mRNA_M-pyrifera_M_contig123808.4868.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123808.4868.1
Unique NamemRNA_M-pyrifera_M_contig123808.4868.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123808.4868.1 vs. uniprot
Match: A0A5A8E306_CAFRO (Histone acetyltransferase n=8 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E306_CAFRO)

HSP 1 Score: 69.3 bits (168), Expect = 3.060e-11
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:    1 REVYPAAVFDRMREYGMAVWRCRHPGVCHAVHEMLSGVRELLYAGAVRSVSVVLLGASGEAIEQVVFEVDTLGLAADRESP-SKEDLNEMFASTLLKIVASESILG 315
            R VYPAA F+R +++G  V+  RHPGV   + + LS  RE +  G VR V +VLL A G A+EQ  F VD    A D   P + ++   +F   L KI    S+LG
Sbjct:   25 RSVYPAATFERRKQFGAPVYVSRHPGVTALIGDTLSSAREAIAKGGVREVHLVLLDAEGVAVEQYGFAVDA---ALDPAVPVTLDEATMLFGGALTKI----SLLG 123
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BLAST of mRNA_M-pyrifera_M_contig123808.4868.1 vs. uniprot
Match: A0A482RNC8_9ARCH (HORMA domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNC8_9ARCH)

HSP 1 Score: 63.9 bits (154), Expect = 4.840e-10
Identity = 40/115 (34.78%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:   16 AAVFDRMREYGMAVWRCRHPGVCHAVHEMLSGVRELLYAGAVRSVSVVLLGASGEAIEQVVFEVDTLGLAADRESPSK-EDLNEMFASTLLKIVASESILGPTSDKVELFDILIE 357
            A VF+R +EYG+AV+  RHPG+  ++HE+L   R  +  G V  + +V+L A+G AIEQ  F+++   + A  E P+   D+    AS LL++   E+   P   +   F I+++
Sbjct:    5 AEVFERRKEYGIAVFMSRHPGLNASIHEVLFHTRSAICDGLVECIVLVILDATGTAIEQYSFQIN---VRATPEVPATYADVEAALASALLRLGTLEAT-APELPRDATFTIMVQ 115
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123808.4868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E306_CAFRO3.060e-1141.51Histone acetyltransferase n=8 Tax=Cafeteria roenbe... [more]
A0A482RNC8_9ARCH4.840e-1034.78HORMA domain-containing protein n=1 Tax=archaeon T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123808contigM-pyrifera_M_contig123808:6..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.5089128-CDS-M-pyrifera_M_contig123808:5..3741622815756.5089128-CDS-M-pyrifera_M_contig123808:5..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123808 6..374 +
1692277554.7514892-CDS-M-pyrifera_M_contig123808:5..3741692277554.7514892-CDS-M-pyrifera_M_contig123808:5..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123808 6..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123808.4868.1prot_M-pyrifera_M_contig123808.4868.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123808 6..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123808.4868.1

>prot_M-pyrifera_M_contig123808.4868.1 ID=prot_M-pyrifera_M_contig123808.4868.1|Name=mRNA_M-pyrifera_M_contig123808.4868.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
REVYPAAVFDRMREYGMAVWRCRHPGVCHAVHEMLSGVRELLYAGAVRSV
SVVLLGASGEAIEQVVFEVDTLGLAADRESPSKEDLNEMFASTLLKIVAS
ESILGPTSDKVELFDILIEADRD
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mRNA from alignment at M-pyrifera_M_contig123808:6..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123808.4868.1 ID=mRNA_M-pyrifera_M_contig123808.4868.1|Name=mRNA_M-pyrifera_M_contig123808.4868.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig123808:6..374+ (Macrocystis pyrifera P11B4 male)
CGCGAAGTGTACCCTGCAGCGGTGTTTGACCGGATGCGCGAGTATGGCAT
GGCTGTGTGGCGTTGTCGCCATCCAGGGGTGTGCCATGCAGTGCATGAAA
TGCTCTCTGGGGTGCGCGAGCTGCTTTATGCTGGCGCAGTGCGGTCTGTG
TCTGTAGTGTTGCTTGGTGCGAGTGGTGAGGCGATCGAACAAGTTGTGTT
CGAAGTCGACACCCTAGGTCTTGCGGCAGATCGTGAGTCACCGTCCAAAG
AAGACCTGAATGAAATGTTTGCGTCCACCCTCCTCAAGATCGTGGCTTCT
GAGTCCATCTTAGGTCCTACCTCTGACAAAGTCGAACTCTTCGACATCCT
CATTGAGGCAGATCGAGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123808:6..374+

>mRNA_M-pyrifera_M_contig123808.4868.1 ID=mRNA_M-pyrifera_M_contig123808.4868.1|Name=mRNA_M-pyrifera_M_contig123808.4868.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig123808:6..374+ (Macrocystis pyrifera P11B4 male)
CGCGAAGTGTACCCTGCAGCGGTGTTTGACCGGATGCGCGAGTATGGCAT
GGCTGTGTGGCGTTGTCGCCATCCAGGGGTGTGCCATGCAGTGCATGAAA
TGCTCTCTGGGGTGCGCGAGCTGCTTTATGCTGGCGCAGTGCGGTCTGTG
TCTGTAGTGTTGCTTGGTGCGAGTGGTGAGGCGATCGAACAAGTTGTGTT
CGAAGTCGACACCCTAGGTCTTGCGGCAGATCGTGAGTCACCGTCCAAAG
AAGACCTGAATGAAATGTTTGCGTCCACCCTCCTCAAGATCGTGGCTTCT
GAGTCCATCTTAGGTCCTACCTCTGACAAAGTCGAACTCTTCGACATCCT
CATTGAGGCAGATCGAGACCGCGAAGTGTACCCTGCAGCGGTGTTTGACC
GGATGCGCGAGTATGGCATGGCTGTGTGGCGTTGTCGCCATCCAGGGGTG
TGCCATGCAGTGCATGAAATGCTCTCTGGGGTGCGCGAGCTGCTTTATGC
TGGCGCAGTGCGGTCTGTGTCTGTAGTGTTGCTTGGTGCGAGTGGTGAGG
CGATCGAACAAGTTGTGTTCGAAGTCGACACCCTAGGTCTTGCGGCAGAT
CGTGAGTCACCGTCCAAAGAAGACCTGAATGAAATGTTTGCGTCCACCCT
CCTCAAGATCGTGGCTTCTGAGTCCATCTTAGGTCCTACCTCTGACAAAG
TCGAACTCTTCGACATCCTCATTGAGGCAGATCGAGAC
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