mRNA_M-pyrifera_M_contig12412.4914.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12412.4914.1
Unique NamemRNA_M-pyrifera_M_contig12412.4914.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: D7FYY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY7_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 3.110e-43
Identity = 78/105 (74.29%), Postives = 82/105 (78.10%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
            VKNSPSCLGYD S F+ATFEAF+E            RNPNLLAVRPTGFGGA NAKSDTMQMSYVIA TRPLGPVLL GL F LAIP VE+ TGI REQ LS+II
Sbjct:  100 VKNSPSCLGYDGSVFQATFEAFTEXXXXXXXXXXXXRNPNLLAVRPTGFGGAANAKSDTMQMSYVIAATRPLGPVLLFGLAFCLAIPLVEMGTGISREQILSAII 204          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S1UHZ5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHZ5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.370e-25
Identity = 52/100 (52.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:   16 PSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSI 315
            P  L +D   F+ TF+ F+E F  +  KGMV RNPNLLA +P G+GGA  AK DT  +SYV+A TRP+G   L    F LA P +E  TG+PR+QFLS I
Sbjct:  105 PGSLSFDPQYFKPTFDIFAETFGADKAKGMVVRNPNLLATKPDGWGGAGGAKEDTFYLSYVVAATRPIGKPALALGAFALATPFIEGVTGVPRDQFLSII 204          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: B7FNV7_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNV7_PHATC)

HSP 1 Score: 94.4 bits (233), Expect = 6.730e-22
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
            VK+    L +  + F  + EAFSEVF  E++K MV +NP LLA+ P+G GGA +    TMQ SY++ +TRP GP LL GL FLL  P +E  TGIP +  ++S +
Sbjct:   82 VKDLTIVLAFKRNYFAPSLEAFSEVFGEEESKAMVQQNPGLLALPPSGAGGADSVTDQTMQFSYLVGYTRPFGPFLLYGLLFLLFDPFLEYLTGIPIKTTITSAL 186          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2MUE2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MUE2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-19
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIP 291
             KN P+ L ++ S F  +   FSE F  +D K MV RNP LLA+ P     A  A   TMQ SY++A TRP GPVLL G+  LL +P +E  TGIP
Sbjct:  125 TKNLPAVLAFNKSYFAESLANFSETFGEDDAKAMVQRNPGLLAIPPAN---AAKADGQTMQFSYIVAATRPAGPVLLPGVLTLLCVPAIEAVTGIP 217          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: B5YMT8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMT8_THAPS)

HSP 1 Score: 80.5 bits (197), Expect = 3.040e-16
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLG---PVLLGGLFFLLAIPCVEIATGIPREQFLSSI 315
            VK  P  L ++   F  + +AF E F  E+ K MV RNP LL+V+P     A +A   TMQMSYV+ FTRP+G   PVL+ GL   LA+P +E A G+ + + LSS+
Sbjct:  120 VKIQPGVLAFNKDNFAPSLDAFGETFGLEEAKDMVIRNPGLLSVKPVI---AASADDLTMQMSYVVDFTRPIGAAGPVLILGL---LAVPALESALGVGKGELLSSL 220          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: K0RXR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RXR5_THAOC)

HSP 1 Score: 76.3 bits (186), Expect = 5.390e-15
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSII 318
            VK  P  L ++      + + FS+ F  E++K MV RNP LL V P     A    S TMQ+SY+++FTRPLG   L G+  LL IP +E   G+ R + + S++
Sbjct:   74 VKILPQALAFNKDYMAPSLDGFSDAFGLEESKEMVMRNPGLLGVEPKD---AVTVTSSTMQLSYIVSFTRPLGNAGLAGIGSLLLIPVIEGTLGLQRGELIGSLL 175          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7R9UE42_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UE42_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.110e-14
Identity = 43/101 (42.57%), Postives = 48/101 (47.52%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFL 306
            VK  P CL +D S F+                                 GGA  AK DT  MSYVIAFTRPLGPVLL GL   L++P VE  TGIPR + L
Sbjct:   76 VKAVPGCLAFDPSNFQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGATGAKDDTFYMSYVIAFTRPLGPVLLAGLIAALSVPLVEGLTGIPRAELL 176          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2K6C2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6C2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.520e-11
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFLLAIPCVEIATGIPREQFLSSIIP 321
            V   P  L ++ S F  TF  +   F  +     V RNP L++V PTG+GGA  A  +T+ +SYV+  TR  G V L  L FLL  P +E  TG+    F  +I+P
Sbjct:   90 VTKCPKVLEFNGSNFAPTFANYCTNFGDDVALATVLRNPALMSVAPTGYGGADGAGQETVVLSYVVDATRDGGQVWLSLLAFLLLTPLLEQVTGV---HFREAILP 192          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A6H5KAE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAE4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.030e-9
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEVFTPEDTKGMV 108
            VKNSPSCLGYD S FRATFEAFSEVF  E+TKG V
Sbjct:  100 VKNSPSCLGYDGSVFRATFEAFSEVFGEEETKGCV 134          
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Match: A0A7S2GAC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GAC3_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.190e-5
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1
Query:    4 VKNSPSCLGYDSSTFRATFEAFSEV--------FTPEDTKGMVTRNPNLLAVRPTGFGGA 159
            V+  P  LGYDS+ F  T  AF           ++ +D   M+ RNPNL+AVRP+G+GGA
Sbjct:  129 VEAEPKVLGYDSTRFSETKAAFVTAMCEGEEAKYSEDDVVAMIMRNPNLIAVRPSGYGGA 188          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12412.4914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYY7_ECTSI3.110e-4374.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UHZ5_9STRA1.370e-2552.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B7FNV7_PHATC6.730e-2246.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2MUE2_9STRA1.800e-1947.92Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
B5YMT8_THAPS3.040e-1644.86Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
K0RXR5_THAOC5.390e-1539.05Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9UE42_9STRA3.110e-1442.57Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2K6C2_9STRA1.520e-1138.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5KAE4_9PHAE2.030e-982.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2GAC3_9STRA4.190e-543.33Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12412contigM-pyrifera_M_contig12412:2681..3936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue8.7e-23
Seed eggNOG ortholog2880.D7FYY7
Hectar predicted targeting categoryother localisation
EggNOG OGs2C1F6@1,2S9PY@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_002980.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size345
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12412.4914.1prot_M-pyrifera_M_contig12412.4914.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12412 2783..3915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.8369117-UTR-M-pyrifera_M_contig12412:2680..27821622815758.8369117-UTR-M-pyrifera_M_contig12412:2680..2782Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12412 2681..2782 +
1692277555.838753-UTR-M-pyrifera_M_contig12412:2680..27821692277555.838753-UTR-M-pyrifera_M_contig12412:2680..2782Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12412 2681..2782 +
1622815758.8790958-UTR-M-pyrifera_M_contig12412:3915..39361622815758.8790958-UTR-M-pyrifera_M_contig12412:3915..3936Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12412 3916..3936 +
1692277555.8698587-UTR-M-pyrifera_M_contig12412:3915..39361692277555.8698587-UTR-M-pyrifera_M_contig12412:3915..3936Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12412 3916..3936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.8558064-CDS-M-pyrifera_M_contig12412:2782..28921622815758.8558064-CDS-M-pyrifera_M_contig12412:2782..2892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 2783..2892 +
1692277555.8496144-CDS-M-pyrifera_M_contig12412:2782..28921692277555.8496144-CDS-M-pyrifera_M_contig12412:2782..2892Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 2783..2892 +
1622815758.8679378-CDS-M-pyrifera_M_contig12412:3803..39151622815758.8679378-CDS-M-pyrifera_M_contig12412:3803..3915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 3804..3915 +
1692277555.859707-CDS-M-pyrifera_M_contig12412:3803..39151692277555.859707-CDS-M-pyrifera_M_contig12412:3803..3915Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12412 3804..3915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12412.4914.1

>prot_M-pyrifera_M_contig12412.4914.1 ID=prot_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MVTRNPNLLAVRPTGFGGACNAKSDTMQMSYVIAFTRPLGPVLLGGLFFL
LAIPCVEIATGIPREQFLSSIIP*
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mRNA from alignment at M-pyrifera_M_contig12412:2681..3936+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12412.4914.1 ID=mRNA_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1256bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:2681..3936+ (Macrocystis pyrifera P11B4 male)
CAGGTGAAAAACTCGCCGAGCTGCCTCGGGTACGACTCGTCCACATTCAG GGCGACGTTCGAGGCGTTTTCGGAGGTGTTCACTCCCGAGGACACCAAGG GGATGGTCACACGCAACCCTAACCTCCTTGCCGTTCGGCCGACCGGCTTC GGCGGCGCCTGCAACGCCAAGTCGGACACCATGCAGATGAGCTACGTCAT TGCGTTCACGAGGTGAGAGGGTGGGGGGTGGGGGTCGCTTCAAAACTATG ATACGGTAGCACGAGTGCTTATGTACGTATGCTGGTTTCCTTTCGCTGGT CGCTACGTATGATTTTTCGTTTTTTGGGCCGTACGGACTTCAATATTTTC AACGGCCAGTGGGCCTTTCGTTTTTTCTCAGCTGCGCAAAACGTCATCGG GCTTTAGCTTGCGTGAACCCCGACGTCGGAATGCCTACCAAGGGGGAACC TTGCACGAGTATTCGAACACAAAGGTTTGAGCGTTACGGTTGTCTGAATA AAAGGTGTCGATTTTCGCTGTCCTGCTGTGCTCGAGCGTTCTGCAGCAGT GTATATTATCGTTTTTTTCTTTGTTTTGTTTTGTATTGTGTGGGGTTTCG TCGTGTTGCTCACGTTTTCAGCACTCCGATACGTAGTCAGTCCGCTGTGC CTGTTTTTGCATGCGTGCCTGGCTTGCATTTTTTGCGTATGTACATACAT ACGGGTGTCAGTTGAAATGGCAAGCAGCACAGTGATGGCTTGCTCCGCGG ATGTAAAAACGGTTGTCTTCTGTCCGGCTCCCCCCCCTCCTTACCCCCCT GAGAAGTGCAAGCAAAGTTGTGGAACGTGCTGGTTGAAATTAGTATGGGA CACTTTTTTTAGTAGTGCAAGGGCTAGCCCCTTTAGAATTGCACCCCGCA TTTTTTGGCGGGAAACTACTTGGAATTAGTGTTTTGACAATGTTTACAGT GTTATTGAGAAAGTGTTGGCTGACTTTCCACCCCTCCCCCCCCCCCGCCC CCGCCCCCGCCCATCTTCCCCTCTTTCACCCCGCTTCGTGTTGGCTGCCT TGCCGTACTGCCTTCATTTTTTGTCTTTCGTCGCCGTGGTCGCCACCGTC GCCTGCCCGCCCCCCCCGTCCAGGCCCCTGGGCCCCGTGCTCCTGGGGGG GCTGTTCTTTCTCCTGGCCATCCCGTGTGTGGAGATTGCCACCGGAATCC CTCGAGAGCAGTTCCTCTCCTCGATCATCCCGTAGACGATGGACGAGCGC CTGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12412:2681..3936+

>mRNA_M-pyrifera_M_contig12412.4914.1 ID=mRNA_M-pyrifera_M_contig12412.4914.1|Name=mRNA_M-pyrifera_M_contig12412.4914.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig12412:2681..3936+ (Macrocystis pyrifera P11B4 male)
ATGGTCACACGCAACCCTAACCTCCTTGCCGTTCGGCCGACCGGCTTCGG
CGGCGCCTGCAACGCCAAGTCGGACACCATGCAGATGAGCTACGTCATTG
CGTTCACGAGATGGTCACACGCAACCCTAACCTCCTTGCCGTTCGGCCGA
CCGGCTTCGGCGGCGCCTGCAACGCCAAGTCGGACACCATGCAGATGAGC
TACGTCATTGCGTTCACGAGGCCCCTGGGCCCCGTGCTCCTGGGGGGGCT
GTTCTTTCTCCTGGCCATCCCGTGTGTGGAGATTGCCACCGGAATCCCTC
GAGAGCAGTTCCTCTCCTCGATCATCCCGTAGGCCCCTGGGCCCCGTGCT
CCTGGGGGGGCTGTTCTTTCTCCTGGCCATCCCGTGTGTGGAGATTGCCA
CCGGAATCCCTCGAGAGCAGTTCCTCTCCTCGATCATCCCGTAG
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