mRNA_M-pyrifera_M_contig123834.4874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123834.4874.1
Unique NamemRNA_M-pyrifera_M_contig123834.4874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: UPI00191144C3 (PEP-CTERM system TPR-repeat protein PrsT n=3 Tax=Skermanella TaxID=204447 RepID=UPI00191144C3)

HSP 1 Score: 63.2 bits (152), Expect = 1.060e-9
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   49 SALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAAIKE 255
            +   PA  D  +SQ F++DA+  + A +   A+IQLRNALQQD  NL AR++LGE  LR   P +A KE
Sbjct:   39 AGFTPAHADTQRSQGFYQDAIRQYEAGNAGAAVIQLRNALQQDGGNLEARLLLGEMYLRTGDPVSAEKE 107          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: UPI0013012DE9 (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Skermanella pratensis TaxID=2233999 RepID=UPI0013012DE9)

HSP 1 Score: 62.0 bits (149), Expect = 2.690e-9
Identity = 36/69 (52.17%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   49 SALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAAIKE 255
            +  APA  D  +SQ F +DAV    A     A+IQLRNALQQD NNL AR +LGE  LR   P +A KE
Sbjct:   35 AGFAPAHADPQRSQGFQQDAVRQLEAGDANAALIQLRNALQQDANNLEARQLLGELYLRTGDPVSAEKE 103          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: S6AAG0_SULDS (Putative TPR repeat:Tetratricopeptide TPR 4 n=2 Tax=Sulfuricella TaxID=935200 RepID=S6AAG0_SULDS)

HSP 1 Score: 62.0 bits (149), Expect = 2.690e-9
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   22 ATFFLLLAVSALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAA 246
            A F LL+  S    AA   +Q+ +F+EDA+  +  + +  AIIQL+NALQQD N L A ++LG + L + QP +A
Sbjct:   21 ALFALLIGFSGSIKAANKNEQASKFYEDALVRYEKKDFAGAIIQLKNALQQDANMLAAHVLLGRSFLEKGQPNSA 95          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: UPI0018DCC0D5 (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Inhella proteolytica TaxID=2795029 RepID=UPI0018DCC0D5)

HSP 1 Score: 60.8 bits (146), Expect = 6.870e-9
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:   34 LLLAVSALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAA 246
            LLLA  +L PAA    Q+  +FEDA+  F A+    A IQL+NALQQD N+LPA++++G+  L  + P+ A
Sbjct:    9 LLLATVSL-PAAAQASQAGRYFEDALKRFEAKDLDGATIQLKNALQQDRNHLPAQLLMGKVALANSDPQRA 78          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: A0A512DWI8_9PROT (Uncharacterized protein n=2 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DWI8_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 1.280e-8
Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    7 SMVSFATFFLLLAVSALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAAIKE 255
            S+++ AT F     +   PA  D  QSQ F+++ V   ++ + + A+IQLRNA+QQDP NL AR +LG+  LR     +A KE
Sbjct:    6 SLIALATCF-----TVFTPAHADTQQSQRFYDEGVQQLQSGNASAAVIQLRNAIQQDPANLKARQLLGQLYLRTGDAVSAEKE 83          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: UPI0019998C5D (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Prolixibacteraceae bacterium TaxID=2053594 RepID=UPI0019998C5D)

HSP 1 Score: 58.9 bits (141), Expect = 3.270e-8
Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   34 LLLAVSA-LAPA-AIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAA 246
            LL+A++A L PA A  ++++  ++EDA+  F+  +   AI+QL+NALQQ+P  L AR++LG+  LR+ +P AA
Sbjct:   10 LLIALTAVLQPALAAPQEEAARYYEDALSRFQQGNMAAAIVQLKNALQQEPGMLAARVLLGKAHLRQGEPAAA 82          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: A0A1J5BB14_9PROT (BTAD domain-containing protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A1J5BB14_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 8.360e-8
Identity = 32/71 (45.07%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   34 LLLAVSALAPAAIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAA 246
            LLLA +     A   +Q+  F+EDA   F       AIIQL+NALQQDP  LPA ++LG+  LR+ +P  A
Sbjct:   11 LLLAGAIPTAGAAQPEQASRFYEDAQGRFEKNDVAGAIIQLKNALQQDPKLLPAYVLLGKAHLRKGEPGPA 81          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: A0A0J8GZW7_9ALTE (Uncharacterized protein n=1 Tax=Catenovulum maritimum TaxID=1513271 RepID=A0A0J8GZW7_9ALTE)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-7
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   34 LLLAVSALAPAAID-RDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAAIKE 255
            L +A+SA   AA+   + S E++E+A+ +        A+I+L+NALQQD NN+ ARI+LG+  L   + EAA+KE
Sbjct:    7 LAIALSATLFAAVAIAETSSEYYENALQFHHKGESKAAVIELKNALQQDYNNVSARILLGKIYLANGEAEAAVKE 81          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: A0A840BVX1_9RHOO (Putative PEP-CTERM system TPR-repeat lipoprotein n=1 Tax=Niveibacterium umoris TaxID=1193620 RepID=A0A840BVX1_9RHOO)

HSP 1 Score: 55.8 bits (133), Expect = 3.980e-7
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   34 LLLAVSALAPA---AIDRDQSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLL 222
            ++LA+SAL P    A D  ++  F+EDA+  +    YT A+IQL+NALQQD   L A ++LG +LL
Sbjct:   13 MVLALSALLPGLAIAADTAKASRFYEDALARYERRDYTGAVIQLKNALQQDRKMLAAHVLLGRSLL 78          
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Match: A0A2E6GIA1_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GIA1_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 5.160e-7
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   82 QSQEFFEDAVDYFRAESYTQAIIQLRNALQQDPNNLPARIMLGETLLRENQPEAA 246
            +S E++EDA+  F  + Y  AIIQL+NALQQD  NL AR++LG+T LR     AA
Sbjct:   36 KSFEYYEDALRLFNNKDYRGAIIQLKNALQQDHRNLSARVLLGDTYLRLGNGAAA 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123834.4874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00191144C31.060e-947.83PEP-CTERM system TPR-repeat protein PrsT n=3 Tax=S... [more]
UPI0013012DE92.690e-952.17PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=S... [more]
S6AAG0_SULDS2.690e-942.67Putative TPR repeat:Tetratricopeptide TPR 4 n=2 Ta... [more]
UPI0018DCC0D56.870e-946.48PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=I... [more]
A0A512DWI8_9PROT1.280e-840.96Uncharacterized protein n=2 Tax=Skermanella aerola... [more]
UPI0019998C5D3.270e-843.84PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=P... [more]
A0A1J5BB14_9PROT8.360e-845.07BTAD domain-containing protein n=3 Tax=Betaproteob... [more]
A0A0J8GZW7_9ALTE1.140e-742.67Uncharacterized protein n=1 Tax=Catenovulum mariti... [more]
A0A840BVX1_9RHOO3.980e-745.45Putative PEP-CTERM system TPR-repeat lipoprotein n... [more]
A0A2E6GIA1_9PROT5.160e-752.73Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123834contigM-pyrifera_M_contig123834:267..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog1163617.SCD_n01984
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.COG0457 FOG TPR repeat
EggNOG OGs1MXMD@1224,2VPB3@28216,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelBetaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size255
Cds size255
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.7132528-CDS-M-pyrifera_M_contig123834:266..5211622815756.7132528-CDS-M-pyrifera_M_contig123834:266..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123834 267..521 +
1692277554.8213277-CDS-M-pyrifera_M_contig123834:266..5211692277554.8213277-CDS-M-pyrifera_M_contig123834:266..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123834 267..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123834.4874.1prot_M-pyrifera_M_contig123834.4874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123834 267..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123834.4874.1

>prot_M-pyrifera_M_contig123834.4874.1 ID=prot_M-pyrifera_M_contig123834.4874.1|Name=mRNA_M-pyrifera_M_contig123834.4874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
MRSMVSFATFFLLLAVSALAPAAIDRDQSQEFFEDAVDYFRAESYTQAII
QLRNALQQDPNNLPARIMLGETLLRENQPEAAIKE
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mRNA from alignment at M-pyrifera_M_contig123834:267..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123834.4874.1 ID=mRNA_M-pyrifera_M_contig123834.4874.1|Name=mRNA_M-pyrifera_M_contig123834.4874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig123834:267..521+ (Macrocystis pyrifera P11B4 male)
ATGCGGTCAATGGTAAGTTTCGCCACGTTTTTCCTCCTCCTCGCGGTATC GGCGCTGGCACCGGCAGCGATCGATCGCGATCAATCACAGGAATTCTTCG AAGACGCGGTCGATTATTTTCGTGCCGAGAGCTACACCCAGGCGATCATT CAGCTACGAAACGCACTGCAACAGGATCCCAACAATCTCCCCGCACGCAT CATGCTCGGCGAGACGCTGCTGCGGGAAAATCAACCCGAGGCGGCGATCA AGGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123834:267..521+

>mRNA_M-pyrifera_M_contig123834.4874.1 ID=mRNA_M-pyrifera_M_contig123834.4874.1|Name=mRNA_M-pyrifera_M_contig123834.4874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig123834:267..521+ (Macrocystis pyrifera P11B4 male)
ATGCGGTCAATGGTAAGTTTCGCCACGTTTTTCCTCCTCCTCGCGGTATC
GGCGCTGGCACCGGCAGCGATCGATCGCGATCAATCACAGGAATTCTTCG
AAGACGCGGTCGATTATTTTCGTGCCGAGAGCTACACCCAGGCGATCATT
CAGCTACGAAACGCACTGCAACAGGATCCCAACAATCTCCCCGCACGCAT
CATGCTCGGCGAGACGCTGCTGCGGGAAAATCAACCCGAGGCGGCGATCA
AGGAAATGCGGTCAATGGTAAGTTTCGCCACGTTTTTCCTCCTCCTCGCG
GTATCGGCGCTGGCACCGGCAGCGATCGATCGCGATCAATCACAGGAATT
CTTCGAAGACGCGGTCGATTATTTTCGTGCCGAGAGCTACACCCAGGCGA
TCATTCAGCTACGAAACGCACTGCAACAGGATCCCAACAATCTCCCCGCA
CGCATCATGCTCGGCGAGACGCTGCTGCGGGAAAATCAACCCGAGGCGGC
GATCAAGGAA
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