mRNA_M-pyrifera_M_contig12405.4909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12405.4909.1
Unique NamemRNA_M-pyrifera_M_contig12405.4909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: D7FYM7_ECTSI (Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM7_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 5.670e-130
Identity = 192/202 (95.05%), Postives = 196/202 (97.03%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAIAGADYVVVAADTRMSTGYSIMSRDQ+KLHQLTSKCVIASAGCKTDVTTLWKELDV MTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVP+SASGSGQTYIIPLLDNLVEFKTR+DEKP RSAAETVELVKEL VTAGERDIYTGDAVEI +ISKD TSTQMFPLKKD
Sbjct:   50 TTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251
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BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A835ZC48_9STRA (Proteasome subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC48_9STRA)

HSP 1 Score: 318 bits (814), Expect = 7.060e-105
Identity = 155/202 (76.73%), Postives = 178/202 (88.12%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LA+AG DYVV+ ADTRMSTGY IMSRDQ+KLHQLTSKCVIASAGC++DVTTLWK LD RM MY HN+ K+M+TPA AQMLANTLYYRRFFPYYSFNVL GLD +GKG+VFSYDAIGS+ERV +SASGSGQ+YIIP++DNLV FKTR D KP R+A ETV+LVK++F+TAGERDIYTGDAVEI +I+   T TQ+F LKKD
Sbjct:   54 TTLAVAGEDYVVIGADTRMSTGYQIMSRDQTKLHQLTSKCVIASAGCRSDVTTLWKMLDHRMVMYKHNIGKDMSTPAAAQMLANTLYYRRFFPYYSFNVLAGLDAEGKGAVFSYDAIGSYERVEYSASGSGQSYIIPVMDNLVGFKTRLDPKPVRTAEETVDLVKDVFITAGERDIYTGDAVEICIITATGTQTQIFNLKKD 255
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BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7S2XWL8_9STRA (Proteasome subunit beta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWL8_9STRA)

HSP 1 Score: 286 bits (732), Expect = 1.820e-92
Identity = 139/202 (68.81%), Postives = 170/202 (84.16%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAIAG+++VVVAADTRMS GY+I+SR++SKLH+LT KC++A+AGC+TDVTTL   LD+RM MY HN+  EM T AVAQMLANTLYYRRFFPYYSFNVLCG+D++GKG V+SYDAIGSFE VP+SASGSGQ+YIIPL+D+ V FK R   KP  +  ETV++VK  FVTAGERDIYTGD VEI V++ +   +++FPLKKD
Sbjct:   54 TTLAIAGSNFVVVAADTRMSQGYNILSRNESKLHKLTEKCILAAAGCQTDVTTLRNVLDIRMQMYQHNVGHEMPTTAVAQMLANTLYYRRFFPYYSFNVLCGIDKEGKGVVYSYDAIGSFESVPYSASGSGQSYIIPLMDSTVAFKNRTQPKPNYTIEETVDIVKSAFVTAGERDIYTGDEVEIKVLTAEGCRSEIFPLKKD 255
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7S2DDA1_9STRA (Proteasome subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DDA1_9STRA)

HSP 1 Score: 287 bits (735), Expect = 2.510e-92
Identity = 141/202 (69.80%), Postives = 166/202 (82.18%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LA+AG D+VVVA DTRMS+GY I+SR  SKLH LTSKC++A+AGCKTDV TL   L+++M MYDH+  KEM+T A AQML+NTLYYRRFFPYYSFNVL GLDE+G+G+VFSYDAIGS+ER PFSASGSGQ+Y+IPL+DNLV FKTR D  P  ++ E V +VK+ FVTAGERDIYTGD +EI VI KD   T  FPLKKD
Sbjct:   95 TTLAVAGKDFVVVAGDTRMSSGYEILSRKVSKLHPLTSKCILAAAGCKTDVDTLTNMLNIKMQMYDHDCGKEMSTTAAAQMLSNTLYYRRFFPYYSFNVLAGLDEEGRGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRTDVMPDFTSEEAVNIVKDAFVTAGERDIYTGDTLEISVIKKDGIETITFPLKKD 296
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BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7S2FLM8_9STRA (Proteasome subunit beta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FLM8_9STRA)

HSP 1 Score: 281 bits (720), Expect = 1.600e-90
Identity = 142/202 (70.30%), Postives = 165/202 (81.68%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LA++G D+VVVA DTRMS+GY I SR+  KLHQLTSK V+A+AGCKTDV TL   L  RM MY+H+  KEM+T AVAQML+NTLY RRFFPYYSFNVL GLDE+GKG+VFSYDAIGS+ER PFSASGSGQ+Y+IPL+DNLV FKTR D  P  +  E V +VK+ FVTAGERDIYTGDAVEI VIS    +T++FPLKKD
Sbjct:   63 TTLAVSGKDFVVVAGDTRMSSGYEIKSRNVPKLHQLTSKTVLAAAGCKTDVDTLTNLLRTRMQMYEHDCNKEMSTTAVAQMLSNTLYGRRFFPYYSFNVLAGLDEEGKGAVFSYDAIGSYERTPFSASGSGQSYLIPLMDNLVTFKTRLDPVPDMTVEEIVSIVKDAFVTAGERDIYTGDAVEIKVISATGVTTELFPLKKD 264
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7S2SKB7_9STRA (Proteasome subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKB7_9STRA)

HSP 1 Score: 280 bits (716), Expect = 4.940e-90
Identity = 137/202 (67.82%), Postives = 165/202 (81.68%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAIAG D+VVVAADTR+S+GY I+SR+ SKLH LT +CV+A+AGCKTDV TL   L  RM MY+H+M K M TPAVAQML+NTLYYRRFFPYYSFNVL G+D  GKG+VFSYDAIGS+ERVP+S+SGSGQ Y++PL+DNLV FK RQD  P  +  E V +VK+ F+TAGERDIYTGDAVEI VI+    ++++ PLKKD
Sbjct:   55 TTLAIAGKDFVVVAADTRLSSGYEILSRNVSKLHPLTGRCVLAAAGCKTDVDTLRNTLHARMQMYEHDMGKAMDTPAVAQMLSNTLYYRRFFPYYSFNVLAGIDSDGKGAVFSYDAIGSYERVPYSSSGSGQNYMVPLMDNLVCFKNRQDTPPELTMEEVVRIVKDAFITAGERDIYTGDAVEIKVITASGVASEIMPLKKD 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: K0S6G4_THAOC (Proteasome subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6G4_THAOC)

HSP 1 Score: 274 bits (700), Expect = 3.150e-87
Identity = 133/202 (65.84%), Postives = 162/202 (80.20%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAI+G DY VVAADTR+S+GY I+SR+ SKLH LT +CV+ SAGCKTDV  L   LD++M +Y HN  K MATP+VAQML NTLYY+RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER PFSASGSGQ+++IPL+DN++  K R DE+    A E VE+VK+ F+TAGERDIYTGDAV+I+VI+KD    Q F LK D
Sbjct:   82 TTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283
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BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7S2N0R8_9STRA (Proteasome subunit beta n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2N0R8_9STRA)

HSP 1 Score: 273 bits (697), Expect = 6.020e-87
Identity = 132/202 (65.35%), Postives = 164/202 (81.19%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAI+G DY VVAADTR+S+GY I+SRD +KLH LT KCV+ SAGCKTDV  L   LD++M +Y HN  K M+TP+VAQML+NTLYY+RFFPYY+FNVL G+D +GKG+V+SYDAIGSFER PFSASGSGQ+++IPL+DN++  K R DEK    + E VE+VK+ FVTAGERDIYTGDAVEI+VI+K+    ++F LK D
Sbjct:   70 TTLAISGPDYAVVAADTRLSSGYEILSRDVTKLHALTEKCVLGSAGCKTDVDQLRSVLDIKMKIYAHNHRKPMSTPSVAQMLSNTLYYKRFFPYYAFNVLAGVDAEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVIAHKNRCDEKRDLPSEEVVEIVKDAFVTAGERDIYTGDAVEIMVITKEGIKKEIFKLKAD 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A6U3TS88_9STRA (Proteasome subunit beta n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TS88_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.850e-85
Identity = 131/202 (64.85%), Postives = 160/202 (79.21%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            T LAI+G DY VVAADTR+S+GY I+SR+ SKLH LT +CV+ SAGCKTDV  L   LD++M +Y HN  K MATP+VAQML NTLY +RFFPYYSFNVL G+D +GKG+V+SYDAIGSFER PFSASGSGQ ++IPL+DN++  K R DE+      E VE+VK+ F+TAGERDIYTGDAVEI +I+K+   T+MF LK D
Sbjct:   79 TTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTERCVLGSAGCKTDVDQLRSVLDIKMKVYQHNHRKPMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRCDEQRDLPVEEVVEIVKDAFLTAGERDIYTGDAVEIKIITKEGIRTEMFNLKAD 280
[Close]
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Match: A0A7R9WTK2_9STRA (Proteasome subunit beta n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WTK2_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.380e-85
Identity = 126/202 (62.38%), Postives = 161/202 (79.70%), Query Frame = 3 
Query:    3 TCLAIAGADYVVVAADTRMSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELFVTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD 608
            TC+AIAG DY V+AADTR+S+GY I+SR+ SKLH LTSKC++ SAGCKTDV  L   +D++M MY H+ +KEM+TPAVAQML+ TLYY+RFFPYY+FNV  G+DE+GKG+++SYDAIGS+ER   +A+GSGQ Y+IPLLDN++  + R DEK      E VELVK++F++ GERDIYTGD VEI V++KD   T MF LK D
Sbjct:   55 TCIAIAGKDYAVIAADTRLSSGYEILSRNVSKLHSLTSKCILGSAGCKTDVDQLRSVMDIKMKMYHHDHQKEMSTPAVAQMLSTTLYYKRFFPYYAFNVFGGIDEEGKGAIYSYDAIGSYERTAVTATGSGQAYVIPLLDNVIAHRNRTDEKRDIPKEEVVELVKDVFLSCGERDIYTGDQVEICVVTKDGIETTMFQLKAD 256
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12405.4909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYM7_ECTSI5.670e-13095.05Proteasome subunit beta n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC48_9STRA7.060e-10576.73Proteasome subunit beta n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XWL8_9STRA1.820e-9268.81Proteasome subunit beta n=1 Tax=Fibrocapsa japonic... [more]
A0A7S2DDA1_9STRA2.510e-9269.80Proteasome subunit beta n=1 Tax=Dictyocha speculum... [more]
A0A7S2FLM8_9STRA1.600e-9070.30Proteasome subunit beta n=1 Tax=Florenciella parvu... [more]
A0A7S2SKB7_9STRA4.940e-9067.82Proteasome subunit beta n=1 Tax=Rhizochromulina ma... [more]
K0S6G4_THAOC3.150e-8765.84Proteasome subunit beta n=1 Tax=Thalassiosira ocea... [more]
A0A7S2N0R8_9STRA6.020e-8765.35Proteasome subunit beta n=2 Tax=Lithodesmiaceae Ta... [more]
A0A6U3TS88_9STRA1.850e-8564.85Proteasome subunit beta n=1 Tax=Skeletonema marino... [more]
A0A7R9WTK2_9STRA2.380e-8562.38Proteasome subunit beta n=1 Tax=Craspedostauros au... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12405contigM-pyrifera_M_contig12405:6560..8241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue7.3e-95
Seed eggNOG ortholog2880.D7FYM7
Preferred namePSMB1
KEGG koko:K02732
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009620,GO:0009814,GO:0009817,GO:0009896,GO:0009987,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019748,GO:0019774,GO:0019941,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0031984,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042175,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0048046,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051704,GO:0051707,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0098542,GO:0098827,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0179@2759
Ec32 ortholog descriptionProteasome, subunit alpha/beta
Ec32 orthologEc-26_002800.1
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons2
Model size1117
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12405.4909.1prot_M-pyrifera_M_contig12405.4909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12405 7066..8185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.527061-UTR-M-pyrifera_M_contig12405:6559..70651622815758.527061-UTR-M-pyrifera_M_contig12405:6559..7065Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12405 6560..7065 -
1692277555.6894603-UTR-M-pyrifera_M_contig12405:6559..70651692277555.6894603-UTR-M-pyrifera_M_contig12405:6559..7065Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12405 6560..7065 -
1622815758.5652263-UTR-M-pyrifera_M_contig12405:8185..82411622815758.5652263-UTR-M-pyrifera_M_contig12405:8185..8241Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12405 8186..8241 -
1692277555.7254355-UTR-M-pyrifera_M_contig12405:8185..82411692277555.7254355-UTR-M-pyrifera_M_contig12405:8185..8241Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12405 8186..8241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.538685-CDS-M-pyrifera_M_contig12405:7065..74831622815758.538685-CDS-M-pyrifera_M_contig12405:7065..7483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12405 7066..7483 -
1692277555.7036324-CDS-M-pyrifera_M_contig12405:7065..74831692277555.7036324-CDS-M-pyrifera_M_contig12405:7065..7483Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12405 7066..7483 -
1622815758.5517693-CDS-M-pyrifera_M_contig12405:8048..81851622815758.5517693-CDS-M-pyrifera_M_contig12405:8048..8185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12405 8049..8185 -
1692277555.7154016-CDS-M-pyrifera_M_contig12405:8048..81851692277555.7154016-CDS-M-pyrifera_M_contig12405:8048..8185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12405 8049..8185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12405.4909.1

>prot_M-pyrifera_M_contig12405.4909.1 ID=prot_M-pyrifera_M_contig12405.4909.1|Name=mRNA_M-pyrifera_M_contig12405.4909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
MSTGYSIMSRDQSKLHQLTSKCVIASAGCKTDVTTLWKELDVRMTMYDHN
MEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIG
SFERVPFSASGSGQTYIIPLLDNLVEFKTRQDEKPTRSAAETVELVKELF
VTAGERDIYTGDAVEIIVISKDDTSTQMFPLKKD*
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mRNA from alignment at M-pyrifera_M_contig12405:6560..8241-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12405.4909.1 ID=mRNA_M-pyrifera_M_contig12405.4909.1|Name=mRNA_M-pyrifera_M_contig12405.4909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1682bp|location=Sequence derived from alignment at M-pyrifera_M_contig12405:6560..8241- (Macrocystis pyrifera P11B4 male)
GCACCTGTCTTGCAATTGCAGGCGCTGATTATGTGGTAGTTGCTGCTGAT
ACTCGGATGAGCACAGGATACTCCATCATGTCCCGTGATCAGAGCAAGCT
GCACCAGCTGACGTCCAAGTGCGTTATTGCTTCTGCCGGTTGCAAGACCG
ATGTGACGACTTTGTGGAAAGAGCTAGACGTCAGGATGACCATGTGAGCT
GCCCGGTTTCGTCGCCCGCACTTCTTTCGATTGTATCACCACGAGGTGGA
ATTGCGTGGGGATATAGCTCTAGCGGCGTGTTGGTAATGTACAATATAGT
TGTCTCTAGGAACTCGCGCAGTGGGATATTTGTAGTTGTTGTCAACTTGT
GTGCGTTGGTGGACGGCGTCCGGGGACGGTCGCTTCGGGTAACCTCGAAA
GGAACCCTTGTTTTTTTGGCGCCGCCACAATTATAAAGTATTAATAGCCT
ACATACTACTCTCGTAATATATATATATGTCGACCGGGGGTCCATTCATT
GCCAGGCGGTTTTTCCTTCTCATTGTCACAGGGGCACCGTATACTGCGGA
ATACAGCCACAATCCCACCAATATATGCGCTTTGATGTCTCTCATCCTTC
GTTCGGGCTCGACGTGAGATCGCAGCATTCCTTAACCGTTGGCCCCATAG
CCTAGGTTAGAAGTTACTAATGGTGTCGTCTCAAACGCCACCGGAGAGTA
GGGGTCCGCTCTCGCCTGAACTGTTCACAAGCGATCACTTGCATATCTCT
CACGCCAGGTACGACCACAATATGGAGAAGGAGATGGCGACTCCAGCAGT
GGCGCAGATGCTGGCGAACACCCTTTACTACCGGCGATTTTTCCCGTATT
ACTCGTTCAACGTCCTGTGCGGCCTAGACGAGCAGGGGAAGGGATCTGTG
TTTTCGTACGATGCCATCGGGTCGTTTGAACGTGTGCCGTTCAGTGCGTC
GGGCTCTGGCCAGACTTATATCATTCCTCTCCTAGACAACCTGGTTGAAT
TCAAAACACGGCAAGATGAGAAGCCCACCCGCTCTGCGGCGGAAACGGTG
GAGCTAGTCAAGGAGTTGTTCGTTACTGCTGGTGAACGAGACATCTACAC
TGGTGACGCGGTTGAAATCATAGTTATATCGAAGGATGACACATCAACAC
AGATGTTTCCTTTGAAAAAAGACTGAGCTTTTCAACGGCAAGGAGTGTGG
GTCTTCAGGCTTAGTTGATTGAACCTGCGGTTGTCTCTGTTGTTCGGCAG
AATAATACAGATGCAGTATACTCACGCGGAGTAAACCGCCGGTACGTATG
TGGGTTTGATGGGATTTTGATGTTTTGTGGACGATAAGGAAATGAAGACG
GCCGGAACATGCTTGGGGAACAGGCGAGGGCAGCGCTTTTACTGGGGGTG
AACGCTGTGAACGGCGTAGAATGTCTTTATCCGGATAAGGACAGCGGTGA
AAAGTCGCCGCTACCTTCCACTACATAGGTTTGTAGGATCTCGGATATAT
TTCATGCCAATCCGCGTCGTCAGCACATTTGCGGGCTGAGTGAAGATGGA
TCTACGTCTATTATACCATAACTGAAATCGATCGCACCCGGAGAGGACAT
GCCGTCTGACACCGGTATACGTGTAAAAAAAAGCATGAGTTCGGTCGACA
TTGGCTCGATGGCTCGACTCAATAAAATGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12405:6560..8241-

>mRNA_M-pyrifera_M_contig12405.4909.1 ID=mRNA_M-pyrifera_M_contig12405.4909.1|Name=mRNA_M-pyrifera_M_contig12405.4909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig12405:6560..8241- (Macrocystis pyrifera P11B4 male)
ATGAGCACAGGATACTCCATCATGTCCCGTGATCAGAGCAAGCTGCACCA
GCTGACGTCCAAGTGCGTTATTGCTTCTGCCGGTTGCAAGACCGATGTGA
CGACTTTGTGGAAAGAGCTAGACGTCAGGATGACCATATGAGCACAGGAT
ACTCCATCATGTCCCGTGATCAGAGCAAGCTGCACCAGCTGACGTCCAAG
TGCGTTATTGCTTCTGCCGGTTGCAAGACCGATGTGACGACTTTGTGGAA
AGAGCTAGACGTCAGGATGACCATGTACGACCACAATATGGAGAAGGAGA
TGGCGACTCCAGCAGTGGCGCAGATGCTGGCGAACACCCTTTACTACCGG
CGATTTTTCCCGTATTACTCGTTCAACGTCCTGTGCGGCCTAGACGAGCA
GGGGAAGGGATCTGTGTTTTCGTACGATGCCATCGGGTCGTTTGAACGTG
TGCCGTTCAGTGCGTCGGGCTCTGGCCAGACTTATATCATTCCTCTCCTA
GACAACCTGGTTGAATTCAAAACACGGCAAGATGAGAAGCCCACCCGCTC
TGCGGCGGAAACGGTGGAGCTAGTCAAGGAGTTGTTCGTTACTGCTGGTG
AACGAGACATCTACACTGGTGACGCGGTTGAAATCATAGTTATATCGAAG
GATGACACATCAACACAGATGTTTCCTTTGAAAAAAGACTGAGTACGACC
ACAATATGGAGAAGGAGATGGCGACTCCAGCAGTGGCGCAGATGCTGGCG
AACACCCTTTACTACCGGCGATTTTTCCCGTATTACTCGTTCAACGTCCT
GTGCGGCCTAGACGAGCAGGGGAAGGGATCTGTGTTTTCGTACGATGCCA
TCGGGTCGTTTGAACGTGTGCCGTTCAGTGCGTCGGGCTCTGGCCAGACT
TATATCATTCCTCTCCTAGACAACCTGGTTGAATTCAAAACACGGCAAGA
TGAGAAGCCCACCCGCTCTGCGGCGGAAACGGTGGAGCTAGTCAAGGAGT
TGTTCGTTACTGCTGGTGAACGAGACATCTACACTGGTGACGCGGTTGAA
ATCATAGTTATATCGAAGGATGACACATCAACACAGATGTTTCCTTTGAA
AAAAGACTGA
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