mRNA_M-pyrifera_M_contig124038.4907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124038.4907.1
Unique NamemRNA_M-pyrifera_M_contig124038.4907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A0A2E7KJM4_9PLAN (HTH gntR-type domain-containing protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJM4_9PLAN)

HSP 1 Score: 138 bits (348), Expect = 2.620e-38
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    4 RKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKPS 201
            RKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKPS
Sbjct:  287 RKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKPS 352
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A0A517Q6F1_9PLAN (DNA-binding transcriptional repressor MngR n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q6F1_9PLAN)

HSP 1 Score: 95.1 bits (235), Expect = 9.540e-22
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 PRKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKP 198
            PRKKQP IVVAD FAR+ APC FPHI+  LSPEAYGQEI RML++Q+ GA P  LF NV VELV P
Sbjct:  286 PRKKQPEIVVADRFARDTAPCPFPHIQAQLSPEAYGQEIARMLIQQVQGARPETLFHNVPVELVVP 351
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A6CBH2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia maris DSM 8797 TaxID=344747 RepID=A6CBH2_9PLAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.350e-19
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 PRKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKP 198
            P+ ++PV+VVAD FAR+Q+ C FP+IR CLSP AYGQEIGRML+RQ+NG    ++   V VELV+P
Sbjct:  121 PKSRRPVLVVADRFARDQSDCPFPYIRACLSPVAYGQEIGRMLLRQVNGEDALSMETRVEVELVQP 186
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A0A3D3RE30_9PLAN (HTH gntR-type domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A3D3RE30_9PLAN)

HSP 1 Score: 85.5 bits (210), Expect = 3.780e-18
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 PRKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKP 198
            P+ ++PV+VVAD FAR+Q+ C FP+IR CLSP AYGQEIGRML+RQ+NG    ++   V VELV+P
Sbjct:  285 PKSRRPVLVVADRFARDQSDCPFPYIRACLSPVAYGQEIGRMLMRQVNGEDALSMETRVEVELVQP 350
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A0A6I6A969_9PLAN (GntR family transcriptional regulator n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6A969_9PLAN)

HSP 1 Score: 85.1 bits (209), Expect = 5.030e-18
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    4 RKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKP 198
            +KKQP IVVAD FAR   PC FPHI+  LSPE YGQEI RML+RQ+ G  P  LF +V VELV P
Sbjct:  287 QKKQPEIVVADRFARNTTPCQFPHIQAQLSPEEYGQEIARMLIRQVLGTQPETLFHDVPVELVSP 351
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BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Match: A0A2E2CAQ8_9PLAN (HTH gntR-type domain-containing protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2CAQ8_9PLAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.860e-17
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 PRKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGAAPRNLFCNVSVELVKP 198
            P  ++PV+VVAD FAREQ  C FP IR CLSP AYG+EIGRML+RQ+NG   +++   V+VELV+P
Sbjct:  285 PVSRRPVLVVADRFAREQVSCPFPCIRACLSPVAYGEEIGRMLIRQVNGEDAQSMDTRVTVELVQP 350
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124038.4907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2E7KJM4_9PLAN2.620e-38100.00HTH gntR-type domain-containing protein n=4 Tax=Gi... [more]
A0A517Q6F1_9PLAN9.540e-2271.21DNA-binding transcriptional repressor MngR n=3 Tax... [more]
A6CBH2_9PLAN3.350e-1960.61Uncharacterized protein n=1 Tax=Gimesia maris DSM ... [more]
A0A3D3RE30_9PLAN3.780e-1860.61HTH gntR-type domain-containing protein n=6 Tax=Pl... [more]
A0A6I6A969_9PLAN5.030e-1864.62GntR family transcriptional regulator n=1 Tax=Gime... [more]
A0A2E2CAQ8_9PLAN1.860e-1760.61HTH gntR-type domain-containing protein n=2 Tax=Pl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124038contigM-pyrifera_M_contig124038:3..206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.4529545-CDS-M-pyrifera_M_contig124038:2..2061622815758.4529545-CDS-M-pyrifera_M_contig124038:2..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124038 3..206 +
1692277555.6708713-CDS-M-pyrifera_M_contig124038:2..2061692277555.6708713-CDS-M-pyrifera_M_contig124038:2..206Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124038 3..206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124038.4907.1prot_M-pyrifera_M_contig124038.4907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124038 3..206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124038.4907.1

>prot_M-pyrifera_M_contig124038.4907.1 ID=prot_M-pyrifera_M_contig124038.4907.1|Name=mRNA_M-pyrifera_M_contig124038.4907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
PRKKQPVIVVADHFAREQAPCLFPHIRPCLSPEAYGQEIGRMLVRQMNGA
APRNLFCNVSVELVKPS*
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mRNA from alignment at M-pyrifera_M_contig124038:3..206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124038.4907.1 ID=mRNA_M-pyrifera_M_contig124038.4907.1|Name=mRNA_M-pyrifera_M_contig124038.4907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig124038:3..206+ (Macrocystis pyrifera P11B4 male)
CCGCGGAAGAAACAGCCTGTTATAGTGGTCGCGGATCATTTTGCCCGCGA
GCAAGCCCCCTGCCTGTTCCCGCATATTCGCCCCTGCCTCTCTCCCGAAG
CTTATGGGCAGGAGATTGGCAGGATGCTGGTCAGGCAGATGAATGGGGCA
GCGCCACGAAATCTGTTTTGCAACGTTTCAGTTGAGCTCGTCAAACCGTC
CTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124038:3..206+

>mRNA_M-pyrifera_M_contig124038.4907.1 ID=mRNA_M-pyrifera_M_contig124038.4907.1|Name=mRNA_M-pyrifera_M_contig124038.4907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig124038:3..206+ (Macrocystis pyrifera P11B4 male)
CCGCGGAAGAAACAGCCTGTTATAGTGGTCGCGGATCATTTTGCCCGCGA
GCAAGCCCCCTGCCTGTTCCCGCATATTCGCCCCTGCCTCTCTCCCGAAG
CTTATGGGCAGGAGATTGGCAGGATGCTGGTCAGGCAGATGAATGGGGCA
GCGCCACGAAATCTGTTTTGCAACGTTTCAGTTGAGCTCGTCAAACCGTC
CTGACCGCGGAAGAAACAGCCTGTTATAGTGGTCGCGGATCATTTTGCCC
GCGAGCAAGCCCCCTGCCTGTTCCCGCATATTCGCCCCTGCCTCTCTCCC
GAAGCTTATGGGCAGGAGATTGGCAGGATGCTGGTCAGGCAGATGAATGG
GGCAGCGCCACGAAATCTGTTTTGCAACGTTTCAGTTGAGCTCGTCAAAC
CGTCCTGA
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