mRNA_M-pyrifera_M_contig123773.4863.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123773.4863.1
Unique NamemRNA_M-pyrifera_M_contig123773.4863.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A2E3MFB3_9GAMM (Crotonase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E3MFB3_9GAMM)

HSP 1 Score: 185 bits (469), Expect = 1.480e-52
Identity = 88/128 (68.75%), Postives = 106/128 (82.81%), Query Frame = 1
Query:    4 SGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            +GFIAGAD+ QFG I+D+NEA +L+RQGQK+  +L  LS+PTVAMI+GFCLGGGLELSLAC+YRVA+    TR+GLPEV LGIHPGWGG+VRLP LIG   AMDL+LSGRT++A  A   G+VDA VP
Sbjct:   65 TGFIAGADVEQFGKIKDINEAVDLVRQGQKVLDRLAALSMPTVAMIEGFCLGGGLELSLACRYRVAENSRKTRLGLPEVLLGIHPGWGGTVRLPQLIGILPAMDLILSGRTVSANAAAKMGVVDAAVP 192          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A2E2TZA6_9GAMM (Crotonase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2TZA6_9GAMM)

HSP 1 Score: 182 bits (463), Expect = 8.750e-52
Identity = 89/129 (68.99%), Postives = 103/129 (79.84%), Query Frame = 1
Query:    1 QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            Q+GFIAGADI QF  +  V+ A  LI QG K+F +L  L +PT+A IKGFCLGGGLEL+L CKYR+A ED  TRIGLPEVKLGIHPGWGG+VRLP L+GAP A+DL+LSGRTL AKQA   G+VDA VP
Sbjct:   62 QTGFIAGADIEQFKTLTSVDMAKELITQGAKVFDRLAALKLPTIASIKGFCLGGGLELALCCKYRIALEDDRTRIGLPEVKLGIHPGWGGTVRLPRLVGAPNALDLILSGRTLRAKQAAKMGVVDAAVP 190          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A1G0J4T3_9GAMM (3-hydroxyacyl-CoA dehydrogenase n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A1G0J4T3_9GAMM)

HSP 1 Score: 181 bits (459), Expect = 3.540e-51
Identity = 86/129 (66.67%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    1 QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            ++GFIAGADISQF ++E+ +EA  LIRQGQ IF+KL  L  P++A+I+GFCLGGGLEL+LAC YR+A++D  TRIGLPEV LGIHPGWGG+VRLP LIGAP+A+DL+LSG+TL A +A   GI+D  VP
Sbjct:   60 KTGFIAGADISQFEHLENSDEAMQLIRQGQLIFEKLSQLPFPSIALIRGFCLGGGLELALACTYRIANDDIKTRIGLPEVLLGIHPGWGGTVRLPRLIGAPQALDLILSGKTLPAVKAAKLGILDEAVP 188          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A7D5S9M2_9COXI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Coxiellaceae bacterium TaxID=2026727 RepID=A0A7D5S9M2_9COXI)

HSP 1 Score: 180 bits (457), Expect = 6.400e-51
Identity = 84/129 (65.12%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            + GFIAGADI QF   +D  EAFNL+RQ Q ++ KL+ LSIPTVAMI GFCLGGG EL LAC+YRVA++   TRIGLPE+KLGIHPGWGG++RLP LIGAP A++L+L+GR ++AK A   G VD  VP
Sbjct:   65 KQGFIAGADIQQFTQFKDAEEAFNLVRQAQLVYDKLEQLSIPTVAMIDGFCLGGGTELVLACRYRVAEDGXKTRIGLPEIKLGIHPGWGGTIRLPKLIGAPNALELILTGRAVSAKAAAKMGFVDVAVP 193          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A1G0H628_9GAMM (Crotonase n=1 Tax=Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20 TaxID=1798283 RepID=A0A1G0H628_9GAMM)

HSP 1 Score: 177 bits (448), Expect = 1.250e-49
Identity = 81/129 (62.79%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            + GFIAGADISQF   +D+ +A  L+++GQ IF ++  L IPTVAMI+GFCLGGGLE +LAC+YRVA++ A TR+GLPE+K+GIHPGWGGS+RLP LIGAP+A++++LSG T++AK A   G VDA VP
Sbjct:   65 KQGFIAGADISQFSQFKDIAQATELVKRGQHIFDQVAALKIPTVAMIEGFCLGGGLEFALACRYRVAEDGAKTRLGLPEIKVGIHPGWGGSIRLPKLIGAPQALNMILSGHTVSAKAAAKLGFVDAAVP 193          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A5C7SID8_9GAMM (3-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax=Pseudoxanthomonas sp. TaxID=1871049 RepID=A0A5C7SID8_9GAMM)

HSP 1 Score: 168 bits (425), Expect = 2.070e-49
Identity = 81/124 (65.32%), Postives = 95/124 (76.61%), Query Frame = 1
Query:    4 SGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVD 375
            SGFIAGAD+ +F   +      + IR+GQ +FQKL +L  PTVA I GFC+GGG E+SLAC YRVA  D STRIGLPEVKLGI PGWGGS RLP L+GAPKAMD+ML+GRTL+A  AK  G+VD
Sbjct:   68 SGFIAGADLKEFQEFDRKGTVNDAIRRGQAVFQKLAELPCPTVAAIHGFCMGGGTEISLACDYRVASSDPSTRIGLPEVKLGIFPGWGGSARLPRLVGAPKAMDMMLTGRTLSASSAKTMGLVD 191          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A849HYZ0_9GAMM (Crotonase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A849HYZ0_9GAMM)

HSP 1 Score: 176 bits (445), Expect = 4.110e-49
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 1
Query:    4 SGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            +GFIAGADI+QF  + DVNEAF L+R+GQ I+ KLD LSI TVAMI GFC+GGG E++LAC YRVA+E   TRI LPE+ LGIHPGWGGSVRL  LIG  KAMD+MLSGR L+A+ A   G++D  VP
Sbjct:   66 NGFIAGADIAQFSQLNDVNEAFALVRKGQMIYDKLDALSITTVAMIDGFCMGGGTEMALACDYRVAEESQKTRIALPEILLGIHPGWGGSVRLVRLIGPAKAMDIMLSGRGLSARAAAKSGVIDVAVP 193          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: Q83DW6_COXBU (Enoyl-CoA hydratase n=12 Tax=Coxiella burnetii TaxID=777 RepID=Q83DW6_COXBU)

HSP 1 Score: 174 bits (442), Expect = 9.210e-49
Identity = 83/129 (64.34%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            + GFIAGADI QF ++++ NEAF+LIRQ Q +  KL+ L +PTVAMI GFCLGGGLE++LAC+YRVA+++ ST IGLPEVKLGIHPGWGG+VRL  LIGAPKAM++ML G  + A+++   G+VDA VP
Sbjct:   72 KKGFIAGADIKQFTDLKNKNEAFDLIRQAQLVLDKLEALPMPTVAMISGFCLGGGLEVALACRYRVAEDNESTLIGLPEVKLGIHPGWGGTVRLSKLIGAPKAMEIMLPGAAVPARKSAKLGMVDAAVP 200          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: A0A2E2TGI3_9GAMM (Crotonase n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E2TGI3_9GAMM)

HSP 1 Score: 174 bits (441), Expect = 1.200e-48
Identity = 84/128 (65.62%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    4 SGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACVP 387
            SGFI GADI  F  I+D NEAF L+R+GQ IF+KL++L IPT+A+I G CLGGGLEL+LAC YRVA ++  T++GLPEV LGIHPGWGG++RLP  IGA KAMDL+LSGRT+ AK A   G +DA VP
Sbjct:   63 SGFILGADIQAFTEIKDANEAFELVRKGQIIFEKLENLKIPTLALIDGACLGGGLELALACDYRVAHDNRKTKLGLPEVLLGIHPGWGGTIRLPRCIGALKAMDLILSGRTVPAKVAAKIGFIDAAVP 190          
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Match: UPI000B17707B (enoyl-CoA hydratase-related protein n=1 Tax=Piscirickettsia salmonis TaxID=1238 RepID=UPI000B17707B)

HSP 1 Score: 163 bits (413), Expect = 1.700e-48
Identity = 76/127 (59.84%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    4 SGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGFCLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGAPKAMDLMLSGRTLAAKQAKAFGIVDACV 384
            SGFIAGAD+ +F  +E+V +A   +RQGQ IF KL+++ IPTVA+I GFCLGGGLEL+LAC+YR+A +   TR+GLPEV LGI P WGG+VRLP  +G+  A+DLML+GRTL A+ AK  G++D  V
Sbjct:   63 SGFIAGADVHEFSGLENVADALAYVRQGQAIFNKLENIGIPTVALIHGFCLGGGLELALACRYRIASDSVKTRLGLPEVMLGIQPAWGGTVRLPERVGSLNALDLMLTGRTLRAQPAKKQGLIDQVV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123773.4863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E3MFB3_9GAMM1.480e-5268.75Crotonase n=1 Tax=Legionellales bacterium TaxID=20... [more]
A0A2E2TZA6_9GAMM8.750e-5268.99Crotonase n=1 Tax=Legionellales bacterium TaxID=20... [more]
A0A1G0J4T3_9GAMM3.540e-5166.673-hydroxyacyl-CoA dehydrogenase n=2 Tax=unclassifi... [more]
A0A7D5S9M2_9COXI6.400e-5165.12Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A1G0H628_9GAMM1.250e-4962.79Crotonase n=1 Tax=Gammaproteobacteria bacterium RI... [more]
A0A5C7SID8_9GAMM2.070e-4965.323-hydroxyacyl-CoA dehydrogenase (Fragment) n=1 Tax... [more]
A0A849HYZ0_9GAMM4.110e-4966.41Crotonase n=1 Tax=Legionellales bacterium TaxID=20... [more]
Q83DW6_COXBU9.210e-4964.34Enoyl-CoA hydratase n=12 Tax=Coxiella burnetii Tax... [more]
A0A2E2TGI3_9GAMM1.200e-4865.63Crotonase n=1 Tax=Legionellales bacterium TaxID=20... [more]
UPI000B17707B1.700e-4859.84enoyl-CoA hydratase-related protein n=1 Tax=Piscir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123773contigM-pyrifera_M_contig123773:20..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score178.3
Seed ortholog evalue2.2e-42
Seed eggNOG ortholog227377.CBU_0576
Preferred nameyfcX
KEGG rclassRC00029,RC00099,RC00117,RC00241,RC00525,RC00831,RC00834,RC00896,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG koko:K01782
KEGG ReactionR01975,R03026,R03045,R03276,R04137,R04170,R04203,R04204,R04224,R04737,R04738,R04739,R04740,R04741,R04744,R04745,R04746,R04748,R04749,R05066,R05305,R06411,R06412,R06941,R06942,R07935,R07951,R08093,R08094
KEGG Pathwayko00071,ko00280,ko00281,ko00310,ko00362,ko00380,ko00410,ko00640,ko00650,ko00903,ko00930,ko01040,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00071,map00280,map00281,map00310,map00362,map00380,map00410,map00640,map00650,map00903,map00930,map01040,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00032,M00087
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
EggNOG OGs1JCH1@118969,1MU9P@1224,1RMZ8@1236,COG1024@1,COG1024@2,COG1250@1,COG1250@2
EC1.1.1.35,4.2.1.17,5.1.2.3
COG Functional cat.I
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.304803-CDS-M-pyrifera_M_contig123773:19..4061622815756.304803-CDS-M-pyrifera_M_contig123773:19..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123773 20..406 +
1692277554.66721-CDS-M-pyrifera_M_contig123773:19..4061692277554.66721-CDS-M-pyrifera_M_contig123773:19..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123773 20..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123773.4863.1prot_M-pyrifera_M_contig123773.4863.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123773 20..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123773.4863.1

>prot_M-pyrifera_M_contig123773.4863.1 ID=prot_M-pyrifera_M_contig123773.4863.1|Name=mRNA_M-pyrifera_M_contig123773.4863.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
QSGFIAGADISQFGNIEDVNEAFNLIRQGQKIFQKLDDLSIPTVAMIKGF
CLGGGLELSLACKYRVADEDASTRIGLPEVKLGIHPGWGGSVRLPNLIGA
PKAMDLMLSGRTLAAKQAKAFGIVDACVP
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mRNA from alignment at M-pyrifera_M_contig123773:20..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123773.4863.1 ID=mRNA_M-pyrifera_M_contig123773.4863.1|Name=mRNA_M-pyrifera_M_contig123773.4863.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig123773:20..406+ (Macrocystis pyrifera P11B4 male)
CAATCAGGCTTTATTGCCGGTGCAGACATAAGCCAATTTGGCAATATTGA AGATGTTAATGAAGCATTTAACTTAATTCGTCAGGGGCAGAAAATCTTTC AAAAACTCGATGATTTAAGTATTCCAACGGTTGCTATGATTAAAGGGTTT TGTTTAGGGGGTGGTTTAGAATTATCACTCGCATGCAAGTATCGCGTGGC TGATGAGGATGCGAGCACGCGAATAGGGTTGCCTGAAGTGAAGCTTGGGA TCCATCCAGGTTGGGGCGGTTCTGTTCGCTTGCCCAATTTGATTGGTGCA CCCAAGGCGATGGACTTGATGTTAAGTGGCCGTACATTAGCGGCTAAACA AGCGAAAGCCTTTGGTATTGTAGATGCTTGCGTACCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123773:20..406+

>mRNA_M-pyrifera_M_contig123773.4863.1 ID=mRNA_M-pyrifera_M_contig123773.4863.1|Name=mRNA_M-pyrifera_M_contig123773.4863.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig123773:20..406+ (Macrocystis pyrifera P11B4 male)
CAATCAGGCTTTATTGCCGGTGCAGACATAAGCCAATTTGGCAATATTGA
AGATGTTAATGAAGCATTTAACTTAATTCGTCAGGGGCAGAAAATCTTTC
AAAAACTCGATGATTTAAGTATTCCAACGGTTGCTATGATTAAAGGGTTT
TGTTTAGGGGGTGGTTTAGAATTATCACTCGCATGCAAGTATCGCGTGGC
TGATGAGGATGCGAGCACGCGAATAGGGTTGCCTGAAGTGAAGCTTGGGA
TCCATCCAGGTTGGGGCGGTTCTGTTCGCTTGCCCAATTTGATTGGTGCA
CCCAAGGCGATGGACTTGATGTTAAGTGGCCGTACATTAGCGGCTAAACA
AGCGAAAGCCTTTGGTATTGTAGATGCTTGCGTACCACAATCAGGCTTTA
TTGCCGGTGCAGACATAAGCCAATTTGGCAATATTGAAGATGTTAATGAA
GCATTTAACTTAATTCGTCAGGGGCAGAAAATCTTTCAAAAACTCGATGA
TTTAAGTATTCCAACGGTTGCTATGATTAAAGGGTTTTGTTTAGGGGGTG
GTTTAGAATTATCACTCGCATGCAAGTATCGCGTGGCTGATGAGGATGCG
AGCACGCGAATAGGGTTGCCTGAAGTGAAGCTTGGGATCCATCCAGGTTG
GGGCGGTTCTGTTCGCTTGCCCAATTTGATTGGTGCACCCAAGGCGATGG
ACTTGATGTTAAGTGGCCGTACATTAGCGGCTAAACAAGCGAAAGCCTTT
GGTATTGTAGATGCTTGCGTACCA
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