mRNA_M-pyrifera_M_contig124032.4906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig124032.4906.1
Unique NamemRNA_M-pyrifera_M_contig124032.4906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A517Q115_9PLAN (Tetraacyldisaccharide 4'-kinase n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q115_9PLAN)

HSP 1 Score: 87.8 bits (216), Expect = 4.150e-19
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILRKT 165
            G +A ++GAELILTTAKDLVKISEQ+LSGLPVWAV+IGAE+VQG A FEEIL+KT
Sbjct:  291 GVQAERAGAELILTTAKDLVKISEQRLSGLPVWAVDIGAELVQGRAAFEEILQKT 345          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A6I6ACG1_9PLAN (Tetraacyldisaccharide 4'-kinase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6ACG1_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 5.880e-17
Identity = 46/55 (83.64%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILRKT 165
            GSEA +SGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQG      ILRK+
Sbjct:  292 GSEAERSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGRL----ILRKS 342          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A518I6E4_9PLAN (Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I6E4_9PLAN)

HSP 1 Score: 74.7 bits (182), Expect = 2.670e-14
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G EAA + A+LILTT+KDLVKISEQKLS LPVWAVEIGAEI +G   FE IL+
Sbjct:  291 GVEAANASADLILTTSKDLVKISEQKLSELPVWAVEIGAEITEGREAFEGILQ 343          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A517R9E9_9PLAN (Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R9E9_9PLAN)

HSP 1 Score: 70.5 bits (171), Expect = 9.710e-13
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G +AA + AELILTT+KDLVK SEQKLS +PVW+VEIGAEI++G   FE +L+
Sbjct:  308 GVQAANASAELILTTSKDLVKTSEQKLSEIPVWSVEIGAEIIEGNEVFEGLLQ 360          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A517W3D9_9PLAN (Tetraacyldisaccharide 4'-kinase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517W3D9_9PLAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.260e-12
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G+ A  + A+LILTT KDLVK+SE KL+G+PVWAVEIG EI  G  D++EIL+
Sbjct:  291 GTHATAASADLILTTCKDLVKMSEHKLAGVPVWAVEIGVEITAGREDYQEILQ 343          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A350KBX8_9PLAN (Tetraacyldisaccharide 4'-kinase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KBX8_9PLAN)

HSP 1 Score: 57.0 bits (136), Expect = 8.500e-9
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G +A  +  +LILTT KDLVK+SE    G+PVW VEIG E+ +G+   E+IL+
Sbjct:   71 GGQAKGADVDLILTTCKDLVKLSEPMFCGVPVWGVEIGVELREGSEFLEQILQ 123          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A6CFB9_9PLAN (Tetraacyldisaccharide 4'-kinase n=5 Tax=Gimesia TaxID=1649453 RepID=A6CFB9_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 9.140e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G +A ++  +LILTT KDLVK+SE    G+PVW VEIG E+ +G+A  E+IL+
Sbjct:  292 GVQAKEADVDLILTTCKDLVKLSELMFCGVPVWGVEIGVELREGSAFLEQILQ 344          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A517VEA8_9PLAN (Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VEA8_9PLAN)

HSP 1 Score: 58.5 bits (140), Expect = 1.720e-8
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEEILR 159
            G++A ++  +LILTT KDLVK+SE    G+PVW VEIG EI +G+   E++L+
Sbjct:  292 GAQAREAEVDLILTTGKDLVKMSEPMFCGVPVWGVEIGVEIREGSEFLEQVLQ 344          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A4P5Y8S5_9BACT (Tetraacyldisaccharide 4'-kinase n=1 Tax=Planctomycetia bacterium TaxID=2052181 RepID=A0A4P5Y8S5_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.140e-7
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFE 147
            G  A  + A+++LTT KDLVKI + +L G PVWAV+IG EI++GA   E
Sbjct:  291 GENAKSANADVLLTTHKDLVKIRDTELGGRPVWAVQIGTEIIRGAPMLE 339          
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Match: A0A5C9CH25_9BACT (Tetraacyldisaccharide 4'-kinase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A5C9CH25_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.040e-6
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFE 147
            G +AA + A L+LTT KDLVKI   +L   P+WAV+IG EIV+GA   E
Sbjct:  304 GQQAAAANASLLLTTHKDLVKIPGTELQSRPLWAVQIGTEIVRGAPVLE 352          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig124032.4906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A517Q115_9PLAN4.150e-1980.00Tetraacyldisaccharide 4'-kinase n=2 Tax=Gimesia pa... [more]
A0A6I6ACG1_9PLAN5.880e-1783.64Tetraacyldisaccharide 4'-kinase n=8 Tax=Gimesia Ta... [more]
A0A518I6E4_9PLAN2.670e-1473.58Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia fu... [more]
A0A517R9E9_9PLAN9.710e-1366.04Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia al... [more]
A0A517W3D9_9PLAN1.260e-1262.26Tetraacyldisaccharide 4'-kinase n=2 Tax=Gimesia aq... [more]
A0A350KBX8_9PLAN8.500e-950.94Tetraacyldisaccharide 4'-kinase (Fragment) n=1 Tax... [more]
A6CFB9_9PLAN9.140e-952.83Tetraacyldisaccharide 4'-kinase n=5 Tax=Gimesia Ta... [more]
A0A517VEA8_9PLAN1.720e-850.94Tetraacyldisaccharide 4'-kinase n=1 Tax=Gimesia al... [more]
A0A4P5Y8S5_9BACT2.140e-753.06Tetraacyldisaccharide 4'-kinase n=1 Tax=Planctomyc... [more]
A0A5C9CH25_9BACT1.040e-655.10Tetraacyldisaccharide 4'-kinase (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig124032contigM-pyrifera_M_contig124032:3..191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815758.4189014-CDS-M-pyrifera_M_contig124032:2..1911622815758.4189014-CDS-M-pyrifera_M_contig124032:2..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124032 3..191 +
1692277555.6587489-CDS-M-pyrifera_M_contig124032:2..1911692277555.6587489-CDS-M-pyrifera_M_contig124032:2..191Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig124032 3..191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig124032.4906.1prot_M-pyrifera_M_contig124032.4906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig124032 3..191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig124032.4906.1

>prot_M-pyrifera_M_contig124032.4906.1 ID=prot_M-pyrifera_M_contig124032.4906.1|Name=mRNA_M-pyrifera_M_contig124032.4906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
GSEAAQSGAELILTTAKDLVKISEQKLSGLPVWAVEIGAEIVQGAADFEE
ILRKTGLAESGE*
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mRNA from alignment at M-pyrifera_M_contig124032:3..191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig124032.4906.1 ID=mRNA_M-pyrifera_M_contig124032.4906.1|Name=mRNA_M-pyrifera_M_contig124032.4906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig124032:3..191+ (Macrocystis pyrifera P11B4 male)
GGCTCAGAGGCAGCACAGTCGGGAGCCGAGTTGATTTTGACGACTGCGAA AGACCTGGTGAAAATTAGTGAACAAAAACTGTCAGGGCTTCCGGTCTGGG CGGTGGAAATCGGTGCGGAAATCGTGCAGGGAGCGGCTGATTTTGAGGAA ATCCTGCGGAAAACGGGGCTGGCGGAGTCGGGGGAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig124032:3..191+

>mRNA_M-pyrifera_M_contig124032.4906.1 ID=mRNA_M-pyrifera_M_contig124032.4906.1|Name=mRNA_M-pyrifera_M_contig124032.4906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig124032:3..191+ (Macrocystis pyrifera P11B4 male)
GGCTCAGAGGCAGCACAGTCGGGAGCCGAGTTGATTTTGACGACTGCGAA
AGACCTGGTGAAAATTAGTGAACAAAAACTGTCAGGGCTTCCGGTCTGGG
CGGTGGAAATCGGTGCGGAAATCGTGCAGGGAGCGGCTGATTTTGAGGAA
ATCCTGCGGAAAACGGGGCTGGCGGAGTCGGGGGAATAAGGCTCAGAGGC
AGCACAGTCGGGAGCCGAGTTGATTTTGACGACTGCGAAAGACCTGGTGA
AAATTAGTGAACAAAAACTGTCAGGGCTTCCGGTCTGGGCGGTGGAAATC
GGTGCGGAAATCGTGCAGGGAGCGGCTGATTTTGAGGAAATCCTGCGGAA
AACGGGGCTGGCGGAGTCGGGGGAATAA
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