mRNA_M-pyrifera_M_contig124178.4920.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124178.4920.1
Unique NamemRNA_M-pyrifera_M_contig124178.4920.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A2P6NLR2_9EUKA (Importin N-terminal domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NLR2_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 4.550e-20
Identity = 57/160 (35.62%), Postives = 96/160 (60.00%), Query Frame = 1
Query:    1 VRVSDQDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFL-AGPF----AEMYYKMALRAFTAKTSESVQLSACELLECV 465
            +++ +++N  + SA+  LECL AIQT+L +I  + E   P+  VL P++  +L P+  ++FE+ +K++TF+TYF+  I   ++ L P+     +    D++  +L  LDN +S+S + FL AGP+    +EMY K+ L       SES  L AC+L+E V
Sbjct:  602 IKICNENNDEDDSAITALECLGAIQTILEAISGRPELYPPIEEVLYPLLQVTLQPDLADFFEEGVKIITFITYFSNEISPRMWSLFPVLHDRFQE-CSDFIQDILNPLDNYISRSTETFLTAGPYLPMVSEMYKKLILNT---DESESNCLDACKLIEAV 757          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: L8GGA7_ACACA (Importin beta domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GGA7_ACACA)

HSP 1 Score: 84.0 bits (206), Expect = 6.650e-16
Identity = 44/136 (32.35%), Postives = 80/136 (58.82%), Query Frame = 1
Query:    1 VRVSDQDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLAGPFAEMYYKMALRAF 408
            VR++  D  ++++A+   ECL AI+T+L SI K  +    V  +L+P++ R L  + +E+ E+ LK++ ++T++   I   ++QL P+  +  + WA D++  ++  LDN +S+  D FLA P    Y KM L  +
Sbjct:  578 VRLASADEEDDAAAMAATECLGAIETILDSITKTPDLFPQVEPLLVPLLVRLLDDDAMEFMEETLKIMAYLTFYGRGISPAMWQLFPLLYKAFDGWATDWMDQIIIPLDNYISRGNDVFLANPD---YLKMVLSMY 710          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A2G5CXA2_AQUCA (Importin N-terminal domain-containing protein n=4 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CXA2_AQUCA)

HSP 1 Score: 82.0 bits (201), Expect = 3.120e-15
Identity = 41/115 (35.65%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   19 DNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLA 363
            D G++  AL  + CL+AI T+L S+ K     + +   LLP++ R L+ +  E FE++L++V++MT+F+ +I  +++ L P+ ++ +  WA D+ P++L  LDN +S+S   FLA
Sbjct:  601 DEGDDPGALAAVGCLRAISTILESVSKLPNLFLEIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLDMWSLWPLMMEALADWAIDFFPNILVPLDNYISRSTAHFLA 715          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A830CWV7_9LAMI (Importin beta-like sad2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CWV7_9LAMI)

HSP 1 Score: 81.6 bits (200), Expect = 4.250e-15
Identity = 41/114 (35.96%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   19 DNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFL 360
            + G++  AL  + CL+AI T+L S+ +  +  V V   LLP+++R L+ +  E FE++L++V++MT+F+ +I  E++ L P+ ++ +  WA D+ P++L  LDN +S+S   FL
Sbjct:  541 EEGDDPGALAAVGCLRAISTILESVSRLPDLFVHVEPTLLPIMSRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRSTAHFL 654          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A2Z7B626_9LAMI (Putative importin-7 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B626_9LAMI)

HSP 1 Score: 81.6 bits (200), Expect = 4.260e-15
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   19 DNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFL 360
            D G++  AL  + CL+AI T+L SI +     V +   LLP++ R L+ +  E FE++L++V++MT+F+ +I  E++ L P+ ++ +  WA D+ P++L  LDN +S+S   FL
Sbjct:  601 DEGDDPGALAAVGCLRAISTILESISRLPHLFVHIEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLEMWSLWPLMMEALADWAIDFFPNILVPLDNYISRSTAHFL 714          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A200R7Z3_9MAGN (Importin-beta n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200R7Z3_9MAGN)

HSP 1 Score: 81.6 bits (200), Expect = 4.260e-15
Identity = 47/156 (30.13%), Postives = 90/156 (57.69%), Query Frame = 1
Query:   10 SDQDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLA---GPFAEMYYKMALRAFTAKTSESVQLS-ACELLECV 465
            +D D  ++S AL  + CL+AI T+L S+ +  +  + +   LLP++ R L+ +  E +E++L++V++MT+F+ +I  +++ L P+ ++ +  WA D+ P++L  LDN +S+S   FL      + +  + M     T K  E   +  A +L+E V
Sbjct:  599 ADDDEADDSGALAAVGCLRAISTILESVSRLPDYFIKIEPTLLPIMRRMLTSDGQEVYEEVLEIVSYMTFFSPTISLDMWSLWPLMMEALGEWAIDFFPNILVPLDNYISRSTAHFLTCKDPDYQQSLWNMLSSVMTDKNMEDNDIEPAPKLIEVV 754          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: W1PWV1_AMBTC (Importin N-terminal domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PWV1_AMBTC)

HSP 1 Score: 80.9 bits (198), Expect = 7.890e-15
Identity = 50/156 (32.05%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   10 SDQDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLA---GPFAEMYYKMALRAFTAKTSESVQLS-ACELLECV 465
            +D+D G+ES AL  + CL+AI T+L S+ +       V  +LLP++ R L+ +  E FE++L++V++MT+F+ +I  +++ L P+ ++ ++ WA D+  ++L  LDN +S+S   FL      + +  +KM       K  E   +  A +L+E V
Sbjct:  601 ADED-GDESGALAAVGCLRAISTILESVSRLPHLFPQVEPILLPIMQRMLTTDGQEVFEEVLEIVSYMTFFSPTISLDMWSLWPLMMEALDDWAVDFFENILVPLDNYISRSTAHFLTCKDPDYQQSLWKMLSSVMADKNMEDHDIEPAPKLIEAV 755          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A2K2BN81_POPTR (Importin N-terminal domain-containing protein n=8 Tax=Saliceae TaxID=238069 RepID=A0A2K2BN81_POPTR)

HSP 1 Score: 80.9 bits (198), Expect = 7.890e-15
Identity = 44/127 (34.65%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   19 DNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLAGPFAEMYYKMAL 399
            D  ++  AL  + CL+AI T+L S+ +  +  V V   LLP++ R L+ +  E FE++L++V++MT+F+  I  E++ L P+ ++ +  WA D+ P++L  LDN +S+    FLA    E+ Y+ +L
Sbjct:  601 DEADDPGALAAVGCLRAISTILESVSRLPDLFVQVEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPIISTEMWSLWPLMIEALAEWAIDFFPNILVPLDNYISRGTAHFLA--CRELDYQQSL 725          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: UPI001CC41084 (importin beta-like SAD2 isoform X1 n=3 Tax=Proteaceae TaxID=4328 RepID=UPI001CC41084)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-14
Identity = 40/114 (35.09%), Postives = 72/114 (63.16%), Query Frame = 1
Query:   19 DNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFL 360
            D  ++  AL  + CL+AI T+L S+ +     V +   LLP++ R L+ +  E FE++L++V++MT+F+ +I  E++ L P+  + +  WA D+ P++L  LDN +S+S + FL
Sbjct:  602 DEADDPGALAAVGCLRAISTILESVSRLPHLFVQIEPTLLPIMRRMLTSDGQEIFEEVLEIVSYMTFFSPTISMEMWSLWPVMTEALTDWAIDFFPNILVPLDNYISRSTEHFL 715          
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Match: A0A803Q5R9_CANSA (Importin N-terminal domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803Q5R9_CANSA)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-14
Identity = 40/116 (34.48%), Postives = 75/116 (64.66%), Query Frame = 1
Query:   16 QDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIARSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDYLPHMLPSLDNLVSKSKDFFLA 363
            +++ ++S AL  + CL+AI T+L S+ +     V V   LLP++ R L+ +  E FE++L++V++MT+F+ +I  +++ L P+ ++ +  WA D+ P++L  LDN +S+    FLA
Sbjct:  601 EEDADDSGALAAVGCLRAISTILESVSRLPHLFVQVEPTLLPIMRRMLTTDGQEVFEEVLEIVSYMTFFSPTISLDMWSLWPLMMEALNDWAIDFFPNILVPLDNYISRGTAHFLA 716          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124178.4920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NLR2_9EUKA4.550e-2035.63Importin N-terminal domain-containing protein n=1 ... [more]
L8GGA7_ACACA6.650e-1632.35Importin beta domain containing protein n=1 Tax=Ac... [more]
A0A2G5CXA2_AQUCA3.120e-1535.65Importin N-terminal domain-containing protein n=4 ... [more]
A0A830CWV7_9LAMI4.250e-1535.96Importin beta-like sad2 n=1 Tax=Phtheirospermum ja... [more]
A0A2Z7B626_9LAMI4.260e-1536.84Putative importin-7 n=1 Tax=Dorcoceras hygrometric... [more]
A0A200R7Z3_9MAGN4.260e-1530.13Importin-beta n=1 Tax=Macleaya cordata TaxID=56857... [more]
W1PWV1_AMBTC7.890e-1532.05Importin N-terminal domain-containing protein n=1 ... [more]
A0A2K2BN81_POPTR7.890e-1534.65Importin N-terminal domain-containing protein n=8 ... [more]
UPI001CC410841.080e-1435.09importin beta-like SAD2 isoform X1 n=3 Tax=Proteac... [more]
A0A803Q5R9_CANSA1.080e-1434.48Importin N-terminal domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124178contigM-pyrifera_M_contig124178:3..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.6
Seed ortholog evalue3.4e-13
Seed eggNOG ortholog218851.Aquca_034_00052.1
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008565,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031967,GO:0031975,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0040029,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070922,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0072594
EggNOG free text desc.importin-7 homolog
EggNOG OGs37HKY@33090,3GDAN@35493,COG4581@1,KOG1991@2759
COG Functional cat.UY
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815759.077583-CDS-M-pyrifera_M_contig124178:2..1601622815759.077583-CDS-M-pyrifera_M_contig124178:2..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124178 3..160 -
1692277555.9348001-CDS-M-pyrifera_M_contig124178:2..1601692277555.9348001-CDS-M-pyrifera_M_contig124178:2..160Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124178 3..160 -
1622815759.0889094-CDS-M-pyrifera_M_contig124178:212..5191622815759.0889094-CDS-M-pyrifera_M_contig124178:212..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124178 213..519 -
1692277555.9475155-CDS-M-pyrifera_M_contig124178:212..5191692277555.9475155-CDS-M-pyrifera_M_contig124178:212..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124178 213..519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124178.4920.1prot_M-pyrifera_M_contig124178.4920.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124178 3..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124178.4920.1

>prot_M-pyrifera_M_contig124178.4920.1 ID=prot_M-pyrifera_M_contig124178.4920.1|Name=mRNA_M-pyrifera_M_contig124178.4920.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
VRVSDQDNGNESSALVGLECLKAIQTVLVSIRKKTEALVPVIHVLLPMIA
RSLSPNYLEYFEDILKVVTFMTYFTESIPNEVFQLIPIYLQNVETWAQDY
LPHMLPSLDNLVSKSKDFFLAGPFAEMYYKMALRAFTAKTSESVQLSACE
LLECV
back to top

mRNA from alignment at M-pyrifera_M_contig124178:3..519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124178.4920.1 ID=mRNA_M-pyrifera_M_contig124178.4920.1|Name=mRNA_M-pyrifera_M_contig124178.4920.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=517bp|location=Sequence derived from alignment at M-pyrifera_M_contig124178:3..519- (Macrocystis pyrifera P11B4 male)
GTAAGAGTCTCCGACCAGGACAATGGCAACGAGAGTAGTGCCCTGGTGGG TCTGGAGTGCCTCAAGGCCATCCAGACGGTGCTGGTCTCGATCAGGAAGA AGACAGAGGCACTTGTGCCGGTGATCCACGTGCTCCTCCCCATGATCGCT CGCTCGCTCTCGCCCAACTACCTGGAATACTTCGAGGACATTCTGAAGGT GGTCACGTTCATGACCTACTTCACTGAGAGCATTCCCAACGAAGTGTTCC AGCTCATCCCCATCTATCTGCAGAACGTTGAGACTTGGGCCCAGGACTAC CTTCCACGTACGTTTGCTTGCGGCTCTCATCTTAGTCTTCAAGCGCTGAC AGACCACAGACATGCTGCCTTCGCTCGACAACCTGGTGAGCAAGAGCAAG GACTTTTTCCTTGCTGGCCCCTTCGCAGAGATGTACTACAAGATGGCACT GAGGGCATTCACAGCCAAGACGTCCGAGAGTGTGCAGCTGAGCGCCTGTG AGCTCCTCGAGTGCGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124178:3..519-

>mRNA_M-pyrifera_M_contig124178.4920.1 ID=mRNA_M-pyrifera_M_contig124178.4920.1|Name=mRNA_M-pyrifera_M_contig124178.4920.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig124178:3..519- (Macrocystis pyrifera P11B4 male)
GTAAGAGTCTCCGACCAGGACAATGGCAACGAGAGTAGTGCCCTGGTGGG
TCTGGAGTGCCTCAAGGCCATCCAGACGGTGCTGGTCTCGATCAGGAAGA
AGACAGAGGCACTTGTGCCGGTGATCCACGTGCTCCTCCCCATGATCGCT
CGCTCGCTCTCGCCCAACTACCTGGAATACTTCGAGGACATTCTGAAGGT
GGTCACGTTCATGACCTACTTCACTGAGAGCATTCCCAACGAAGTGTTCC
AGCTCATCCCCATCTATCTGCAGAACGTTGAGACTTGGGCCCAGGACTAC
CTTCCACGTAAGAGTCTCCGACCAGGACAATGGCAACGAGAGTAGTGCCC
TGGTGGGTCTGGAGTGCCTCAAGGCCATCCAGACGGTGCTGGTCTCGATC
AGGAAGAAGACAGAGGCACTTGTGCCGGTGATCCACGTGCTCCTCCCCAT
GATCGCTCGCTCGCTCTCGCCCAACTACCTGGAATACTTCGAGGACATTC
TGAAGGTGGTCACGTTCATGACCTACTTCACTGAGAGCATTCCCAACGAA
GTGTTCCAGCTCATCCCCATCTATCTGCAGAACGTTGAGACTTGGGCCCA
GGACTACCTTCCACACATGCTGCCTTCGCTCGACAACCTGGTGAGCAAGA
GCAAGGACTTTTTCCTTGCTGGCCCCTTCGCAGAGATGTACTACAAGATG
GCACTGAGGGCATTCACAGCCAAGACGTCCGAGAGTGTGCAGCTGAGCGC
CTGTGAGCTCCTCGAGTGCGTGACATGCTGCCTTCGCTCGACAACCTGGT
GAGCAAGAGCAAGGACTTTTTCCTTGCTGGCCCCTTCGCAGAGATGTACT
ACAAGATGGCACTGAGGGCATTCACAGCCAAGACGTCCGAGAGTGTGCAG
CTGAGCGCCTGTGAGCTCCTCGAGTGCGTG
back to top