mRNA_M-pyrifera_M_contig124048.4908.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124048.4908.1
Unique NamemRNA_M-pyrifera_M_contig124048.4908.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A3S8U919_9RHOB (Methylmalonyl-CoA epimerase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A3S8U919_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 8.960e-8
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE 102
            MIGRLNHVAIAVPD+EAAA  YRG+LGAT+ A +
Sbjct:    1 MIGRLNHVAIAVPDLEAAAAQYRGALGATVGAPQ 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A2E3EJ57_9PROT (Methylmalonyl-CoA epimerase n=7 Tax=Tistrella TaxID=171436 RepID=A0A2E3EJ57_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 1.260e-7
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSA 96
            MIGRLNHVAI VPDIEAAAN YR + GAT+SA
Sbjct:    1 MIGRLNHVAIVVPDIEAAANLYRNTFGATVSA 32
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A6N9BDW7_9PROT (Methylmalonyl-CoA epimerase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BDW7_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.780e-7
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE 102
            MIGRLNHVAIAVPD+EA A  YRG+LGA +SA +
Sbjct:    1 MIGRLNHVAIAVPDLEAGARAYRGALGACISAPQ 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A2E8U454_9PROT (Methylmalonyl-CoA epimerase n=2 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E8U454_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 2.510e-7
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLS 93
            MIGRLNHVAIAVPD+EAA  TYR +LGAT+S
Sbjct:    1 MIGRLNHVAIAVPDLEAATTTYRDTLGATVS 31
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A1G6WCU2_9PROT (Methylmalonyl-CoA epimerase n=2 Tax=Kordiimonas TaxID=288021 RepID=A0A1G6WCU2_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 2.510e-7
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLS 93
            MIGRLNHVAI VPD+EAAA TYR +LGAT+S
Sbjct:    1 MIGRLNHVAIVVPDLEAAARTYRDTLGATVS 31
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A5M6IMK7_9PROT (Methylmalonyl-CoA epimerase n=1 Tax=Rhodovastum atsumiense TaxID=504468 RepID=A0A5M6IMK7_9PROT)

HSP 1 Score: 52.0 bits (123), Expect = 2.510e-7
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLS 93
            M+GRLNHVAIAVPD+EAAA TYR  LGAT+S
Sbjct:    1 MLGRLNHVAIAVPDLEAAARTYREKLGATVS 31
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A192IIT6_9HYPH (Methylmalonyl-CoA epimerase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IIT6_9HYPH)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-7
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE 102
            MIGRLNHVAIAVPD+EAAA TYR +LGA +SA +
Sbjct:    1 MIGRLNHVAIAVPDLEAAAATYRDTLGAKVSAPQ 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A3D9BRV0_9RHOB (Methylmalonyl-CoA epimerase n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A3D9BRV0_9RHOB)

HSP 1 Score: 51.6 bits (122), Expect = 3.540e-7
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE 102
            MIGRLNHVAIAVPD+EAAA  YRG+LGA++ A +
Sbjct:    1 MIGRLNHVAIAVPDLEAAAAQYRGALGASVGAPQ 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A4Y6RW57_9HYPH (Methylmalonyl-CoA epimerase n=18 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A4Y6RW57_9HYPH)

HSP 1 Score: 51.6 bits (122), Expect = 3.540e-7
Identity = 27/34 (79.41%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE 102
            MIGRLNHVAIAV DIEAA  TYR +LGA +SAKE
Sbjct:    1 MIGRLNHVAIAVSDIEAATATYRDTLGADVSAKE 34
[Close]
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Match: A0A7X2FWU2_9PROT (Methylmalonyl-CoA epimerase n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2FWU2_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 3.540e-7
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 MIGRLNHVAIAVPDIEAAANTYRGSLGATLSA 96
            MIGRLNHVAI VPD+EAA+  YRG+LGAT+SA
Sbjct:    1 MIGRLNHVAIVVPDLEAASAIYRGALGATVSA 32
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124048.4908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3S8U919_9RHOB8.960e-876.47Methylmalonyl-CoA epimerase n=3 Tax=Rhodobacterale... [more]
A0A2E3EJ57_9PROT1.260e-781.25Methylmalonyl-CoA epimerase n=7 Tax=Tistrella TaxI... [more]
A0A6N9BDW7_9PROT1.780e-773.53Methylmalonyl-CoA epimerase n=1 Tax=Alphaproteobac... [more]
A0A2E8U454_9PROT2.510e-780.65Methylmalonyl-CoA epimerase n=2 Tax=Magnetovibrio ... [more]
A0A1G6WCU2_9PROT2.510e-780.65Methylmalonyl-CoA epimerase n=2 Tax=Kordiimonas Ta... [more]
A0A5M6IMK7_9PROT2.510e-780.65Methylmalonyl-CoA epimerase n=1 Tax=Rhodovastum at... [more]
A0A192IIT6_9HYPH2.560e-776.47Methylmalonyl-CoA epimerase n=2 Tax=Alphaproteobac... [more]
A0A3D9BRV0_9RHOB3.540e-773.53Methylmalonyl-CoA epimerase n=4 Tax=Rhodobacterale... [more]
A0A4Y6RW57_9HYPH3.540e-779.41Methylmalonyl-CoA epimerase n=18 Tax=Alphaproteoba... [more]
A0A7X2FWU2_9PROT3.540e-778.13Methylmalonyl-CoA epimerase n=1 Tax=Alphaproteobac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124048contigM-pyrifera_M_contig124048:419..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.490306-CDS-M-pyrifera_M_contig124048:418..5201622815758.490306-CDS-M-pyrifera_M_contig124048:418..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124048 419..520 +
1692277555.679525-CDS-M-pyrifera_M_contig124048:418..5201692277555.679525-CDS-M-pyrifera_M_contig124048:418..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124048 419..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124048.4908.1prot_M-pyrifera_M_contig124048.4908.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124048 419..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124048.4908.1

>prot_M-pyrifera_M_contig124048.4908.1 ID=prot_M-pyrifera_M_contig124048.4908.1|Name=mRNA_M-pyrifera_M_contig124048.4908.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=34bp
MIGRLNHVAIAVPDIEAAANTYRGSLGATLSAKE
back to top

mRNA from alignment at M-pyrifera_M_contig124048:419..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124048.4908.1 ID=mRNA_M-pyrifera_M_contig124048.4908.1|Name=mRNA_M-pyrifera_M_contig124048.4908.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=102bp|location=Sequence derived from alignment at M-pyrifera_M_contig124048:419..520+ (Macrocystis pyrifera P11B4 male)
ATGATCGGACGTTTGAATCATGTAGCCATCGCAGTACCAGATATTGAAGC
TGCAGCAAACACCTATCGTGGTAGCCTTGGTGCTACTCTTTCTGCAAAAG
AA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig124048:419..520+

>mRNA_M-pyrifera_M_contig124048.4908.1 ID=mRNA_M-pyrifera_M_contig124048.4908.1|Name=mRNA_M-pyrifera_M_contig124048.4908.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig124048:419..520+ (Macrocystis pyrifera P11B4 male)
ATGATCGGACGTTTGAATCATGTAGCCATCGCAGTACCAGATATTGAAGC
TGCAGCAAACACCTATCGTGGTAGCCTTGGTGCTACTCTTTCTGCAAAAG
AAATGATCGGACGTTTGAATCATGTAGCCATCGCAGTACCAGATATTGAA
GCTGCAGCAAACACCTATCGTGGTAGCCTTGGTGCTACTCTTTCTGCAAA
AGAA
back to top