mRNA_M-pyrifera_M_contig124167.4917.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124167.4917.1
Unique NamemRNA_M-pyrifera_M_contig124167.4917.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A0A8E8PJQ2_9STRA (Elongation factor 1-alpha n=1 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJQ2_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.910e-95
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            GIIKPGM +CFAPVGLTTECKSVEMHHTSMPQA PGDNVGFNVKN+SVKQIKRGFVASD+KNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV
Sbjct:  255 GIIKPGMTICFAPVGLTTECKSVEMHHTSMPQAVPGDNVGFNVKNVSVKQIKRGFVASDAKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 397          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: B7TA04_ARTSF (Translation elongation factor-1 alpha (Fragment) n=1 Tax=Artemia franciscana TaxID=6661 RepID=B7TA04_ARTSF)

HSP 1 Score: 217 bits (553), Expect = 1.280e-69
Identity = 96/143 (67.13%), Postives = 124/143 (86.71%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            GIIKPGM++ FAP  +TTE KSVEMHH S+ QA PGDNVGFNVKN+SVK+++RG+VASDSKN+PA+G+  F A VI++NHPG ++NGYTPVLDCHTAHIACKF E++++ D+R+GK TE   + +K+GD+AT+TLVPSKP+CV
Sbjct:   16 GIIKPGMIVTFAPANITTEVKSVEMHHESLEQASPGDNVGFNVKNVSVKELRRGYVASDSKNNPARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAATITLVPSKPLCV 158          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A0A8E8PJR7_9STRA (EF1 translation elongation factor 1a n=1 Tax=Placidida sp. TaxID=2810146 RepID=A0A8E8PJR7_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.550e-69
Identity = 102/143 (71.33%), Postives = 119/143 (83.22%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            GI+KPG+ + FAP  L+TE KSVEMHH  + QAQPGDNVGFNVKN+SVKQ+KRG+VA + KNDP K   SF+A VI+MNHPG +T GY PVLDCHTAHIACKFTE++D+QDKRSGKVTEG  E +KNGDS T T+VPSKPM V
Sbjct:  157 GILKPGITVVFAPSSLSTEVKSVEMHHQELAQAQPGDNVGFNVKNVSVKQLKRGYVAGNVKNDPPKKVESFEAQVIVMNHPGKITAGYCPVLDCHTAHIACKFTELKDKQDKRSGKVTEGACESVKNGDSCTATMVPSKPMSV 299          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A0A7S2SBF0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBF0_9STRA)

HSP 1 Score: 216 bits (551), Expect = 3.140e-69
Identity = 101/143 (70.63%), Postives = 118/143 (82.52%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            G+IKPGM++ FAP GL+TE KSVEMHH S+P+A PGDNVGFNVKNLSVK IKRG VASD+KNDPAKG  SF+A VIIMNHPG + NGY+PVLDCHTAHIACKF  +  + D+RSGKV E   + +KNGD+  VTL P+KPMCV
Sbjct:   30 GVIKPGMVVSFAPTGLSTEVKSVEMHHESLPEAVPGDNVGFNVKNLSVKDIKRGNVASDTKNDPAKGCTSFEAQVIIMNHPGQIGNGYSPVLDCHTAHIACKFASINQKMDRRSGKVMEENPKFVKNGDACMVTLEPTKPMCV 172          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A5Z0Q5_9HYME (Elongation factor 1 alpha (Fragment) n=1 Tax=Andrena crataegi TaxID=205191 RepID=A5Z0Q5_9HYME)

HSP 1 Score: 215 bits (547), Expect = 6.240e-69
Identity = 96/143 (67.13%), Postives = 122/143 (85.31%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            G++KPGML+ FAP GLTTE KSVEMHH ++ +A PGDNVGFNVKN+SVK+++RG+VA DSKN+P KGAA F A VI++NHPG ++NGYTPVLDCHTAHIACKF E++++ D+R+GK TE   + +K+GD+A V LVPSKPMCV
Sbjct:   37 GVLKPGMLVTFAPAGLTTEVKSVEMHHEALTEAVPGDNVGFNVKNVSVKELRRGYVAXDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLVPSKPMCV 179          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: K9LVP8_9HYME (Elongation factor 1 alpha (Fragment) n=1 Tax=Chyphotes calexicensis TaxID=1218350 RepID=K9LVP8_9HYME)

HSP 1 Score: 217 bits (552), Expect = 1.010e-68
Identity = 96/143 (67.13%), Postives = 124/143 (86.71%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            G++KPGM++ FAP GLTTE KSVEMHH ++ +A PGDNVGFNVKN+SVK+++RG+VA DSKN+P KGAA F A VI++NHPG ++NGYTPVLDCHTAHIACKF E++++ D+R+GKVTE   + +K+GD+A VTLVP+KPMCV
Sbjct:  112 GVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKVTEDNPKAIKSGDAAIVTLVPTKPMCV 254          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A0A0B5JAD4_POLGA (Elongation factor 1-alpha F2 (Fragment) n=1 Tax=Polistes gallicus TaxID=34730 RepID=A0A0B5JAD4_POLGA)

HSP 1 Score: 213 bits (543), Expect = 1.010e-68
Identity = 95/143 (66.43%), Postives = 121/143 (84.62%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            G++KPGM++ FAP GLTTE KSVEMHH ++P+A PGDNVGFNVKN+SVK+++RGFVA DSK +P KGAA   A VI++NHPG ++NGYTPVLDCHTAHIACKF E++++ D+R+GK TE   + +K+GD+A V LVPSKPMCV
Sbjct:   19 GVLKPGMVVTFAPAGLTTEVKSVEMHHEALPEAVPGDNVGFNVKNVSVKELRRGFVAGDSKXNPPKGAADXTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVNLVPSKPMCV 161          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: A0A7R8VZY8_9CRUS (Hypothetical protein n=2 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8VZY8_9CRUS)

HSP 1 Score: 215 bits (548), Expect = 3.970e-68
Identity = 97/143 (67.83%), Postives = 122/143 (85.31%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            GI+KPG ++ FAPV LTTE KSVEMHH ++ QA PGDNVGFN+KN+SVK+++RG+VASDSKN+PAKGAA F A VI++NHPG + NGYTPVLDCHTAHIACKF+E++++ D+R+GK  E   + +K+GDSA V LVPSKPMCV
Sbjct:   70 GILKPGTVVTFAPVNLTTEVKSVEMHHEALEQAVPGDNVGFNIKNVSVKELRRGYVASDSKNNPAKGAADFTAQVIVLNHPGQIVNGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTVEENPKSIKSGDSAIVVLVPSKPMCV 212          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: E4Y3G8_OIKDI (Uncharacterized protein (Fragment) n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y3G8_OIKDI)

HSP 1 Score: 214 bits (545), Expect = 5.170e-68
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            G+IKPGML  FAPV +TTE KSVEMHH S+P+A PGDNVGFNVKN+SVK I+RG VASDSKNDPAK A +F A VI+MNHPG + NGY+PVLDCHTAHIACKFTE++++ D+RSGK  E   +K+K+GD+A V + PSKPMCV
Sbjct:   46 GVIKPGMLATFAPVNVTTEVKSVEMHHESLPEAGPGDNVGFNVKNVSVKDIRRGNVASDSKNDPAKEAKTFTAQVIVMNHPGEIGNGYSPVLDCHTAHIACKFTELKEKIDRRSGKKMEDFPKKIKSGDAAIVLMTPSKPMCV 188          
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Match: K9LV74_9HYME (Elongation factor 1 alpha (Fragment) n=2 Tax=Parasitoida TaxID=1955251 RepID=K9LV74_9HYME)

HSP 1 Score: 211 bits (537), Expect = 6.180e-68
Identity = 93/143 (65.03%), Postives = 120/143 (83.92%), Query Frame = -1
Query:    1 GIIKPGMLLCFAPVGLTTECKSVEMHHTSMPQAQPGDNVGFNVKNLSVKQIKRGFVASDSKNDPAKGAASFDAHVIIMNHPGTVTNGYTPVLDCHTAHIACKFTEMRDRQDKRSGKVTEGPAEKMKNGDSATVTLVPSKPMCV 429
            GI+KPGML+ FAPV LTTE KSVEMHH ++P+A PGDNVGFNVKN+ VK ++RG+VA DSKN P +GA+ F+A VI++NHPG ++NGYTPVLDCHTAHIACKF E++++ D+R+GK TE   + +K+GD+A V L P+KPMCV
Sbjct:    5 GILKPGMLVTFAPVALTTEVKSVEMHHEALPEAMPGDNVGFNVKNIPVKDLRRGYVAGDSKNQPPRGASDFNAQVIVLNHPGEISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSVKSGDAAIVMLQPTKPMCV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124167.4917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E8PJQ2_9STRA2.910e-9596.50Elongation factor 1-alpha n=1 Tax=Placidida sp. Ta... [more]
B7TA04_ARTSF1.280e-6967.13Translation elongation factor-1 alpha (Fragment) n... [more]
A0A8E8PJR7_9STRA2.550e-6971.33EF1 translation elongation factor 1a n=1 Tax=Placi... [more]
A0A7S2SBF0_9STRA3.140e-6970.63Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A5Z0Q5_9HYME6.240e-6967.13Elongation factor 1 alpha (Fragment) n=1 Tax=Andre... [more]
K9LVP8_9HYME1.010e-6867.13Elongation factor 1 alpha (Fragment) n=1 Tax=Chyph... [more]
A0A0B5JAD4_POLGA1.010e-6866.43Elongation factor 1-alpha F2 (Fragment) n=1 Tax=Po... [more]
A0A7R8VZY8_9CRUS3.970e-6867.83Hypothetical protein n=2 Tax=Cyprideis torosa TaxI... [more]
E4Y3G8_OIKDI5.170e-6869.93Uncharacterized protein (Fragment) n=1 Tax=Oikople... [more]
K9LV74_9HYME6.180e-6865.03Elongation factor 1 alpha (Fragment) n=2 Tax=Paras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124167contigM-pyrifera_M_contig124167:4..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.6
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog12957.ACEP16440-PA
Hectar predicted targeting categoryother localisation
EggNOG OGs2BYI9@1,2S2HH@2759,39J0U@33154,3CNTJ@33208,3E4ZW@33213
Ec32 ortholog descriptionEEF1A1, eukaryotic translation elongation factor 1 alpha
Ec32 orthologEc-21_002990.2
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size433
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.9546406-CDS-M-pyrifera_M_contig124167:3..4321622815758.9546406-CDS-M-pyrifera_M_contig124167:3..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124167 4..432 +
1692277555.8965268-CDS-M-pyrifera_M_contig124167:3..4321692277555.8965268-CDS-M-pyrifera_M_contig124167:3..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124167 4..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124167.4917.1prot_M-pyrifera_M_contig124167.4917.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124167 4..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124167.4917.1

>prot_M-pyrifera_M_contig124167.4917.1 ID=prot_M-pyrifera_M_contig124167.4917.1|Name=mRNA_M-pyrifera_M_contig124167.4917.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
DAHRLGRHQSDGGGVTVLHLLSRALSDLAGTLVLAVAHLRELARNVRSVA
IQHRGVAVGDGTRVVHDDDVSVERGSALGGVVLGVRRDEATLDLLDRQVL
DVEANVVTRLRLRHGGVVHLHRLALRGQAHRREAQEHARLDDA
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mRNA from alignment at M-pyrifera_M_contig124167:4..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124167.4917.1 ID=mRNA_M-pyrifera_M_contig124167.4917.1|Name=mRNA_M-pyrifera_M_contig124167.4917.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=431bp|location=Sequence derived from alignment at M-pyrifera_M_contig124167:4..434+ (Macrocystis pyrifera P11B4 male)
GACGCACATCGGCTTGGACGGCACCAGAGTGACGGTGGCGGAGTCACCGT TCTTCATCTTCTCAGCCGGGCCCTCAGTGACCTTGCCGGAACGCTTGTCC TGGCGGTCGCGCATCTCCGTGAACTTGCACGCAATGTGCGCAGTGTGGCA ATCCAGCACCGGGGTGTAGCCGTTGGTGACGGTACCCGGGTGGTTCATGA TGATGACGTGAGCGTCGAACGAGGCAGCGCCCTTGGCGGGGTCGTTCTTG GAGTCAGACGCGACGAAGCCACGCTTGATCTGCTTGACAGACAGGTTCTT GACGTTGAAGCCAACGTTGTCACCCGGCTGCGCCTGCGGCATGGAGGTGT GGTGCATCTCCACAGACTTGCACTCCGTGGTCAGGCCCACCGGCGCGAAG CACAGGAGCATGCCCGGCTTGATGATGCCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124167:4..434+

>mRNA_M-pyrifera_M_contig124167.4917.1 ID=mRNA_M-pyrifera_M_contig124167.4917.1|Name=mRNA_M-pyrifera_M_contig124167.4917.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig124167:4..434+ (Macrocystis pyrifera P11B4 male)
GACGCACATCGGCTTGGACGGCACCAGAGTGACGGTGGCGGAGTCACCGT
TCTTCATCTTCTCAGCCGGGCCCTCAGTGACCTTGCCGGAACGCTTGTCC
TGGCGGTCGCGCATCTCCGTGAACTTGCACGCAATGTGCGCAGTGTGGCA
ATCCAGCACCGGGGTGTAGCCGTTGGTGACGGTACCCGGGTGGTTCATGA
TGATGACGTGAGCGTCGAACGAGGCAGCGCCCTTGGCGGGGTCGTTCTTG
GAGTCAGACGCGACGAAGCCACGCTTGATCTGCTTGACAGACAGGTTCTT
GACGTTGAAGCCAACGTTGTCACCCGGCTGCGCCTGCGGCATGGAGGTGT
GGTGCATCTCCACAGACTTGCACTCCGTGGTCAGGCCCACCGGCGCGAAG
CACAGGAGCATGCCCGGCTTGATGATGCCGACGCACATCGGCTTGGACGG
CACCAGAGTGACGGTGGCGGAGTCACCGTTCTTCATCTTCTCAGCCGGGC
CCTCAGTGACCTTGCCGGAACGCTTGTCCTGGCGGTCGCGCATCTCCGTG
AACTTGCACGCAATGTGCGCAGTGTGGCAATCCAGCACCGGGGTGTAGCC
GTTGGTGACGGTACCCGGGTGGTTCATGATGATGACGTGAGCGTCGAACG
AGGCAGCGCCCTTGGCGGGGTCGTTCTTGGAGTCAGACGCGACGAAGCCA
CGCTTGATCTGCTTGACAGACAGGTTCTTGACGTTGAAGCCAACGTTGTC
ACCCGGCTGCGCCTGCGGCATGGAGGTGTGGTGCATCTCCACAGACTTGC
ACTCCGTGGTCAGGCCCACCGGCGCGAAGCACAGGAGCATGCCCGGCTTG
ATGATGCC
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