mRNA_M-pyrifera_M_contig123838.4876.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123838.4876.1
Unique NamemRNA_M-pyrifera_M_contig123838.4876.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123838.4876.1 vs. uniprot
Match: K8EBP8_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EBP8_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 3.630e-7
Identity = 29/76 (38.16%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:   37 IEAVLRGWGTLRLAVEDEWGGPRSKEKHERFIDDVLDNIVRLWDGKKELAWESIDYFVVDVLATDFNIDFDDEGRE 264
            I+AV   W  L +AV +EWGG +SKEK +   ++ L+ +++  D  K+   +SI+ F+ D +A DFN+  +DE  E
Sbjct:  113 IQAVFERWTALTMAVVNEWGGFQSKEKAQSLREETLEFLLK--DSNKKD--DSIEDFLYDCIAEDFNVQLEDESHE 184
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BLAST of mRNA_M-pyrifera_M_contig123838.4876.1 vs. uniprot
Match: A0A8H7UQQ7_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7UQQ7_9FUNG)

HSP 1 Score: 50.1 bits (118), Expect = 2.830e-5
Identity = 24/74 (32.43%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   31 EAIEAVLRGWGTLRLAVEDEWGGPRSKEKHERFIDDVLDNIVRLWDGKKELAWESIDYFVVDVLATDFNIDFDD 252
            E +  VLR W  L+LAVE +WGGP S+EK E   + +++         K L    ++  +V +++ +F+ D +D
Sbjct:   11 EGLHYVLRSWSALKLAVEQDWGGPDSEEKREWMAETLVEYFGA---NAKRLDEFDVEDILVQIMSDEFHTDLED 81
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BLAST of mRNA_M-pyrifera_M_contig123838.4876.1 vs. uniprot
Match: A0A397UFP2_9GLOM (Pre-rRNA-processing protein TSR2-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UFP2_9GLOM)

HSP 1 Score: 49.3 bits (116), Expect = 4.870e-5
Identity = 25/76 (32.89%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   31 EAIEAVLRGWGTLRLAVEDEWGGPRSKEKHERFIDDVLDNIVRLWDGKKELAWESIDYFVVDVLATDFNIDFDDEG 258
            +A+  V + W  L+LAVE +WGG  S++KH+  +D V++   +   GK+  A E ++  +  V+A +FN   +D+ 
Sbjct:   13 QAVTYVFKSWTALKLAVEMQWGGVDSEDKHDWLVDVVVEYFGK--HGKETYA-EDVESILQQVMADEFNTLLEDDS 85
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BLAST of mRNA_M-pyrifera_M_contig123838.4876.1 vs. uniprot
Match: A0A1Y1I0J2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0J2_KLENI)

HSP 1 Score: 48.9 bits (115), Expect = 8.590e-5
Identity = 25/74 (33.78%), Postives = 41/74 (55.41%), Query Frame = 1 
Query:   31 EAIEAVLRGWGTLRLAVEDEWGGPRSKEKHERFIDDVLDNIVRLWDGKKELAWESIDYFVVDVLATDFNIDFDD 252
            E +   +  W  L+LAVE+EWGGPRS+E+ ++   DV++   R   GK     + ++  + D L   FN + +D
Sbjct:   23 EGVRLCMGTWTALQLAVENEWGGPRSRERLKQLEGDVVNWFYR---GKPPFYSDDLEPMLDDALVQGFNTEAED 93
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123838.4876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
K8EBP8_9CHLO3.630e-738.16Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A8H7UQQ7_9FUNG2.830e-532.43Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A397UFP2_9GLOM4.870e-532.89Pre-rRNA-processing protein TSR2-domain-containing... [more]
A0A1Y1I0J2_KLENI8.590e-533.78Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123838contigM-pyrifera_M_contig123838:38..301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPre-rRNA-processing protein TSR2
Ec32 orthologEc-28_003680.1
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.7730613-CDS-M-pyrifera_M_contig123838:37..3011622815756.7730613-CDS-M-pyrifera_M_contig123838:37..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123838 38..301 +
1692277554.8517697-CDS-M-pyrifera_M_contig123838:37..3011692277554.8517697-CDS-M-pyrifera_M_contig123838:37..301Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123838 38..301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123838.4876.1prot_M-pyrifera_M_contig123838.4876.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123838 38..301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123838.4876.1

>prot_M-pyrifera_M_contig123838.4876.1 ID=prot_M-pyrifera_M_contig123838.4876.1|Name=mRNA_M-pyrifera_M_contig123838.4876.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
FSGKAWNLCGEAIEAVLRGWGTLRLAVEDEWGGPRSKEKHERFIDDVLDN
IVRLWDGKKELAWESIDYFVVDVLATDFNIDFDDEGRE
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mRNA from alignment at M-pyrifera_M_contig123838:38..301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123838.4876.1 ID=mRNA_M-pyrifera_M_contig123838.4876.1|Name=mRNA_M-pyrifera_M_contig123838.4876.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig123838:38..301+ (Macrocystis pyrifera P11B4 male)
TTTAGTGGAAAGGCGTGGAATTTGTGTGGAGAGGCGATTGAAGCGGTGCT
TCGAGGGTGGGGAACACTGCGATTGGCTGTGGAGGATGAGTGGGGAGGTC
CTCGGTCCAAAGAGAAGCACGAACGATTCATTGATGATGTGCTTGATAAT
ATTGTGCGACTATGGGATGGGAAGAAAGAGTTGGCATGGGAAAGCATCGA
CTATTTCGTCGTAGATGTCCTTGCAACTGATTTCAACATCGATTTCGATG
ACGAAGGAAGGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123838:38..301+

>mRNA_M-pyrifera_M_contig123838.4876.1 ID=mRNA_M-pyrifera_M_contig123838.4876.1|Name=mRNA_M-pyrifera_M_contig123838.4876.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig123838:38..301+ (Macrocystis pyrifera P11B4 male)
TTTAGTGGAAAGGCGTGGAATTTGTGTGGAGAGGCGATTGAAGCGGTGCT
TCGAGGGTGGGGAACACTGCGATTGGCTGTGGAGGATGAGTGGGGAGGTC
CTCGGTCCAAAGAGAAGCACGAACGATTCATTGATGATGTGCTTGATAAT
ATTGTGCGACTATGGGATGGGAAGAAAGAGTTGGCATGGGAAAGCATCGA
CTATTTCGTCGTAGATGTCCTTGCAACTGATTTCAACATCGATTTCGATG
ACGAAGGAAGGGAATTTAGTGGAAAGGCGTGGAATTTGTGTGGAGAGGCG
ATTGAAGCGGTGCTTCGAGGGTGGGGAACACTGCGATTGGCTGTGGAGGA
TGAGTGGGGAGGTCCTCGGTCCAAAGAGAAGCACGAACGATTCATTGATG
ATGTGCTTGATAATATTGTGCGACTATGGGATGGGAAGAAAGAGTTGGCA
TGGGAAAGCATCGACTATTTCGTCGTAGATGTCCTTGCAACTGATTTCAA
CATCGATTTCGATGACGAAGGAAGGGAA
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