mRNA_M-pyrifera_M_contig123825.4871.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123825.4871.1
Unique NamemRNA_M-pyrifera_M_contig123825.4871.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C3AA66_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3AA66_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.610e-16
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 EDGY--GAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGY--AEDPENATEDGFIP 174
            EDGY  GA P  E C PH SDY PQDW I+L+E+LR++QF+N GGY    D +  TEDG+ P
Sbjct:  131 EDGYVPGANPAQEGCAPHSSDYNPQDWTISLSELLRVIQFYNSGGYHACPDADPPTEDGYCP 192          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C4YYY5_9BACT (PASTA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4YYY5_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.220e-16
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    1 EDGYGAG-PGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGY---AEDPENATEDGF 168
            EDGY AG  GD+SC PH SDY PQDW INL+E+LRL+QFFN+GGY    EDPE+  EDG+
Sbjct:  855 EDGYMAGYDGDKSCRPHASDYKPQDWMINLSELLRLIQFFNIGGYHPCPEDPES--EDGY 912          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C3ABG7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3ABG7_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.920e-15
Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 EDGY--GAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGY--AEDPENATEDGFIP 174
            ED Y  G  P  +SCTPH SDY PQ+W I+L+E+LRL+QF+N GGY    D E  TEDG+ P
Sbjct:  130 EDSYVPGQNPAQQSCTPHASDYNPQNWLISLSELLRLIQFYNSGGYHYCPDAEPPTEDGYCP 191          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A1V5YYK7_9BACT (Trypsin n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YYK7_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 3.890e-15
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    4 DGYGAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGFIPI 177
            DGY  G GD +C PHDSDY  QDW+I+L+E+LRLVQ  N GGY  DP   +EDG+ P+
Sbjct:  773 DGYAPGAGDATCPPHDSDYLEQDWQISLSELLRLVQLHNAGGYMPDP--LSEDGYAPL 828          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A661S7X2_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661S7X2_9DELT)

HSP 1 Score: 77.8 bits (190), Expect = 3.900e-15
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 EDGYGAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGF 168
            +DGY  G GD++CTPH SDY PQDW I+L+E LR+ QF+N+ GY  DP+   EDGF
Sbjct:  803 DDGYAIGSGDQTCTPHTSDYTPQDWEISLSEFLRITQFYNLFGYHVDPDG--EDGF 856          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C2WAD5_9BACT (CHRD domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C2WAD5_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 4.920e-15
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 EDGY--GAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGF 168
            EDGY  G  P  + CTPH SDY PQ+W I+L+E+LR++QF+N GGY   P   TEDGF
Sbjct:  213 EDGYVPGQNPAQQDCTPHASDYNPQNWVISLSELLRVIQFYNAGGYYACPGEGTEDGF 270          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C4YZM5_9BACT (PASTA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4YZM5_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.530e-14
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 EDGYGAGP-GDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGFIP 174
            EDGY  G  GD++C PH SDY PQDW INLTE+LRL+QFFN GGY   P    EDG+ P
Sbjct:  720 EDGYIPGKDGDKNCNPHSSDYQPQDWTINLTELLRLIQFFNSGGY--HPCLDGEDGYCP 776          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C3AC84_9BACT (PKD domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3AC84_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.730e-14
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 EDGYGAGPGDESCTPHDSDY-GPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGFIPI 177
            EDGY  GPGD+ C PHDSDY G  +W+I L+E+LRL+QF+N  GY   P    EDGF P+
Sbjct:   63 EDGYAPGPGDQGCDPHDSDYVGGANWKIVLSELLRLIQFYNSCGYEVSP--GAEDGFSPV 120          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A7C3X3X8_9BACT (PASTA domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3X3X8_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.740e-14
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 EDGYGAGPG-DESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGFIP 174
            EDGY  G G D +C PH SDY PQDW+I+L+E+LRL+QFFN GGY   PE  +ED + P
Sbjct:  918 EDGYAPGEGIDYNCLPHTSDYKPQDWKIDLSELLRLIQFFNSGGYYYCPE-ISEDNYCP 975          
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Match: A0A3A4NYQ5_9BACT (Beta_helix domain-containing protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A3A4NYQ5_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.760e-14
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 EDGYGAGPG-DESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPENATEDGF 168
            EDGY  GPG + SC PH+SDY PQDW IN +E+LRL+QF+N GGY  D     EDGF
Sbjct:  741 EDGYIPGPGTNHSCAPHNSDYNPQDWMINQSELLRLIQFYNSGGYYADASG--EDGF 795          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123825.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3AA66_9BACT2.610e-1656.45Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C4YYY5_9BACT3.220e-1666.67PASTA domain-containing protein n=1 Tax=Candidatus... [more]
A0A7C3ABG7_9BACT2.920e-1556.45Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5YYK7_9BACT3.890e-1558.62Trypsin n=1 Tax=Candidatus Hydrogenedentes bacteri... [more]
A0A661S7X2_9DELT3.900e-1558.93Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A7C2WAD5_9BACT4.920e-1556.90CHRD domain-containing protein n=1 Tax=Candidatus ... [more]
A0A7C4YZM5_9BACT2.530e-1462.71PASTA domain-containing protein n=1 Tax=Candidatus... [more]
A0A7C3AC84_9BACT4.730e-1456.67PKD domain-containing protein n=1 Tax=Candidatus H... [more]
A0A7C3X3X8_9BACT4.740e-1459.32PASTA domain-containing protein n=1 Tax=Candidatus... [more]
A0A3A4NYQ5_9BACT4.760e-1461.40Beta_helix domain-containing protein n=1 Tax=Candi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123825contigM-pyrifera_M_contig123825:3..209 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.610698-CDS-M-pyrifera_M_contig123825:2..2091622815756.610698-CDS-M-pyrifera_M_contig123825:2..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123825 3..209 +
1692277554.7796483-CDS-M-pyrifera_M_contig123825:2..2091692277554.7796483-CDS-M-pyrifera_M_contig123825:2..209Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123825 3..209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123825.4871.1prot_M-pyrifera_M_contig123825.4871.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123825 3..209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123825.4871.1

>prot_M-pyrifera_M_contig123825.4871.1 ID=prot_M-pyrifera_M_contig123825.4871.1|Name=mRNA_M-pyrifera_M_contig123825.4871.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
EDGYGAGPGDESCTPHDSDYGPQDWRINLTEILRLVQFFNVGGYAEDPEN
ATEDGFIPIATAKGPREN*
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mRNA from alignment at M-pyrifera_M_contig123825:3..209+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123825.4871.1 ID=mRNA_M-pyrifera_M_contig123825.4871.1|Name=mRNA_M-pyrifera_M_contig123825.4871.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig123825:3..209+ (Macrocystis pyrifera P11B4 male)
GAAGACGGCTATGGGGCGGGGCCCGGCGACGAAAGCTGCACGCCCCACGA CAGCGATTATGGCCCGCAGGATTGGAGAATAAACCTCACGGAAATTCTGC GTCTCGTGCAGTTCTTCAACGTGGGGGGCTATGCGGAAGACCCCGAGAAC GCCACGGAAGATGGCTTCATTCCGATTGCAACCGCGAAGGGCCCGCGGGA AAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123825:3..209+

>mRNA_M-pyrifera_M_contig123825.4871.1 ID=mRNA_M-pyrifera_M_contig123825.4871.1|Name=mRNA_M-pyrifera_M_contig123825.4871.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig123825:3..209+ (Macrocystis pyrifera P11B4 male)
GAAGACGGCTATGGGGCGGGGCCCGGCGACGAAAGCTGCACGCCCCACGA
CAGCGATTATGGCCCGCAGGATTGGAGAATAAACCTCACGGAAATTCTGC
GTCTCGTGCAGTTCTTCAACGTGGGGGGCTATGCGGAAGACCCCGAGAAC
GCCACGGAAGATGGCTTCATTCCGATTGCAACCGCGAAGGGCCCGCGGGA
AAACTGAGAAGACGGCTATGGGGCGGGGCCCGGCGACGAAAGCTGCACGC
CCCACGACAGCGATTATGGCCCGCAGGATTGGAGAATAAACCTCACGGAA
ATTCTGCGTCTCGTGCAGTTCTTCAACGTGGGGGGCTATGCGGAAGACCC
CGAGAACGCCACGGAAGATGGCTTCATTCCGATTGCAACCGCGAAGGGCC
CGCGGGAAAACTGA
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