mRNA_M-pyrifera_M_contig124166.4916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124166.4916.1
Unique NamemRNA_M-pyrifera_M_contig124166.4916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124166.4916.1 vs. uniprot
Match: A0A7S4M4Z4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M4Z4_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 3.510e-38
Identity = 76/165 (46.06%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:    1 MNLKAAWGAFQDVEKLLGAGDVDQELVHLAHFDLGMFLWFLSLLPEFLGPAAKLLALVGFKGDSERGIAYLEEVAASSSLRAPFATVILVVRSLYLPMRAFPYVRSEDPNVVKGKELLATMEQRWPTGFAGLLVRGIGLRKLGELDEAKAVFENLTQLLQGQGID 495
            MNL  +WG  Q+ EKL   G+VD EL+ L HFDLG+FL+FLS LPE LG AA+LL+L+GFKGD  +G AYL+EVA S S+R+PFA  IL  + LY+    FP +  E  N+   ++ L    ++ P G   L ++GI LR+ G+  EA  +FE++    Q + +D
Sbjct:  124 MNLSKSWGYIQEAEKLTQKGEVDAELILLLHFDLGLFLFFLSFLPEVLGFAARLLSLLGFKGDRIQGFAYLDEVAHSESIRSPFAYSILSAKYLYMSENVFP-INPETTNLANAQKALDEALEKCPDGLGFLTLKGICLRRFGKHQEANTIFEDICARYQAKNVD 287
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BLAST of mRNA_M-pyrifera_M_contig124166.4916.1 vs. uniprot
Match: A0A0L0D1Z0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D1Z0_THETB)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10
Identity = 51/160 (31.87%), Postives = 85/160 (53.12%), Query Frame = 1 
Query:    1 MNLKAAWGAFQDVEKLLGAGD--VDQELVHLAHFDLGMFLWFLSLLPEFLGPAAKLLALVGFKGDSERGIAYLEEVAASSSLRAPFATVILVVRSLYLPMRAFPYVRSEDPNVVKGKELLATMEQRWPTGFAGLLVRGIGLRKLGEL-DEAKAVFENLTQ 471
            + L+ +W AF  ++  + A    + Q + +  +F +G+F + +SL+P   G  AK+L ++GF+GD   G+  +  V+ S   R+ FA +IL+   LYLP R F     +D  +    ++L  ++ R+P     LL RG  LRK G   D + AV E + Q
Sbjct:   81 LALRKSWKAFTAIQTDIRASSLPISQFVANGVNFGVGLFFFVVSLVPP--GLVAKVLKMLGFRGDRALGLGLVRGVSDSGMGRSGFAAMILLFSMLYLP-RGFD---RDDGTLDDASDVLDGIQARYPNAALFLLFRGQLLRKTGRAADASDAVEEAIAQ 234
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BLAST of mRNA_M-pyrifera_M_contig124166.4916.1 vs. uniprot
Match: A0A0L0DDB4_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDB4_THETB)

HSP 1 Score: 66.2 bits (160), Expect = 1.280e-9
Identity = 47/171 (27.49%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:    4 NLKAAWGAFQDVEKLLGAGD------VDQELVHLAHFDLGMFLWFLSLLPEFLGPAAKLLALVGFKGDSERGIAYLEEVAASSSLRAPFATVILVVRSLYLPMRAFPYVRSEDPNVVKGKELLATMEQRWPTGFAGLLVRGIGLRKLGELDEAKAVFENLTQLLQGQGIDP 498
            +L+  W AF  V + + A D      +D  L+    +  G+  + L+L+   +G    LL  +G  GD+ RGI +L EVAA   L +PFA V+++  ++Y+P    P+      ++ +   L+A  ++R+P G    L+     R  G+   A A   +  +L+   G  P
Sbjct:  322 HLRKGWKAFAAVLEQIKAYDAVHAVRLDPALMAAVKYGQGLTYFLLALVRPGMGKT--LLGALGLHGDASRGIEFLSEVAAGEFLDSPFAAVVVLAATVYMPTSFVPH----PEHLERAAHLIALNKERYPAGTVFSLLEAPLRRLQGDGPAALAAINHAVELVTASGAAP 486
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BLAST of mRNA_M-pyrifera_M_contig124166.4916.1 vs. uniprot
Match: A0A2N6N9I9_BEABA (Inclusion body clearance protein IML2 n=5 Tax=Beauveria TaxID=5581 RepID=A0A2N6N9I9_BEABA)

HSP 1 Score: 52.4 bits (124), Expect = 7.800e-5
Identity = 48/153 (31.37%), Postives = 71/153 (46.41%), Query Frame = 1 
Query:   61 DVDQELVH----LAHFDLGMFLWFLSLLPEFLGPA-AKLLALVGFKGDSERGIAYLEEVAASSSLRAPFATVILVVRSLYLPMRAFPYVR--------SEDPNVV---KGKELLATMEQRWPTGFAGLLVRGIGLRKLGELDEAKAVFENLTQ 471
            D+D EL +      H  + M +  L L+   + PA A++L++VGFKGD E GI  L    A  +    FA ++L+  + Y  M     ++        S +P  +   K  ELLATM +R+P     L+    GL    +L  A A  E  TQ
Sbjct:  233 DIDIELANPIDAFIHSGVNMCMGILMLMMSLMPPAFARILSIVGFKGDREAGIRMLWRSVAHPNANGAFAGIMLL--NFYHSMLGLVDIQPHEADFDESAEPYGIPQHKVGELLATMRERFPQSRMWLIEEAKGLASRQDLPSAIAELEGGTQ 383
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124166.4916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4M4Z4_9EUKA3.510e-3846.06Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A0L0D1Z0_THETB1.370e-1031.88Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A0L0DDB4_THETB1.280e-927.49Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A2N6N9I9_BEABA7.800e-531.37Inclusion body clearance protein IML2 n=5 Tax=Beau... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124166contigM-pyrifera_M_contig124166:21..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue2.5e-09
Seed eggNOG ortholog529818.AMSG_02821T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to misfolded protein
EggNOG OGsKOG3783@1,KOG3783@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size498
Cds size498
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.915034-CDS-M-pyrifera_M_contig124166:20..5181622815758.915034-CDS-M-pyrifera_M_contig124166:20..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124166 21..518 -
1692277555.8801818-CDS-M-pyrifera_M_contig124166:20..5181692277555.8801818-CDS-M-pyrifera_M_contig124166:20..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124166 21..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124166.4916.1prot_M-pyrifera_M_contig124166.4916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124166 21..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124166.4916.1

>prot_M-pyrifera_M_contig124166.4916.1 ID=prot_M-pyrifera_M_contig124166.4916.1|Name=mRNA_M-pyrifera_M_contig124166.4916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
MNLKAAWGAFQDVEKLLGAGDVDQELVHLAHFDLGMFLWFLSLLPEFLGP
AAKLLALVGFKGDSERGIAYLEEVAASSSLRAPFATVILVVRSLYLPMRA
FPYVRSEDPNVVKGKELLATMEQRWPTGFAGLLVRGIGLRKLGELDEAKA
VFENLTQLLQGQGIDP
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mRNA from alignment at M-pyrifera_M_contig124166:21..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124166.4916.1 ID=mRNA_M-pyrifera_M_contig124166.4916.1|Name=mRNA_M-pyrifera_M_contig124166.4916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig124166:21..518- (Macrocystis pyrifera P11B4 male)
ATGAACCTCAAGGCCGCCTGGGGCGCATTCCAGGACGTGGAGAAGCTGCT
GGGCGCCGGCGATGTGGACCAGGAGCTGGTGCACCTGGCCCACTTCGACC
TGGGCATGTTCCTGTGGTTCCTCTCGCTGCTGCCCGAGTTCCTCGGCCCC
GCCGCCAAGCTCCTGGCCCTCGTCGGCTTCAAGGGCGACAGCGAGCGTGG
CATTGCCTACCTCGAAGAGGTGGCCGCCTCCAGCTCCCTGCGCGCGCCCT
TCGCCACCGTCATCCTCGTGGTGCGGTCGCTCTACCTGCCCATGCGTGCA
TTCCCCTACGTGCGCAGCGAGGACCCCAACGTGGTCAAGGGCAAGGAGCT
GCTCGCCACCATGGAGCAGCGCTGGCCCACTGGCTTCGCTGGCCTGTTGG
TGCGCGGCATTGGCCTGCGCAAGCTGGGCGAGCTCGACGAGGCCAAGGCG
GTGTTCGAGAACTTGACGCAATTGCTTCAAGGCCAGGGCATTGACCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124166:21..518-

>mRNA_M-pyrifera_M_contig124166.4916.1 ID=mRNA_M-pyrifera_M_contig124166.4916.1|Name=mRNA_M-pyrifera_M_contig124166.4916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig124166:21..518- (Macrocystis pyrifera P11B4 male)
ATGAACCTCAAGGCCGCCTGGGGCGCATTCCAGGACGTGGAGAAGCTGCT
GGGCGCCGGCGATGTGGACCAGGAGCTGGTGCACCTGGCCCACTTCGACC
TGGGCATGTTCCTGTGGTTCCTCTCGCTGCTGCCCGAGTTCCTCGGCCCC
GCCGCCAAGCTCCTGGCCCTCGTCGGCTTCAAGGGCGACAGCGAGCGTGG
CATTGCCTACCTCGAAGAGGTGGCCGCCTCCAGCTCCCTGCGCGCGCCCT
TCGCCACCGTCATCCTCGTGGTGCGGTCGCTCTACCTGCCCATGCGTGCA
TTCCCCTACGTGCGCAGCGAGGACCCCAACGTGGTCAAGGGCAAGGAGCT
GCTCGCCACCATGGAGCAGCGCTGGCCCACTGGCTTCGCTGGCCTGTTGG
TGCGCGGCATTGGCCTGCGCAAGCTGGGCGAGCTCGACGAGGCCAAGGCG
GTGTTCGAGAACTTGACGCAATTGCTTCAAGGCCAGGGCATTGACCCTAT
GAACCTCAAGGCCGCCTGGGGCGCATTCCAGGACGTGGAGAAGCTGCTGG
GCGCCGGCGATGTGGACCAGGAGCTGGTGCACCTGGCCCACTTCGACCTG
GGCATGTTCCTGTGGTTCCTCTCGCTGCTGCCCGAGTTCCTCGGCCCCGC
CGCCAAGCTCCTGGCCCTCGTCGGCTTCAAGGGCGACAGCGAGCGTGGCA
TTGCCTACCTCGAAGAGGTGGCCGCCTCCAGCTCCCTGCGCGCGCCCTTC
GCCACCGTCATCCTCGTGGTGCGGTCGCTCTACCTGCCCATGCGTGCATT
CCCCTACGTGCGCAGCGAGGACCCCAACGTGGTCAAGGGCAAGGAGCTGC
TCGCCACCATGGAGCAGCGCTGGCCCACTGGCTTCGCTGGCCTGTTGGTG
CGCGGCATTGGCCTGCGCAAGCTGGGCGAGCTCGACGAGGCCAAGGCGGT
GTTCGAGAACTTGACGCAATTGCTTCAAGGCCAGGGCATTGACCCT
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