYNI+T T+ED TGKG DLR GL+RTPLP ET LDDPLRVLR +RFASR GF++ PE++ A DP + +AL +KV R+ G
Sbjct: 155 RDTTVNALFYNIHTRTVEDLTGKGLDDLRSGLIRTPLPPRETFLDDPLRVLRCIRFASRYGFKIVPEVLEAAKDPLIQDALVSKVARERAG 245
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: D8PL51_SCHCM (PolyA_pol domain-containing protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8PL51_SCHCM) HSP 1 Score: 114 bits (285), Expect = 1.780e-29 Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 7 RDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
RD+TIN+LFYNI+ +ED+TGKG DLR G+VRTPLP ET LDDPLRVLR +RFA+R GF++ PEL +A D V EAL +K+ R+
Sbjct: 155 RDITINALFYNIHDRAVEDHTGKGLDDLRSGIVRTPLPPRETFLDDPLRVLRCLRFATRFGFDIVPELSDAAKDTVVQEALISKISRE 242
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A7J7IKC3_9RHOD (CCA tRNA nucleotidyltransferase, mitochondrial n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IKC3_9RHOD) HSP 1 Score: 112 bits (281), Expect = 2.140e-29 Identity = 58/90 (64.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query: 1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKVRRD 270
Y RDLTIN+LFYNINT +ED+T G DL G +RTPLP T LDDPLRVLRAVRFASR GF V P+L+ A + P+V EAL KV RD
Sbjct: 11 YRRDLTINALFYNINTEQVEDWTQMGLRDLTNGQIRTPLPPEITFLDDPLRVLRAVRFASRFGFTVVPDLIEAASVPQVQEALVKKVSRD 100
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Match: A0A835ZFM7_9STRA (PolyA_pol domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFM7_9STRA) HSP 1 Score: 118 bits (296), Expect = 3.480e-29 Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 1 YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLRVLRAVRFASRLGFEVHPELMNAGTDPRVHEALCTKV 261
Y RDLTIN+LFYNINTG +ED+TG+G +DL G++ TPLPA +TLLDDPLRVLR++RFASR F + +L+ A DP VH AL KV
Sbjct: 145 YRRDLTINALFYNINTGLVEDFTGRGLTDLAAGVISTPLPAVDTLLDDPLRVLRSIRFASRFNFNMSQDLLMACKDPEVHVALAQKV 231 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124555.4991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig124555.4991.1 >prot_M-pyrifera_M_contig124555.4991.1 ID=prot_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp YSRDLTINSLFYNINTGTIEDYTGKGTSDLRLGLVRTPLPACETLLDDPLback to top mRNA from alignment at M-pyrifera_M_contig124555:123..401+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig124555.4991.1 ID=mRNA_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig124555:123..401+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig124555:123..401+ >mRNA_M-pyrifera_M_contig124555.4991.1 ID=mRNA_M-pyrifera_M_contig124555.4991.1|Name=mRNA_M-pyrifera_M_contig124555.4991.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig124555:123..401+ (Macrocystis pyrifera P11B4 male)back to top |