mRNA_M-pyrifera_M_contig123795.4865.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123795.4865.1
Unique NamemRNA_M-pyrifera_M_contig123795.4865.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: M5W353_PRUPE (Ldh_1_N domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5W353_PRUPE)

HSP 1 Score: 84.0 bits (206), Expect = 1.520e-18
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:   25 TSNLFYGLIVLYDEFLQYADQDQKFLDPHHTITSGLEDP 141
            +SNLFYGLIVLYDEFL+YADQDQKFLDPHHTITSGLEDP
Sbjct:  205 SSNLFYGLIVLYDEFLKYADQDQKFLDPHHTITSGLEDP 243
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: M5WQE8_PRUPE (Plastocyanin-like domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5WQE8_PRUPE)

HSP 1 Score: 69.7 bits (169), Expect = 9.700e-13
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:   46 LIVLYDEFLQYADQDQKFLDPHHTITSGLEDP 141
            L VLYDEFLQYADQDQKFLDPHHTITSGLEDP
Sbjct:  337 LYVLYDEFLQYADQDQKFLDPHHTITSGLEDP 368
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A5H2XGF1_PRUDU (Haloacid dehalogenase-like hydrolase superfamily protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XGF1_PRUDU)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-8
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:    4 WCGFIVHTSNLFYGLIVLYDEFLQYADQDQKFLDPHHTITSGLEDP 141
            W G  +    + +G I + D  + Y DQDQKFLDPHHT TSGLEDP
Sbjct:   40 WMGMNLQHRQVDHGWISIIDA-VSYTDQDQKFLDPHHTFTSGLEDP 84
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A5H2XS16_PRUDU (Uncharacterized protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XS16_PRUDU)

HSP 1 Score: 53.5 bits (127), Expect = 3.230e-8
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 1 
Query:   70 LQYADQDQKFLDPHHTITSGLEDP 141
            L Y DQDQKFLDPHHTITSGLEDP
Sbjct:   51 LNYTDQDQKFLDPHHTITSGLEDP 74
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: M5W6Q2_PRUPE (DUF1990 domain-containing protein n=1 Tax=Prunus persica TaxID=3760 RepID=M5W6Q2_PRUPE)

HSP 1 Score: 52.0 bits (123), Expect = 4.310e-7
Identity = 21/23 (91.30%), Postives = 23/23 (100.00%), Query Frame = 1 
Query:   73 QYADQDQKFLDPHHTITSGLEDP 141
            +YADQDQKFLDP+HTITSGLEDP
Sbjct:  108 EYADQDQKFLDPYHTITSGLEDP 130
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A4Y1R5E2_PRUDU (Haloacid dehalogenase-like hydrolase superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R5E2_PRUDU)

HSP 1 Score: 50.4 bits (119), Expect = 2.440e-6
Identity = 20/22 (90.91%), Postives = 20/22 (90.91%), Query Frame = 1 
Query:   76 YADQDQKFLDPHHTITSGLEDP 141
            Y DQDQKFLDPHHT TSGLEDP
Sbjct:  131 YTDQDQKFLDPHHTFTSGLEDP 152
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A5H2Y5Z1_PRUDU (Uncharacterized protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y5Z1_PRUDU)

HSP 1 Score: 47.8 bits (112), Expect = 4.700e-6
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 1 
Query:   79 ADQDQKFLDPHHTITSGLEDP 141
             DQDQKFLDPHHT TSGLEDP
Sbjct:   42 TDQDQKFLDPHHTFTSGLEDP 62
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A5E4FLN3_PRUDU (PREDICTED: (+)-neomenthol dehydrogenase n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4FLN3_PRUDU)

HSP 1 Score: 50.1 bits (118), Expect = 5.390e-6
Identity = 20/23 (86.96%), Postives = 21/23 (91.30%), Query Frame = 1 
Query:   73 QYADQDQKFLDPHHTITSGLEDP 141
            +Y DQDQKFLDPHHTI SGLEDP
Sbjct:  167 KYTDQDQKFLDPHHTIISGLEDP 189
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BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Match: A0A4Y1R6H1_PRUDU (Xyloglucan endotransglycosylase 6 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R6H1_PRUDU)

HSP 1 Score: 47.4 bits (111), Expect = 8.130e-5
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 1 
Query:   82 DQDQKFLDPHHTITSGLEDP 141
            DQDQKFLDPHHT TSGLEDP
Sbjct:  268 DQDQKFLDPHHTFTSGLEDP 287
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123795.4865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
M5W353_PRUPE1.520e-1894.87Ldh_1_N domain-containing protein n=1 Tax=Prunus p... [more]
M5WQE8_PRUPE9.700e-1396.88Plastocyanin-like domain-containing protein n=1 Ta... [more]
A0A5H2XGF1_PRUDU1.010e-854.35Haloacid dehalogenase-like hydrolase superfamily p... [more]
A0A5H2XS16_PRUDU3.230e-891.67Uncharacterized protein n=1 Tax=Prunus dulcis TaxI... [more]
M5W6Q2_PRUPE4.310e-791.30DUF1990 domain-containing protein n=1 Tax=Prunus p... [more]
A0A4Y1R5E2_PRUDU2.440e-690.91Haloacid dehalogenase-like hydrolase superfamily p... [more]
A0A5H2Y5Z1_PRUDU4.700e-690.48Uncharacterized protein n=1 Tax=Prunus dulcis TaxI... [more]
A0A5E4FLN3_PRUDU5.390e-686.96PREDICTED: (+)-neomenthol dehydrogenase n=2 Tax=Pr... [more]
A0A4Y1R6H1_PRUDU8.130e-595.00Xyloglucan endotransglycosylase 6 n=1 Tax=Prunus d... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123795contigM-pyrifera_M_contig123795:339..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score84.7
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog3760.EMJ08162
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Belongs to the LDH MDH superfamily
EggNOG OGs37HJA@33090,3G8DS@35493,4JKYF@91835,COG0039@1,KOG1495@2759,KOG4748@1,KOG4748@2759
EC1.1.1.27
COG Functional cat.C
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04147
Exons1
Model size145
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.3728268-CDS-M-pyrifera_M_contig123795:338..4821622815756.3728268-CDS-M-pyrifera_M_contig123795:338..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123795 339..482 +
1692277554.6920106-CDS-M-pyrifera_M_contig123795:338..4821692277554.6920106-CDS-M-pyrifera_M_contig123795:338..482Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123795 339..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123795.4865.1prot_M-pyrifera_M_contig123795.4865.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123795 339..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123795.4865.1

>prot_M-pyrifera_M_contig123795.4865.1 ID=prot_M-pyrifera_M_contig123795.4865.1|Name=mRNA_M-pyrifera_M_contig123795.4865.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
VWCGFIVHTSNLFYGLIVLYDEFLQYADQDQKFLDPHHTITSGLEDP*
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mRNA from alignment at M-pyrifera_M_contig123795:339..482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123795.4865.1 ID=mRNA_M-pyrifera_M_contig123795.4865.1|Name=mRNA_M-pyrifera_M_contig123795.4865.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig123795:339..482+ (Macrocystis pyrifera P11B4 male)
GTATGGTGCGGGTTTATCGTCCATACCAGTAATTTATTTTATGGATTAAT
TGTGCTGTATGATGAGTTTTTACAGTATGCAGATCAGGACCAGAAGTTCC
TTGATCCTCATCATACAATTACATCAGGACTTGAAGATCCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123795:339..482+

>mRNA_M-pyrifera_M_contig123795.4865.1 ID=mRNA_M-pyrifera_M_contig123795.4865.1|Name=mRNA_M-pyrifera_M_contig123795.4865.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig123795:339..482+ (Macrocystis pyrifera P11B4 male)
GTATGGTGCGGGTTTATCGTCCATACCAGTAATTTATTTTATGGATTAAT
TGTGCTGTATGATGAGTTTTTACAGTATGCAGATCAGGACCAGAAGTTCC
TTGATCCTCATCATACAATTACATCAGGACTTGAAGATCCTTGAGTATGG
TGCGGGTTTATCGTCCATACCAGTAATTTATTTTATGGATTAATTGTGCT
GTATGATGAGTTTTTACAGTATGCAGATCAGGACCAGAAGTTCCTTGATC
CTCATCATACAATTACATCAGGACTTGAAGATCCTTGA
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