mRNA_M-pyrifera_M_contig12382.4869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12382.4869.1
Unique NamemRNA_M-pyrifera_M_contig12382.4869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig12382.4869.1 vs. uniprot
Match: D7G8I9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 8.980e-12
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:   19 AIRARNFLLELLEYPGVEAAISEARGWGEVERLSSALRE 135
            AIRARNF+LELLE+PGVE A+S+ARGWGE+ERLS+ LR+
Sbjct: 1294 AIRARNFVLELLEFPGVELAVSQARGWGELERLSTELRK 1332
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BLAST of mRNA_M-pyrifera_M_contig12382.4869.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 4.120e-5
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   19 AIRARNFLLELLEYPGVEAAISEARGWGEVERLSSALR 132
            A+RAR F+L LLE  GVE AI EA GWG VE  +S+L+
Sbjct: 1762 AVRARKFVLSLLELEGVEEAIVEAGGWGNVEMWASSLK 1799
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12382.4869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8I9_ECTSI8.980e-1276.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FV49_ECTSI4.120e-560.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12382contigM-pyrifera_M_contig12382:8299..8436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.544578-CDS-M-pyrifera_M_contig12382:8298..84361622815756.544578-CDS-M-pyrifera_M_contig12382:8298..8436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12382 8299..8436 -
1692277554.759959-CDS-M-pyrifera_M_contig12382:8298..84361692277554.759959-CDS-M-pyrifera_M_contig12382:8298..8436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12382 8299..8436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12382.4869.1prot_M-pyrifera_M_contig12382.4869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12382 8299..8436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12382.4869.1

>prot_M-pyrifera_M_contig12382.4869.1 ID=prot_M-pyrifera_M_contig12382.4869.1|Name=mRNA_M-pyrifera_M_contig12382.4869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
MVPRNTAIRARNFLLELLEYPGVEAAISEARGWGEVERLSSALRE*
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mRNA from alignment at M-pyrifera_M_contig12382:8299..8436-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12382.4869.1 ID=mRNA_M-pyrifera_M_contig12382.4869.1|Name=mRNA_M-pyrifera_M_contig12382.4869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig12382:8299..8436- (Macrocystis pyrifera P11B4 male)
ATGGTCCCCCGTAACACAGCGATTCGCGCGAGGAACTTCCTGCTGGAGCT
GTTGGAGTACCCGGGGGTGGAAGCCGCCATCTCGGAAGCGCGGGGCTGGG
GAGAAGTGGAGAGGCTGTCGTCGGCGCTTCGGGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12382:8299..8436-

>mRNA_M-pyrifera_M_contig12382.4869.1 ID=mRNA_M-pyrifera_M_contig12382.4869.1|Name=mRNA_M-pyrifera_M_contig12382.4869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig12382:8299..8436- (Macrocystis pyrifera P11B4 male)
ATGGTCCCCCGTAACACAGCGATTCGCGCGAGGAACTTCCTGCTGGAGCT
GTTGGAGTACCCGGGGGTGGAAGCCGCCATCTCGGAAGCGCGGGGCTGGG
GAGAAGTGGAGAGGCTGTCGTCGGCGCTTCGGGAGTGAATGGTCCCCCGT
AACACAGCGATTCGCGCGAGGAACTTCCTGCTGGAGCTGTTGGAGTACCC
GGGGGTGGAAGCCGCCATCTCGGAAGCGCGGGGCTGGGGAGAAGTGGAGA
GGCTGTCGTCGGCGCTTCGGGAGTGA
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