mRNA_M-pyrifera_M_contig12398.4894.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI) HSP 1 Score: 134 bits (337), Expect = 2.740e-35 Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 3
Query: 3 KGESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWEGD 254
KGESETDAGIVIAA+ AEK+ ASQGRVVA+GEGRT S G + CPFK GD+VKF+ YAPVEIKI+G YYAVVRMVDC+ARWEG+
Sbjct: 192 KGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARWEGE 275
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.770e-17 Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = 3
Query: 3 KGESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWE 248
+ E TD GIVI+A A K+ S+G+VVAVG GRT S G L C +PG+ VKF YA +EI ++ + YAVVRMVDCL++W
Sbjct: 180 RSEGRTDTGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLESESYAVVRMVDCLSKWS 261
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A7S1ZF55_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF55_TRICV) HSP 1 Score: 65.5 bits (158), Expect = 2.150e-9 Identity = 37/84 (44.05%), Postives = 49/84 (58.33%), Query Frame = 3
Query: 15 ETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVD--CLARWEGDLA 260
ET +GIV+AA+ D +G V VGEGR S G P K G++VKF Y ++KI+G+ Y+ VRMVD C E D+A
Sbjct: 178 ETASGIVVAASVTRGDVPCEGTVFKVGEGRMCSKGEFTPSPVKVGETVKFKDYGGNDVKIEGELYSAVRMVDILCSIPQEEDMA 261
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A3C0KSD2_9DELT (Co-chaperonin GroES n=1 Tax=Syntrophus sp. (in: Bacteria) TaxID=48412 RepID=A0A3C0KSD2_9DELT) HSP 1 Score: 59.3 bits (142), Expect = 2.520e-8 Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 3
Query: 9 ESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWEG 251
E +T GI+I A EK +G+++AVG+G+TT G L + K GD V F YA E+KI G+ Y ++R D L EG
Sbjct: 18 EGKTKGGIIIPDTAKEKPM--EGKIIAVGKGKTTEDGKLVKLDVKAGDKVLFSKYAGTEVKIDGKEYLIMREDDILGVIEG 96
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A7S2LH03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH03_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.450e-7 Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 3
Query: 15 ETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLA 239
ETD+GIV+AA+ + QG VV VGEGR S G P G+ VKF YA ++K+ G+ + VRMVD L+
Sbjct: 186 ETDSGIVVAASVTKDLEFCQGTVVKVGEGRMCSTGEFTPSPVGVGEFVKFRDYAGNDVKLGGEDFCCVRMVDILS 260
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A4Q6FR31_9PROT (Co-chaperonin GroES n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6FR31_9PROT) HSP 1 Score: 56.6 bits (135), Expect = 2.490e-7 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 3
Query: 9 ESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCL 236
E +T +GI+I AA EK +GRVVAVG GRT GT+ + K GD+V F Y+ E+K++G+ + ++R D L
Sbjct: 18 EQKTASGIIIPDAAKEKPV--EGRVVAVGNGRTLDNGTVQKPDVKSGDTVLFGKYSGTEVKVEGEEFLILREDDIL 91
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A2M7DD36_9BACT (Co-chaperonin GroES n=1 Tax=bacterium (Candidatus Gribaldobacteria) CG02_land_8_20_14_3_00_41_15 TaxID=2014270 RepID=A0A2M7DD36_9BACT) HSP 1 Score: 56.6 bits (135), Expect = 2.550e-7 Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 3
Query: 9 ESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWE 248
E +T AGI++ +A EK+ QG+++AVG GRT + G K GD V F Y P E KI G+ Y + + D LA E
Sbjct: 18 EEKTKAGIILPESA-EKERPEQGKIIAVGPGRTVASGKTIPLHVKVGDKVLFTKYGPNEFKIDGKEYLIAKEEDILAIIE 96
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A7C4W9M0_9DELT (Co-chaperonin GroES n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C4W9M0_9DELT) HSP 1 Score: 55.5 bits (132), Expect = 6.770e-7 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 3
Query: 9 ESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWE 248
E +T GI+I A EK S+GRV+AVG+GR GT K GD + F YA E+KI G+ + ++R D LA E
Sbjct: 18 EEKTKGGIIIPDTAKEKP--SEGRVIAVGDGRIKEDGTKIPMELKKGDRILFSKYAGTEVKIDGEDHLIMREDDVLAVIE 95
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A2M7CHB0_9DELT (Co-chaperonin GroES n=3 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A2M7CHB0_9DELT) HSP 1 Score: 55.5 bits (132), Expect = 7.090e-7 Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 3
Query: 9 ESETDAGIVIAAAAAEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLARWEG 251
E +T GI+I A EK +G++VAVG+G+TT G L K GD + F Y+ EIK++G+ ++R D L EG
Sbjct: 18 EEKTKGGIIIPDTAKEKP--QEGKIVAVGKGKTTEEGKLIPLDVKTGDKILFGKYSGTEIKVEGEELLIMREEDILGIIEG 96
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Match: A0A1J4WEP9_9BACT (Co-chaperonin GroES n=3 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A1J4WEP9_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 9.660e-7 Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 3
Query: 51 AEKDTASQGRVVAVGEGRTTSVGTLAECPFKPGDSVKFLSYAPVEIKIQGQYYAVVRMVDCLA 239
A+KD QG+VVAVG G+T S G E K GD V F Y P ++KI+G+ Y + + D LA
Sbjct: 31 AQKDEPEQGKVVAVGAGKTMSNGQKKEVEVKVGDLVLFNKYGPNKVKIEGKEYLIAKQDDILA 93 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12398.4894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig12398.4894.1 >prot_M-pyrifera_M_contig12398.4894.1 ID=prot_M-pyrifera_M_contig12398.4894.1|Name=mRNA_M-pyrifera_M_contig12398.4894.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp MPPSRSRSRGNTTPWFEWWTASPDGRETLPNLLFFCFCFLTSTWPVFGSCback to top mRNA from alignment at M-pyrifera_M_contig12398:2791..7387+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig12398.4894.1 ID=mRNA_M-pyrifera_M_contig12398.4894.1|Name=mRNA_M-pyrifera_M_contig12398.4894.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4597bp|location=Sequence derived from alignment at M-pyrifera_M_contig12398:2791..7387+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig12398:2791..7387+ >mRNA_M-pyrifera_M_contig12398.4894.1 ID=mRNA_M-pyrifera_M_contig12398.4894.1|Name=mRNA_M-pyrifera_M_contig12398.4894.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig12398:2791..7387+ (Macrocystis pyrifera P11B4 male)back to top |