mRNA_M-pyrifera_M_contig123763.4857.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123763.4857.1
Unique NamemRNA_M-pyrifera_M_contig123763.4857.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123763.4857.1 vs. uniprot
Match: A0A523NXN5_9PROT (Uncharacterized protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NXN5_9PROT)

HSP 1 Score: 177 bits (449), Expect = 2.600e-52
Identity = 92/123 (74.80%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    1 PARFIHLIEWLDPAPTGQPYREANHVGIYRQNVLVGNLDEAYANVLAHGGRPYAEPSWIVLTPDGFQVRVFGFRDPXXXXXXXXXXXXXDNPAPYPGMLHHCNLNVRDLATSYRFYRDVIGLD 369
            PAR +HLI+W  P PTG PY EANHVGIYRQN LV NLD+AYANVLA+GGRPY EPSWI+LTPDGF V VF +RDP XXXXXXXXXXXX     YPGM+HHCNLNVR+L  SY+FYRD +GLD
Sbjct:   96 PARLMHLIQWKSPKPTGTPYLEANHVGIYRQNSLVTNLDDAYANVLANGGRPYGEPSWIILTPDGFGVTVFAYRDPDXXXXXXXXXXXXXGKIAYPGMMHHCNLNVRNLERSYKFYRDTLGLD 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123763.4857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A523NXN5_9PROT2.600e-5274.80Uncharacterized protein n=2 Tax=Proteobacteria bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123763contigM-pyrifera_M_contig123763:50..418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815756.05443-CDS-M-pyrifera_M_contig123763:49..4181622815756.05443-CDS-M-pyrifera_M_contig123763:49..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123763 50..418 -
1692277554.5680606-CDS-M-pyrifera_M_contig123763:49..4181692277554.5680606-CDS-M-pyrifera_M_contig123763:49..418Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123763 50..418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123763.4857.1prot_M-pyrifera_M_contig123763.4857.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123763 50..418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123763.4857.1

>prot_M-pyrifera_M_contig123763.4857.1 ID=prot_M-pyrifera_M_contig123763.4857.1|Name=mRNA_M-pyrifera_M_contig123763.4857.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
PARFIHLIEWLDPAPTGQPYREANHVGIYRQNVLVGNLDEAYANVLAHGG
RPYAEPSWIVLTPDGFQVRVFGFRDPDGSTLEMIGCDDPDNPAPYPGMLH
HCNLNVRDLATSYRFYRDVIGLD
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mRNA from alignment at M-pyrifera_M_contig123763:50..418-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123763.4857.1 ID=mRNA_M-pyrifera_M_contig123763.4857.1|Name=mRNA_M-pyrifera_M_contig123763.4857.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig123763:50..418- (Macrocystis pyrifera P11B4 male)
CCCGCGCGTTTCATCCATTTGATCGAATGGCTCGATCCGGCACCGACGGG
ACAGCCGTACCGCGAGGCGAACCACGTCGGTATCTATCGCCAGAACGTCC
TCGTCGGCAATCTCGACGAGGCTTATGCGAACGTGCTCGCGCACGGTGGC
CGTCCCTACGCGGAGCCAAGCTGGATCGTGCTCACCCCGGACGGTTTCCA
GGTGCGCGTGTTCGGGTTCCGCGATCCGGATGGATCGACGCTCGAAATGA
TCGGGTGTGACGATCCGGACAATCCCGCCCCGTATCCCGGCATGCTGCAT
CACTGCAATCTGAACGTCCGTGATCTCGCGACGTCCTACCGCTTTTACCG
CGACGTGATCGGTCTCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123763:50..418-

>mRNA_M-pyrifera_M_contig123763.4857.1 ID=mRNA_M-pyrifera_M_contig123763.4857.1|Name=mRNA_M-pyrifera_M_contig123763.4857.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig123763:50..418- (Macrocystis pyrifera P11B4 male)
CCCGCGCGTTTCATCCATTTGATCGAATGGCTCGATCCGGCACCGACGGG
ACAGCCGTACCGCGAGGCGAACCACGTCGGTATCTATCGCCAGAACGTCC
TCGTCGGCAATCTCGACGAGGCTTATGCGAACGTGCTCGCGCACGGTGGC
CGTCCCTACGCGGAGCCAAGCTGGATCGTGCTCACCCCGGACGGTTTCCA
GGTGCGCGTGTTCGGGTTCCGCGATCCGGATGGATCGACGCTCGAAATGA
TCGGGTGTGACGATCCGGACAATCCCGCCCCGTATCCCGGCATGCTGCAT
CACTGCAATCTGAACGTCCGTGATCTCGCGACGTCCTACCGCTTTTACCG
CGACGTGATCGGTCTCGACCCCGCGCGTTTCATCCATTTGATCGAATGGC
TCGATCCGGCACCGACGGGACAGCCGTACCGCGAGGCGAACCACGTCGGT
ATCTATCGCCAGAACGTCCTCGTCGGCAATCTCGACGAGGCTTATGCGAA
CGTGCTCGCGCACGGTGGCCGTCCCTACGCGGAGCCAAGCTGGATCGTGC
TCACCCCGGACGGTTTCCAGGTGCGCGTGTTCGGGTTCCGCGATCCGGAT
GGATCGACGCTCGAAATGATCGGGTGTGACGATCCGGACAATCCCGCCCC
GTATCCCGGCATGCTGCATCACTGCAATCTGAACGTCCGTGATCTCGCGA
CGTCCTACCGCTTTTACCGCGACGTGATCGGTCTCGAC
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