mRNA_M-pyrifera_M_contig123820.4870.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123820.4870.1
Unique NamemRNA_M-pyrifera_M_contig123820.4870.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: W6V1K7_ECHGR (CAP-Gly domain-containing linker protein n=2 Tax=Echinococcus granulosus TaxID=6210 RepID=W6V1K7_ECHGR)

HSP 1 Score: 78.6 bits (192), Expect = 9.550e-15
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   97 SSAIPPSTPGSVPIGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            SS +P  + GS+ +G RV V     G  VGTV+F G T  AAG WVG+ELDEP GKNDG++ G  YF CKP H +
Sbjct:  109 SSPVPDGSTGSLQVGNRVQVS----GSRVGTVRFIGPTDFAAGEWVGIELDEPLGKNDGTVMGRRYFTCKPNHGL 179
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: A0A068Y7L4_ECHMU (Cytoskeleton associated protein CAP Gly n=2 Tax=Echinococcus TaxID=6209 RepID=A0A068Y7L4_ECHMU)

HSP 1 Score: 77.0 bits (188), Expect = 3.190e-14
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   97 SSAIPPSTPGSVPIGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            SS +P  + GS+ +G RV V     G  VGTV+F G T  A+G WVG+ELDEP GKNDG++ G  YF CKP H +
Sbjct:   88 SSPVPDGSTGSLQVGDRVQVS----GSRVGTVRFIGPTDFASGEWVGIELDEPLGKNDGTVMGRRYFTCKPNHGL 158
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: A0A1Y2HS56_9FUNG (CAP Gly-rich domain-containing protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HS56_9FUNG)

HSP 1 Score: 70.5 bits (171), Expect = 5.810e-14
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  136 IGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKP 309
            IG+RVS   G      GTV+F G T  A GRWVGVELDEP GKNDGS+  V YF CKP
Sbjct:    8 IGQRVSCSGG-----TGTVRFDGTTSFAPGRWVGVELDEPRGKNDGSVQDVRYFECKP 60
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: UPI0004626A46 (CAP-Gly domain-containing linker protein 3-like n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0004626A46)

HSP 1 Score: 73.2 bits (178), Expect = 6.320e-14
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  172 GVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKH 315
            G+ VGT++F G T  A+G+WVGVELDEP GKNDGS+ G+ YF C PKH
Sbjct:   63 GLKVGTLRFCGTTEFASGQWVGVELDEPDGKNDGSVGGIRYFICPPKH 110
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: U9SP70_RHIID (CAP-Gly domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=U9SP70_RHIID)

HSP 1 Score: 70.9 bits (172), Expect = 7.610e-14
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:  181 VGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            +GT++F G T  A G+WVGVELDE SGKN+GS+ G HYF CKP H +
Sbjct:   19 MGTIRFVGPTEFATGKWVGVELDEASGKNNGSVKGKHYFDCKPNHGV 65
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: C3Y9S5_BRAFL (Uncharacterized protein n=2 Tax=Branchiostoma TaxID=7737 RepID=C3Y9S5_BRAFL)

HSP 1 Score: 75.9 bits (185), Expect = 7.750e-14
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  136 IGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            +G+RV +    GGV +GT++F G T  A+G W G+ELDEP GKNDGSI G++YF C PKH I
Sbjct:  294 LGERVII----GGVKMGTLRFCGTTEFASGVWAGIELDEPEGKNDGSIGGIYYFKCAPKHGI 351
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: A0A6P4YSI0_BRABE (CAP-Gly domain-containing linker protein 3-like isoform X1 n=5 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YSI0_BRABE)

HSP 1 Score: 75.9 bits (185), Expect = 8.140e-14
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:  136 IGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            +G+RV +    GGV +GT++F G T  A+G W G+ELDEP GKNDGSI G++YF C PKH I
Sbjct:  296 LGERVII----GGVKMGTLRFCGTTEFASGVWAGIELDEPEGKNDGSIGGIYYFKCAPKHGI 353
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: A0A4P9Z3F7_9FUNG (CAP-Gly domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z3F7_9FUNG)

HSP 1 Score: 69.7 bits (169), Expect = 1.330e-13
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  136 IGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            +G RV V++  G     TVQF G+T  A GRWVGVELDEP GKNDG++ G  YF C+P + +
Sbjct:   11 VGTRVLVQQNPG-----TVQFVGQTSFATGRWVGVELDEPLGKNDGTVQGRRYFECQPNYGV 67
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: UPI0007404EE3 (CAP-Gly domain-containing linker protein 4-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI0007404EE3)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-13
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:  163 GDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            G+ G  VGT++F G T  A+G+W GVELD+P GKNDGS+ GV YF C+PKH I
Sbjct:   82 GESGPAVGTLRFCGGTEFASGQWAGVELDDPEGKNDGSVGGVQYFSCQPKHGI 134
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BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Match: W5NJF3_LEPOC (Si:dkeyp-47f9.4 n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NJF3_LEPOC)

HSP 1 Score: 75.1 bits (183), Expect = 1.510e-13
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  136 IGKRVSVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFHCKPKHVI 321
            +G     RR   G  VGT++F G T  A+G+W GVELD+P GKNDGS+ GV YF C+PKH I
Sbjct:  229 LGSGALQRRSVSGQTVGTLRFCGGTEFASGQWAGVELDDPEGKNDGSVGGVQYFSCQPKHGI 290
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123820.4870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W6V1K7_ECHGR9.550e-1553.33CAP-Gly domain-containing linker protein n=2 Tax=E... [more]
A0A068Y7L4_ECHMU3.190e-1452.00Cytoskeleton associated protein CAP Gly n=2 Tax=Ec... [more]
A0A1Y2HS56_9FUNG5.810e-1462.07CAP Gly-rich domain-containing protein (Fragment) ... [more]
UPI0004626A466.320e-1464.58CAP-Gly domain-containing linker protein 3-like n=... [more]
U9SP70_RHIID7.610e-1461.70CAP-Gly domain-containing protein n=2 Tax=Rhizopha... [more]
C3Y9S5_BRAFL7.750e-1456.45Uncharacterized protein n=2 Tax=Branchiostoma TaxI... [more]
A0A6P4YSI0_BRABE8.140e-1456.45CAP-Gly domain-containing linker protein 3-like is... [more]
A0A4P9Z3F7_9FUNG1.330e-1353.23CAP-Gly domain-containing protein (Fragment) n=1 T... [more]
UPI0007404EE31.400e-1360.38CAP-Gly domain-containing linker protein 4-like n=... [more]
W5NJF3_LEPOC1.510e-1354.84Si:dkeyp-47f9.4 n=1 Tax=Lepisosteus oculatus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123820contigM-pyrifera_M_contig123820:202..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.8
Seed ortholog evalue3.4e-12
Seed eggNOG ortholog6211.A0A068Y7L4
KEGG koko:K10421,ko:K10422
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005794,GO:0005819,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0007017,GO:0007275,GO:0007349,GO:0008017,GO:0008092,GO:0008150,GO:0009653,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0017022,GO:0030424,GO:0030426,GO:0030427,GO:0032036,GO:0032501,GO:0032502,GO:0032991,GO:0033267,GO:0035371,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044295,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045169,GO:0048646,GO:0048856,GO:0051010,GO:0070853,GO:0070854,GO:0097458,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120038,GO:0150034,GO:1990752
EggNOG free text desc.microtubule binding
EggNOG OGs38BCZ@33154,3B9D0@33208,3CVYY@33213,COG5244@1,KOG4568@2759
COG Functional cat.D
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.5809908-CDS-M-pyrifera_M_contig123820:201..5221622815756.5809908-CDS-M-pyrifera_M_contig123820:201..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123820 202..522 +
1692277554.7685716-CDS-M-pyrifera_M_contig123820:201..5221692277554.7685716-CDS-M-pyrifera_M_contig123820:201..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123820 202..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123820.4870.1prot_M-pyrifera_M_contig123820.4870.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123820 202..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123820.4870.1

>prot_M-pyrifera_M_contig123820.4870.1 ID=prot_M-pyrifera_M_contig123820.4870.1|Name=mRNA_M-pyrifera_M_contig123820.4870.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
RIASTTRSSLDGSRRRSKRTKSKSPPSPFPRPSSAIPPSTPGSVPIGKRV
SVRRGDGGVVVGTVQFFGRTHTAAGRWVGVELDEPSGKNDGSICGVHYFH
CKPKHVI
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mRNA from alignment at M-pyrifera_M_contig123820:202..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123820.4870.1 ID=mRNA_M-pyrifera_M_contig123820.4870.1|Name=mRNA_M-pyrifera_M_contig123820.4870.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig123820:202..522+ (Macrocystis pyrifera P11B4 male)
CGAATAGCATCAACAACACGCTCTTCATTGGATGGATCTAGGAGACGTTC
AAAACGTACTAAATCAAAATCCCCCCCTTCACCATTTCCAAGGCCTTCTT
CAGCAATTCCACCGTCAACCCCTGGAAGTGTTCCCATTGGAAAGCGTGTA
TCTGTGCGTCGAGGAGATGGAGGAGTTGTGGTTGGAACTGTTCAATTCTT
TGGAAGAACACATACAGCTGCAGGGAGGTGGGTTGGGGTTGAGTTGGATG
AACCAAGTGGGAAGAACGATGGGTCAATTTGTGGTGTACACTATTTTCAT
TGCAAACCAAAGCATGTTATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123820:202..522+

>mRNA_M-pyrifera_M_contig123820.4870.1 ID=mRNA_M-pyrifera_M_contig123820.4870.1|Name=mRNA_M-pyrifera_M_contig123820.4870.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig123820:202..522+ (Macrocystis pyrifera P11B4 male)
CGAATAGCATCAACAACACGCTCTTCATTGGATGGATCTAGGAGACGTTC
AAAACGTACTAAATCAAAATCCCCCCCTTCACCATTTCCAAGGCCTTCTT
CAGCAATTCCACCGTCAACCCCTGGAAGTGTTCCCATTGGAAAGCGTGTA
TCTGTGCGTCGAGGAGATGGAGGAGTTGTGGTTGGAACTGTTCAATTCTT
TGGAAGAACACATACAGCTGCAGGGAGGTGGGTTGGGGTTGAGTTGGATG
AACCAAGTGGGAAGAACGATGGGTCAATTTGTGGTGTACACTATTTTCAT
TGCAAACCAAAGCATGTTATTCGAATAGCATCAACAACACGCTCTTCATT
GGATGGATCTAGGAGACGTTCAAAACGTACTAAATCAAAATCCCCCCCTT
CACCATTTCCAAGGCCTTCTTCAGCAATTCCACCGTCAACCCCTGGAAGT
GTTCCCATTGGAAAGCGTGTATCTGTGCGTCGAGGAGATGGAGGAGTTGT
GGTTGGAACTGTTCAATTCTTTGGAAGAACACATACAGCTGCAGGGAGGT
GGGTTGGGGTTGAGTTGGATGAACCAAGTGGGAAGAACGATGGGTCAATT
TGTGGTGTACACTATTTTCATTGCAAACCAAAGCATGTTATT
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