mRNA_M-pyrifera_M_contig123764.4858.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123764.4858.1
Unique NamemRNA_M-pyrifera_M_contig123764.4858.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A0L0DHF4_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DHF4_THETB)

HSP 1 Score: 85.1 bits (209), Expect = 6.050e-17
Identity = 42/109 (38.53%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:   10 LAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRGCVSG 336
            L V+ L+  ++LRV+VG+ L L+ +PV +    +    WRP  L + LA  Y+ + +   P +LGSLEL+GNPT L+RD ++ + +L   P  G   GP  F  G  SG
Sbjct: 3354 LVVSPLEFEVTLRVSVGVALGLEATPVAVGGARLGAHCWRPEVLGEILAARYISDALLMTPALLGSLELLGNPTGLVRDVSSGLADLFLMPYHGWSSGPVGFAAGLGSG 3462
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A3S1AXS0_ELYCH (VPS13_C domain-containing protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1AXS0_ELYCH)

HSP 1 Score: 73.9 bits (180), Expect = 4.580e-13
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:    1 ISSLAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            +  L++  + + LS+  +V +FL+ DH+P+ L  F         + L   L   Y    +FRA  ++GSLE++GNPT L+R     V +LI  P  G   GPS FV G
Sbjct:  265 VKHLSIQPIKMLLSVHASVRLFLASDHTPLNLAQFQRDDVFSTTQRLVHALTMHYASAAIFRAGIVVGSLEILGNPTGLVRSIGTGVSDLISLPYSGLTRGPSAFVYG 372
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A1S3IRU4_LINUN (vacuolar protein sorting-associated protein 13B n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IRU4_LINUN)

HSP 1 Score: 72.4 bits (176), Expect = 1.730e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:   10 LAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            L++  + L+LS+  ++ +FLS D++P+    F +         L + LA  Y    +FRA  ++GSLEL+GNPT L+R     V +L + P  G   GP  FV G
Sbjct: 3669 LSIQPMSLQLSVHASLKLFLSSDNTPLNFGHFEVDNIHTTSSTLIRTLAMHYATGALFRAGWVVGSLELLGNPTGLVRSIGTGVADLFRMPYAGLSRGPGAFVGG 3773
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: K1Q6R7_CRAGI (Vacuolar protein sorting-associated protein 13B n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q6R7_CRAGI)

HSP 1 Score: 71.6 bits (174), Expect = 3.220e-12
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:    1 ISSLAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            I  L++  + L LS+  ++ +F++ D +P+    F  S        L + LA  Y    +FRA  ++GSLE++GNPT LIR     V +L+++P  G   GP  FV G
Sbjct: 3540 IEHLSIKSISLLLSVHASLKLFIASDRTPLAFGKFEKSKVVTTSYHLIRTLAMHYASGALFRAGIVVGSLEILGNPTGLIRSIGTGVADLVKKPYAGLTQGPGAFVTG 3647
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: UPI000719AC75 (vacuolar protein sorting-associated protein 13B-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719AC75)

HSP 1 Score: 71.6 bits (174), Expect = 3.220e-12
Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:    1 ISSLAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRGCVSG 336
            +  L V  L L +S   ++ +FL+ D +P+   AF        P  LA  L + Y      RA  ++GSL+L+G+PT+++R+  + + +L + P EGA HGP +F+ G   G
Sbjct: 3678 LQGLTVGPLSLLVSAHASLKLFLASDSTPLSFGAFERRDLCTTPWCLANALLRHYAAGAALRAGWVVGSLDLLGSPTSMLREVTSGMADLFRMPYEGATHGPGSFIAGMSRG 3789
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: UPI000D7306F1 (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13B-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D7306F1)

HSP 1 Score: 70.9 bits (172), Expect = 6.000e-12
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   28 DLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRGCVSG 336
            ++ LS+  +V +FL+ DH+P+   AF         + L   +A  Y+   +FRA  ++GSL+++G+PT L+R     + + ++ P +G +HGP  FV G   G
Sbjct: 3593 NILLSVHASVKMFLATDHTPLTFAAFERQSLFTSAQQLLYSVAMHYITSAIFRAGMVVGSLDILGSPTGLVRSVRLGMTDFVRLPYQGLIHGPLAFVTGVRGG 3695
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A2T7PGF8_POMCA (TFIIS central domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PGF8_POMCA)

HSP 1 Score: 70.9 bits (172), Expect = 6.030e-12
Identity = 33/103 (32.04%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   28 DLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRGCVSG 336
            ++ LS+  +V +FL+ DH+P+   AF         + L   +A  Y+   +FRA  ++GSL+++G+PT L+R     + + ++ P +G +HGP  FV G   G
Sbjct: 5729 NILLSVHASVKMFLATDHTPLTFAAFERQSLFTSAQQLLYSVAMHYITSAIFRAGMVVGSLDILGSPTGLVRSVRLGMTDFVRLPYQGLIHGPLAFVTGVRGG 5831
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A401NVB5_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401NVB5_SCYTO)

HSP 1 Score: 69.7 bits (169), Expect = 1.510e-11
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   10 LAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            L +  + L +S+  ++ ++++ DH+P+    F        PR L   LA  Y    +FRA  ++GSLE++G+P NL+R     + +  + P EG   GP  FV G
Sbjct: 1835 LTIRSISLLVSVHASIKLYIASDHAPLSFSLFERGPIYTTPRQLIHALAMHYAAGALFRAGWVVGSLEILGSPANLVRSIGNGIADFFRLPYEGLTRGPGAFVSG 1939
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A4W3GSH7_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GSH7_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-11
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   10 LAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            L +  + L +S+  ++ ++++ DH+P+    F        PR L   LA  Y    +FRA  ++GSLE++G+P NL+R     + +  + P EG   GP  FV G
Sbjct: 3548 LTIQPVSLLVSVHASIKLYIASDHAPLSFSLFERGSIYTTPRQLIHALAMHYAAGALFRAGWVVGSLEILGSPANLVRSIGNGIADFFRLPYEGLTRGPGAFVSG 3652
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BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Match: A0A4W3H7W2_CALMI (Uncharacterized protein n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3H7W2_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.530e-11
Identity = 33/105 (31.43%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   10 LAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKHLAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMHGPSTFVRG 324
            L +  + L +S+  ++ ++++ DH+P+    F        PR L   LA  Y    +FRA  ++GSLE++G+P NL+R     + +  + P EG   GP  FV G
Sbjct: 3573 LTIQPVSLLVSVHASIKLYIASDHAPLSFSLFERGSIYTTPRQLIHALAMHYAAGALFRAGWVVGSLEILGSPANLVRSIGNGIADFFRLPYEGLTRGPGAFVSG 3677
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123764.4858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0DHF4_THETB6.050e-1738.53Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A3S1AXS0_ELYCH4.580e-1335.19VPS13_C domain-containing protein (Fragment) n=1 T... [more]
A0A1S3IRU4_LINUN1.730e-1235.24vacuolar protein sorting-associated protein 13B n=... [more]
K1Q6R7_CRAGI3.220e-1234.26Vacuolar protein sorting-associated protein 13B n=... [more]
UPI000719AC753.220e-1233.04vacuolar protein sorting-associated protein 13B-li... [more]
UPI000D7306F16.000e-1232.04LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]
A0A2T7PGF8_POMCA6.030e-1232.04TFIIS central domain-containing protein n=1 Tax=Po... [more]
A0A401NVB5_SCYTO1.510e-1131.43Uncharacterized protein (Fragment) n=1 Tax=Scylior... [more]
A0A4W3GSH7_CALMI1.530e-1131.43Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]
A0A4W3H7W2_CALMI1.530e-1131.43Uncharacterized protein n=1 Tax=Callorhinchus mili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123764contigM-pyrifera_M_contig123764:187..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5e-14
Seed eggNOG ortholog529818.AMSG_07543T0
KEGG koko:K19525
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.0858371-CDS-M-pyrifera_M_contig123764:186..5221622815756.0858371-CDS-M-pyrifera_M_contig123764:186..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123764 187..522 +
1692277554.5902727-CDS-M-pyrifera_M_contig123764:186..5221692277554.5902727-CDS-M-pyrifera_M_contig123764:186..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123764 187..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123764.4858.1prot_M-pyrifera_M_contig123764.4858.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123764 187..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123764.4858.1

>prot_M-pyrifera_M_contig123764.4858.1 ID=prot_M-pyrifera_M_contig123764.4858.1|Name=mRNA_M-pyrifera_M_contig123764.4858.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
ISSLAVARLDLRLSLRVNVGIFLSLDHSPVELDAFSISGEAWRPRPLAKH
LAQVYVYEMVFRAPTILGSLELMGNPTNLIRDYAAAVQELIQRPLEGAMH
GPSTFVRGCVSG
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mRNA from alignment at M-pyrifera_M_contig123764:187..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123764.4858.1 ID=mRNA_M-pyrifera_M_contig123764.4858.1|Name=mRNA_M-pyrifera_M_contig123764.4858.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig123764:187..522+ (Macrocystis pyrifera P11B4 male)
ATCAGCTCCCTGGCGGTGGCGCGGCTGGACCTGCGGCTGTCGCTGCGCGT
AAACGTGGGCATTTTCCTCTCGCTCGACCACTCGCCTGTTGAGCTCGACG
CCTTCTCGATCAGCGGCGAGGCGTGGCGGCCGCGGCCCCTGGCCAAGCAC
CTGGCGCAAGTGTACGTCTACGAGATGGTGTTCCGCGCGCCCACCATCTT
GGGCTCACTCGAGCTGATGGGTAACCCCACGAACCTCATCCGCGACTACG
CCGCCGCTGTGCAGGAGCTCATCCAGCGGCCGCTCGAGGGCGCAATGCAC
GGGCCCTCCACCTTCGTGAGGGGCTGTGTGTCGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123764:187..522+

>mRNA_M-pyrifera_M_contig123764.4858.1 ID=mRNA_M-pyrifera_M_contig123764.4858.1|Name=mRNA_M-pyrifera_M_contig123764.4858.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig123764:187..522+ (Macrocystis pyrifera P11B4 male)
ATCAGCTCCCTGGCGGTGGCGCGGCTGGACCTGCGGCTGTCGCTGCGCGT
AAACGTGGGCATTTTCCTCTCGCTCGACCACTCGCCTGTTGAGCTCGACG
CCTTCTCGATCAGCGGCGAGGCGTGGCGGCCGCGGCCCCTGGCCAAGCAC
CTGGCGCAAGTGTACGTCTACGAGATGGTGTTCCGCGCGCCCACCATCTT
GGGCTCACTCGAGCTGATGGGTAACCCCACGAACCTCATCCGCGACTACG
CCGCCGCTGTGCAGGAGCTCATCCAGCGGCCGCTCGAGGGCGCAATGCAC
GGGCCCTCCACCTTCGTGAGGGGCTGTGTGTCGGGCATCAGCTCCCTGGC
GGTGGCGCGGCTGGACCTGCGGCTGTCGCTGCGCGTAAACGTGGGCATTT
TCCTCTCGCTCGACCACTCGCCTGTTGAGCTCGACGCCTTCTCGATCAGC
GGCGAGGCGTGGCGGCCGCGGCCCCTGGCCAAGCACCTGGCGCAAGTGTA
CGTCTACGAGATGGTGTTCCGCGCGCCCACCATCTTGGGCTCACTCGAGC
TGATGGGTAACCCCACGAACCTCATCCGCGACTACGCCGCCGCTGTGCAG
GAGCTCATCCAGCGGCCGCTCGAGGGCGCAATGCACGGGCCCTCCACCTT
CGTGAGGGGCTGTGTGTCGGGC
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