mRNA_M-pyrifera_M_contig123826.4872.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123826.4872.1
Unique NamemRNA_M-pyrifera_M_contig123826.4872.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A517W9H0_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W9H0_9PLAN)

HSP 1 Score: 103 bits (256), Expect = 9.910e-26
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 MSVTVGDAQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDSP 165
            MSVTVGDAQNYVILG+TGS+GSELS+RLVKAGHKVMLGGRDQEKLN+LSTELDSP
Sbjct:    1 MSVTVGDAQNYVILGATGSIGSELSQRLVKAGHKVMLGGRDQEKLNRLSTELDSP 55          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A518A3G0_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3G0_9PLAN)

HSP 1 Score: 75.5 bits (184), Expect = 4.260e-15
Identity = 33/55 (60.00%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 MSVTVGDAQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDSP 165
            +S ++G +  YV+LG+TG+VGSE+S+RL +AGH+VMLGGRDQ++L+ LS+ELD+P
Sbjct:    3 ISDSIGQSLGYVVLGATGAVGSEISQRLARAGHRVMLGGRDQQRLDDLSSELDAP 57          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A517WRW4_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WRW4_9PLAN)

HSP 1 Score: 72.4 bits (176), Expect = 6.330e-14
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1
Query:   19 DAQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDSP 165
            + QN+V+LG+TGSVGS+LSRRL+ AGH V+LGGRD+ KL +L  ELD+P
Sbjct:    9 EQQNFVVLGATGSVGSDLSRRLISAGHHVLLGGRDKNKLQELGAELDAP 57          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A517ZQH0_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=2 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZQH0_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 1.720e-11
Identity = 31/44 (70.45%), Postives = 41/44 (93.18%), Query Frame = 1
Query:   31 YVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDS 162
            +V+LG+TGS+GSELSRRLV +G +V+LGGR+ EKL+QLSTELD+
Sbjct:   12 FVVLGATGSIGSELSRRLVASGAQVVLGGRNSEKLDQLSTELDA 55          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A518I4X1_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I4X1_9PLAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.450e-10
Identity = 29/45 (64.44%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   22 AQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTEL 156
            +Q +VILG+TG++GSELSRRLV+AGH+V LGGR+Q++L  L+ EL
Sbjct:   10 SQKFVILGATGAIGSELSRRLVQAGHEVFLGGRNQQRLQCLAEEL 54          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A5C6AZW7_9PLAN (3-oxoacyl-[acyl-carrier-protein] reductase FabG n=1 Tax=Symmachiella macrocystis TaxID=2527985 RepID=A0A5C6AZW7_9PLAN)

HSP 1 Score: 61.2 bits (147), Expect = 8.980e-10
Identity = 29/44 (65.91%), Postives = 40/44 (90.91%), Query Frame = 1
Query:   31 YVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDS 162
            +V+LG+TGSVGSELSRRLV +G +V+LGGR+ EKL++LS EL++
Sbjct:   12 FVVLGATGSVGSELSRRLVASGAQVVLGGRNSEKLDELSAELNA 55          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A6G8PY87_9ACTN (SDR family oxidoreductase n=1 Tax=Rubrobacter marinus TaxID=2653852 RepID=A0A6G8PY87_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 1.680e-8
Identity = 26/44 (59.09%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   31 YVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDS 162
            YV+LG+TG +GSELSRRL K G +++LG RD E+L  L+ ELD+
Sbjct:   10 YVVLGATGGIGSELSRRLAKGGARLVLGARDGERLRSLAAELDA 53          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: C1F7J8_ACIC5 (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Acidobacterium capsulatum TaxID=33075 RepID=C1F7J8_ACIC5)

HSP 1 Score: 53.5 bits (127), Expect = 5.720e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:   22 AQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTEL 156
            A NYVILG+ G +GS L+RRL  AGH++ L GRDQ +L  L+ E+
Sbjct:    2 ANNYVILGAYGGIGSALTRRLADAGHRLFLVGRDQARLQPLAAEV 46          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A4R1LAS3_9BACT (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Acidipila rosea TaxID=768535 RepID=A0A4R1LAS3_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.100e-6
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   22 AQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTEL 156
            A+NYVILG+ G +GSEL+R+L   G ++ML GRD E+L  L+ EL
Sbjct:    2 AENYVILGAYGGIGSELARQLAARGSRLMLVGRDSERLGALAKEL 46          
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Match: A0A5C6AV21_9BACT (3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AV21_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.120e-6
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 1
Query:   31 YVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLSTELDSP 165
            Y+I+G+ G +GS+L RRL  AG++VM+ GR++EKL+ L+ EL  P
Sbjct:    8 YIIVGAAGGIGSDLCRRLTAAGNRVMMVGRNEEKLSALAEELGQP 52          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123826.4872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A517W9H0_9PLAN9.910e-2692.733-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A518A3G0_9PLAN4.260e-1560.003-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A517WRW4_9PLAN6.330e-1465.313-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A517ZQH0_9PLAN1.720e-1170.453-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A518I4X1_9PLAN2.450e-1064.443-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A5C6AZW7_9PLAN8.980e-1065.913-oxoacyl-[acyl-carrier-protein] reductase FabG n=... [more]
A0A6G8PY87_9ACTN1.680e-859.09SDR family oxidoreductase n=1 Tax=Rubrobacter mari... [more]
C1F7J8_ACIC55.720e-755.56Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A4R1LAS3_9BACT1.100e-655.56NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]
A0A5C6AV21_9BACT1.120e-651.113-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123826contigM-pyrifera_M_contig123826:356..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.6404626-CDS-M-pyrifera_M_contig123826:355..5201622815756.6404626-CDS-M-pyrifera_M_contig123826:355..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123826 356..520 +
1692277554.789606-CDS-M-pyrifera_M_contig123826:355..5201692277554.789606-CDS-M-pyrifera_M_contig123826:355..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123826 356..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123826.4872.1prot_M-pyrifera_M_contig123826.4872.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123826 356..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123826.4872.1

>prot_M-pyrifera_M_contig123826.4872.1 ID=prot_M-pyrifera_M_contig123826.4872.1|Name=mRNA_M-pyrifera_M_contig123826.4872.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MSVTVGDAQNYVILGSTGSVGSELSRRLVKAGHKVMLGGRDQEKLNQLST
ELDSP
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mRNA from alignment at M-pyrifera_M_contig123826:356..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123826.4872.1 ID=mRNA_M-pyrifera_M_contig123826.4872.1|Name=mRNA_M-pyrifera_M_contig123826.4872.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig123826:356..520+ (Macrocystis pyrifera P11B4 male)
ATGTCTGTTACTGTTGGCGATGCACAAAACTATGTGATACTGGGATCAAC TGGATCCGTAGGATCTGAACTCAGCCGACGTCTGGTCAAAGCAGGGCATA AAGTGATGCTGGGGGGGCGAGATCAGGAGAAACTGAACCAATTATCCACG GAACTGGATTCTCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123826:356..520+

>mRNA_M-pyrifera_M_contig123826.4872.1 ID=mRNA_M-pyrifera_M_contig123826.4872.1|Name=mRNA_M-pyrifera_M_contig123826.4872.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig123826:356..520+ (Macrocystis pyrifera P11B4 male)
ATGTCTGTTACTGTTGGCGATGCACAAAACTATGTGATACTGGGATCAAC
TGGATCCGTAGGATCTGAACTCAGCCGACGTCTGGTCAAAGCAGGGCATA
AAGTGATGCTGGGGGGGCGAGATCAGGAGAAACTGAACCAATTATCCACG
GAACTGGATTCTCCTATGTCTGTTACTGTTGGCGATGCACAAAACTATGT
GATACTGGGATCAACTGGATCCGTAGGATCTGAACTCAGCCGACGTCTGG
TCAAAGCAGGGCATAAAGTGATGCTGGGGGGGCGAGATCAGGAGAAACTG
AACCAATTATCCACGGAACTGGATTCTCCT
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