mRNA_M-pyrifera_M_contig12412.4914.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI) HSP 1 Score: 149 bits (376), Expect = 3.110e-43 Identity = 78/105 (74.29%), Postives = 82/105 (78.10%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
VKNSPSCLGYD S F+ATFEAF+E RNPNLLAVRPTGFGGA NAKSDTMQMSYVIA TRPLGPVLL GL F LAIP VE+ TGI REQ LS+II
Sbjct: 100 VKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAII 204
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.370e-25 Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query: 16 PSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSI 315
P L +D F+ TF+ F+E F + KGMV RNPNLLA +P G+GGA AK DT +SYV+A TRP+G L F LA P +E TG+PR+QFLS I
Sbjct: 105 PGSLSFDPQYFKPTFDIFAETFGADKAKGMVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATRPIGKPALALGAFALATPFIEGVTGVPRDQFLSII 204
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC) HSP 1 Score: 94.4 bits (233), Expect = 6.730e-22 Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
VK+ L + + F + EAFSEVF E++K MV +NP LLA+ P+G GGA + TMQ SY++ +TRP GP LL GL FLL P +E TGIP + ++S +
Sbjct: 82 VKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIPIKTTITSAL 186
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.800e-19 Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIP 291
KN P+ L ++ S F + FSE F +D K MV RNP LLA+ P A A TMQ SY++A TRP GPVLL G+ LL +P +E TGIP
Sbjct: 125 TKNLPAVLAFNKSYFAESLANFSETFGEDDAKAMVQRNPGLLAIPPAN---AAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGIP 217
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS) HSP 1 Score: 80.5 bits (197), Expect = 3.040e-16 Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLG---PVLLGGLFFLLAIPCVEIATGIPREQFLSSI 315
VK P L ++ F + +AF E F E+ K MV RNP LL+V+P A +A TMQMSYV+ FTRP+G PVL+ GL LA+P +E A G+ + + LSS+
Sbjct: 120 VKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGL---LAVPALESALGVGKGELLSSL 220
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC) HSP 1 Score: 76.3 bits (186), Expect = 5.390e-15 Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
VK P L ++ + + FS+ F E++K MV RNP LL V P A S TMQ+SY+++FTRPLG L G+ LL IP +E G+ R + + S++
Sbjct: 74 VKILPQALAFNKDYMAPSLDGFSDAFGLEESKEMVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTRPLGNAGLAGIGSLLLIPVIEGTLGLQRGELIGSLL 175
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 3.110e-14 Identity = 43/101 (42.57%), Postives = 48/101 (47.52%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFL 306
VK P CL +D S F+ GGA AK DT MSYVIAFTRPLGPVLL GL L++P VE TGIPR + L
Sbjct: 76 VKAVPGCLAFDPSNFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.520e-11 Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSIIP 321
V P L ++ S F TF + F + V RNP L++V PTG+GGA A +T+ +SYV+ TR G V L L FLL P +E TG+ F +I+P
Sbjct: 90 VTKCPKVLEFNGSNFAPTFANYCTNFGDDVALATVLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGV---HFREAILP 192
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 2.030e-9 Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMV 108
VKNSPSCLGYD S FRATFEAFSEVF E+TKG V
Sbjct: 100 VKNSPSCLGYDGSVFRATFEAFSEVFGEEETKGCV 134
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2GAC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAC3_9STRA) HSP 1 Score: 50.4 bits (119), Expect = 4.190e-5 Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query: 4 VKNSPSCLGYDSSTFRATFEAFSEV--------FTPEDTKGMVTRNPNLLAVRPTGFGGA 159
V+ P LGYDS+ F T AF ++ +D M+ RNPNL+AVRP+G+GGA
Sbjct: 129 VEAEPKVLGYDSTRFSETKAAFVTAMCEGEEAKYSEDDVVAMIMRNPNLIAVRPSGYGGA 188 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12412.4914.1 >prot_M-pyrifera_M_contig12412.4914.1 ID=prot_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp MVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLback to top mRNA from alignment at M-pyrifera_M_contig12412:2681..3936+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12412.4914.1 ID=mRNA_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1256bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:2681..3936+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12412:2681..3936+ >mRNA_M-pyrifera_M_contig12412.4914.1 ID=mRNA_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:2681..3936+ (Macrocystis pyrifera P11B4 male)back to top |