mRNA_M-pyrifera_M_contig124427.4962.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124427.4962.1
Unique NamemRNA_M-pyrifera_M_contig124427.4962.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A2R8RPD2_DANRE (Uncharacterized protein n=1 Tax=Danio rerio TaxID=7955 RepID=A0A2R8RPD2_DANRE)

HSP 1 Score: 100 bits (248), Expect = 1.420e-25
Identity = 47/77 (61.04%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   31 RIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            RIAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G D
Sbjct:    4 RIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISIEILGFD 80
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A672MDD9_SINGR (GTP binding protein 2 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MDD9_SINGR)

HSP 1 Score: 100 bits (248), Expect = 2.240e-25
Identity = 47/77 (61.04%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   31 RIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            RIAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G D
Sbjct:    4 RIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISIEILGFD 80
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A3Q3MM37_9LABR (Uncharacterized protein n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3MM37_9LABR)

HSP 1 Score: 101 bits (251), Expect = 2.260e-25
Identity = 48/84 (57.14%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 DSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            DS+R   +IAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +
Sbjct:   36 DSDRNTRKIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFN 119
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A8C5NED7_9TELE (GTP-binding protein 2-like n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5NED7_9TELE)

HSP 1 Score: 99.8 bits (247), Expect = 3.870e-25
Identity = 47/84 (55.95%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 DSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            DS++   +IAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +
Sbjct:   15 DSDKTTRKIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFN 98
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A0B7AMG7_9EUPU (Tr-type G domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AMG7_9EUPU)

HSP 1 Score: 102 bits (253), Expect = 4.120e-25
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    4 MSDSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            + + N E  + AE ++ K L+ + F EVR+A+VGNVD GKSTLLGVL+ G LDNGRG+AR  +F+H+HEME+G+TS VG +I+G D
Sbjct:   32 LRERNAEEGKAAEFLLRKRLQSEDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGMARQKLFRHKHEMESGRTSSVGNDILGFD 117
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BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A673YXA4_SALTR (GTP-binding protein 2-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673YXA4_SALTR)

HSP 1 Score: 99.8 bits (247), Expect = 4.330e-25
Identity = 47/84 (55.95%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 DSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            DS+R   +I+EV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +
Sbjct:   20 DSDRNCRKISEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFN 103
[Close]
BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: UPI001C4AB498 (GTP-binding protein 2-like n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4AB498)

HSP 1 Score: 101 bits (251), Expect = 5.400e-25
Identity = 48/84 (57.14%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   10 DSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            DS+R   +IAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +
Sbjct:   78 DSDRNTRKIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFN 161
[Close]
BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A8C2Z7I8_CYCLU (Uncharacterized protein n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2Z7I8_CYCLU)

HSP 1 Score: 97.1 bits (240), Expect = 2.700e-24
Identity = 45/77 (58.44%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:   31 RIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD 261
            +IAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +
Sbjct:    4 KIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFN 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A6P8IXF6_ACTTE (GTP-binding protein 1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IXF6_ACTTE)

HSP 1 Score: 105 bits (261), Expect = 2.860e-24
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    4 MSDSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLDG 264
            + + N E  ++ E ++ K LE   F EVR+A+VGNVD GKSTLLGVL+ G LDNGRG+AR  +F+H+HEME+G+TS VG +I+G DG
Sbjct:  129 LREKNAEQGKVGEFLIRKKLEENDFMEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGMARQRLFRHKHEMESGRTSSVGNDILGFDG 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Match: A0A668TIN8_OREAU (GTP binding protein 2b n=1 Tax=Oreochromis aureus TaxID=47969 RepID=A0A668TIN8_OREAU)

HSP 1 Score: 103 bits (256), Expect = 2.970e-24
Identity = 52/96 (54.17%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   10 DSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKGGLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLD--GYVLSLHESQ 291
            DS+R   +IAEV+V K+ + Q+F ++R+A++GNVD GKSTLLGVL++G LDNGRG ARLN+F+H HE++TG+TS +  EI+G +  G V++  ES+
Sbjct:   62 DSDRNTRKIAEVLVRKVPDDQQFLDLRVAVLGNVDSGKSTLLGVLTQGELDNGRGRARLNLFRHLHEIQTGRTSSISFEILGFNSKGEVVNYSESR 157
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124427.4962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R8RPD2_DANRE1.420e-2561.04Uncharacterized protein n=1 Tax=Danio rerio TaxID=... [more]
A0A672MDD9_SINGR2.240e-2561.04GTP binding protein 2 n=1 Tax=Sinocyclocheilus gra... [more]
A0A3Q3MM37_9LABR2.260e-2557.14Uncharacterized protein n=1 Tax=Labrus bergylta Ta... [more]
A0A8C5NED7_9TELE3.870e-2555.95GTP-binding protein 2-like n=1 Tax=Gouania willden... [more]
A0A0B7AMG7_9EUPU4.120e-2555.81Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A673YXA4_SALTR4.330e-2555.95GTP-binding protein 2-like n=1 Tax=Salmo trutta Ta... [more]
UPI001C4AB4985.400e-2557.14GTP-binding protein 2-like n=1 Tax=Plectropomus le... [more]
A0A8C2Z7I8_CYCLU2.700e-2458.44Uncharacterized protein n=1 Tax=Cyclopterus lumpus... [more]
A0A6P8IXF6_ACTTE2.860e-2456.32GTP-binding protein 1-like n=1 Tax=Actinia tenebro... [more]
A0A668TIN8_OREAU2.970e-2454.17GTP binding protein 2b n=1 Tax=Oreochromis aureus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124427contigM-pyrifera_M_contig124427:73..363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score102.1
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog106582.XP_004572690.1
Preferred nameGTPBP2
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002576,GO:0003674,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0017076,GO:0019001,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032940,GO:0034774,GO:0035639,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097159,GO:0097367,GO:0097708,GO:0099503,GO:1901265,GO:1901363
EggNOG free text desc.GTP binding protein 2
EggNOG OGs3ARE2@33154,3BAIQ@33208,3CUAB@33213,47YZG@7711,48VFK@7742,49WTA@7898,COG5258@1,KOG1143@2759
COG Functional cat.J
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.41705-CDS-M-pyrifera_M_contig124427:72..3601622815761.41705-CDS-M-pyrifera_M_contig124427:72..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124427 73..360 -
1692277557.0812552-CDS-M-pyrifera_M_contig124427:72..3601692277557.0812552-CDS-M-pyrifera_M_contig124427:72..360Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124427 73..360 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815761.430816-UTR-M-pyrifera_M_contig124427:360..3631622815761.430816-UTR-M-pyrifera_M_contig124427:360..363Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124427 361..363 -
1692277557.0973823-UTR-M-pyrifera_M_contig124427:360..3631692277557.0973823-UTR-M-pyrifera_M_contig124427:360..363Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig124427 361..363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124427.4962.1prot_M-pyrifera_M_contig124427.4962.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124427 73..360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124427.4962.1

>prot_M-pyrifera_M_contig124427.4962.1 ID=prot_M-pyrifera_M_contig124427.4962.1|Name=mRNA_M-pyrifera_M_contig124427.4962.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MSDSNREGCRIAEVVVAKLLEGQRFTEVRIAIVGNVDVGKSTLLGVLSKG
GLDNGRGLARLNVFKHRHEMETGQTSDVGREIVGLDGYVLSLHESQ
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mRNA from alignment at M-pyrifera_M_contig124427:73..363-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124427.4962.1 ID=mRNA_M-pyrifera_M_contig124427.4962.1|Name=mRNA_M-pyrifera_M_contig124427.4962.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig124427:73..363- (Macrocystis pyrifera P11B4 male)
TTCATGTCTGACAGCAACAGGGAGGGATGTCGCATTGCTGAGGTTGTTGT
AGCCAAACTTCTGGAGGGGCAGCGCTTCACAGAAGTCCGCATTGCTATCG
TGGGCAACGTAGATGTGGGCAAGAGCACTCTGTTGGGCGTTCTCTCCAAA
GGAGGCCTCGACAACGGCAGAGGCCTCGCTCGGCTAAACGTCTTCAAGCA
CCGCCACGAGATGGAAACTGGCCAGACGTCCGACGTTGGAAGAGAGATCG
TTGGGCTCGACGGGTACGTGCTATCTCTCCACGAGTCACAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124427:73..363-

>mRNA_M-pyrifera_M_contig124427.4962.1 ID=mRNA_M-pyrifera_M_contig124427.4962.1|Name=mRNA_M-pyrifera_M_contig124427.4962.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig124427:73..363- (Macrocystis pyrifera P11B4 male)
ATGTCTGACAGCAACAGGGAGGGATGTCGCATTGCTGAGGTTGTTGTAGC
CAAACTTCTGGAGGGGCAGCGCTTCACAGAAGTCCGCATTGCTATCGTGG
GCAACGTAGATGTGGGCAAGAGCACTCTGTTGGGCGTTCTCTCCAAAGGA
GGCCTCGACAACGGCAGAGGCCTCGCTCGGCTAAACGTCTTCAAGCACCG
CCACGAGATGGAAACTGGCCAGACGTCCGACGTTGGAAGAGAGATCGTTG
GGCTCGACGGGTACGTGCTATCTCTCCACGAGTCACAAATGTCTGACAGC
AACAGGGAGGGATGTCGCATTGCTGAGGTTGTTGTAGCCAAACTTCTGGA
GGGGCAGCGCTTCACAGAAGTCCGCATTGCTATCGTGGGCAACGTAGATG
TGGGCAAGAGCACTCTGTTGGGCGTTCTCTCCAAAGGAGGCCTCGACAAC
GGCAGAGGCCTCGCTCGGCTAAACGTCTTCAAGCACCGCCACGAGATGGA
AACTGGCCAGACGTCCGACGTTGGAAGAGAGATCGTTGGGCTCGACGGGT
ACGTGCTATCTCTCCACGAGTCACAA
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